Lag0016916 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016916
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 42288546 .. 42289135 (+)
RNA-Seq Expression	Lag0016916
Synteny	Lag0016916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCTCTCTCTCCAGATCCCAAGCCCTAACCCTAACCCTAAATCTCCTTCTTCCTCGTTGCTCCTCTCCTTTATTTCCCCTTCAATCTCTCTTCCTCCGTAATTTCTCCTCCTCTTCCGACAACGATCTCACCGACCACTCTGAATCTTCTTCTCCTTCCTCCGATCCCCTTCTTCGCAACCTTGAGGACGCTATTCAACGAATCCTCGTTCGCCGATCCGCCCCTGATTGGCTCCCCTTCGTTCCGGGCGCTTCTTATTGGGTTCCCCTTCCTTCTTCTCATTTACCTCCCATTGCCAACCTTGTTCACACCTTCGCTAATCCTCTCTCTCGCGAACAATCCTTGTCTACCACTACCGTCCGTGGCTGGCCCTCTTCTCGTTATTTCATTCAAGGTATTGCTCTTCTTTCTTCTCTCTTTCCTTGCATTTTCATTTTCTTATGTATTCTATTTAAAACAAAAATCATTGCTTCCTCGCCCTTCAATCAATCATAGGTGCCCATCTGCCTTCTCTTGAGCCCGAGGTTGAGACCCCGTCGCCCGAATGTGATGCTTCCCAACATTTTGACCACGAGGAAGGATGA

mRNA sequence

ATGTCTCTCTCTCTCTCCAGATCCCAAGCCCTAACCCTAACCCTAAATCTCCTTCTTCCTCGTTGCTCCTCTCCTTTATTTCCCCTTCAATCTCTCTTCCTCCGTAATTTCTCCTCCTCTTCCGACAACGATCTCACCGACCACTCTGAATCTTCTTCTCCTTCCTCCGATCCCCTTCTTCGCAACCTTGAGGACGCTATTCAACGAATCCTCGTTCGCCGATCCGCCCCTGATTGGCTCCCCTTCGTTCCGGGCGCTTCTTATTGGGTTCCCCTTCCTTCTTCTCATTTACCTCCCATTGCCAACCTTGTTCACACCTTCGCTAATCCTCTCTCTCGCGAACAATCCTTGTCTACCACTACCGTCCGTGGCTGGCCCTCTTCTCGTTATTTCATTCAAGGTGCCCATCTGCCTTCTCTTGAGCCCGAGGTTGAGACCCCGTCGCCCGAATGTGATGCTTCCCAACATTTTGACCACGAGGAAGGATGA

Coding sequence (CDS)

ATGTCTCTCTCTCTCTCCAGATCCCAAGCCCTAACCCTAACCCTAAATCTCCTTCTTCCTCGTTGCTCCTCTCCTTTATTTCCCCTTCAATCTCTCTTCCTCCGTAATTTCTCCTCCTCTTCCGACAACGATCTCACCGACCACTCTGAATCTTCTTCTCCTTCCTCCGATCCCCTTCTTCGCAACCTTGAGGACGCTATTCAACGAATCCTCGTTCGCCGATCCGCCCCTGATTGGCTCCCCTTCGTTCCGGGCGCTTCTTATTGGGTTCCCCTTCCTTCTTCTCATTTACCTCCCATTGCCAACCTTGTTCACACCTTCGCTAATCCTCTCTCTCGCGAACAATCCTTGTCTACCACTACCGTCCGTGGCTGGCCCTCTTCTCGTTATTTCATTCAAGGTGCCCATCTGCCTTCTCTTGAGCCCGAGGTTGAGACCCCGTCGCCCGAATGTGATGCTTCCCAACATTTTGACCACGAGGAAGGATGA

Protein sequence

MSLSLSRSQALTLTLNLLLPRCSSPLFPLQSLFLRNFSSSSDNDLTDHSESSSPSSDPLLRNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSSHLPPIANLVHTFANPLSREQSLSTTTVRGWPSSRYFIQGAHLPSLEPEVETPSPECDASQHFDHEEG

Homology

[Close]

BLAST of Lag0016916 vs. NCBI nr
Match: XP_022980733.1 (uncharacterized protein LOC111480015 isoform X1 [Cucurbita maxima])

HSP 1 Score: 245.7 bits (626), Expect = 2.7e-61
Identity = 133/161 (82.61%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 1   MSLSLSRSQALTLTLNLLLPRCSSPLFPLQSLFLRNFSSSSDNDLTDHSESSSPSSDPLL 60
           +SLS SRS  LTLTLNLL PR     FPLQSL  R FSSS+DNDLTD SE  SPSSDPLL
Sbjct: 3   LSLSKSRSLTLTLTLNLLRPRPRPRPFPLQSLDRRTFSSSTDNDLTDLSE--SPSSDPLL 62

Query: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS-SHLPPIANLVHTFANPLSREQSLST 120
           RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIANL+H FANPLS EQSLST
Sbjct: 63  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLST 122

Query: 121 TTVRGWPSSRYFIQGAHLPSLEPEVETPSPECDASQHFDHE 161
           TTVRGWPSS +FIQG+HLPSLEPEVET S EC+ASQH DHE
Sbjct: 123 TTVRGWPSSHFFIQGSHLPSLEPEVETNSAECEASQHSDHE 161

[Close]

BLAST of Lag0016916 vs. NCBI nr
Match: XP_022980734.1 (uncharacterized protein LOC111480015 isoform X2 [Cucurbita maxima])

HSP 1 Score: 245.7 bits (626), Expect = 2.7e-61
Identity = 133/161 (82.61%), Postives = 139/161 (86.34%), Query Frame = 0


Query: 1   MSLSLSRSQALTLTLNLLLPRCSSPLFPLQSLFLRNFSSSSDNDLTDHSESSSPSSDPLL 60
           +SLS SRS  LTLTLNLL PR     FPLQSL  R FSSS+DNDLTD SE  SPSSDPLL
Sbjct: 3   LSLSKSRSLTLTLTLNLLRPRPRPRPFPLQSLDRRTFSSSTDNDLTDLSE--SPSSDPLL 62

Query: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS-SHLPPIANLVHTFANPLSREQSLST 120
           RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIANL+H FANPLS EQSLST
Sbjct: 63  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLST 122

Query: 121 TTVRGWPSSRYFIQGAHLPSLEPEVETPSPECDASQHFDHE 161
           TTVRGWPSS +FIQG+HLPSLEPEVET S EC+ASQH DHE
Sbjct: 123 TTVRGWPSSHFFIQGSHLPSLEPEVETNSAECEASQHSDHE 161

[Close]

BLAST of Lag0016916 vs. NCBI nr
Match: KAG7018211.1 (hypothetical protein SDJN02_20079, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.6 bits (623), Expect = 5.9e-61
Identity = 135/162 (83.33%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MSLSLSRSQALTLTLNLLLPRCSSPLFPLQSLFLRNFSSSSDNDLTDHSESSSPSSDPLL 60
           +SLS SRS  LTLTLNLL PR S    PLQSL  R FSSS DNDLTD SE  SPSSDPLL
Sbjct: 3   LSLSKSRSLTLTLTLNLLRPRLS----PLQSLDRRTFSSSPDNDLTDLSE--SPSSDPLL 62

Query: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS-SHLPPIANLVHTFANPLSREQSLST 120
           RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIANL+H FANPLS EQSLST
Sbjct: 63  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLST 122

Query: 121 TTVRGWPSSRYFIQGAHLPSLEPEVETPSPECDASQHFDHEE 162
           TTVRGWPSS +FIQGAHLPSLEPEVET S EC+ASQH DHEE
Sbjct: 123 TTVRGWPSSHFFIQGAHLPSLEPEVETNSAECEASQHSDHEE 158

[Close]

BLAST of Lag0016916 vs. NCBI nr
Match: XP_022956127.1 (uncharacterized protein LOC111457911 isoform X2 [Cucurbita moschata])

HSP 1 Score: 244.6 bits (623), Expect = 5.9e-61
Identity = 135/162 (83.33%), Postives = 139/162 (85.80%), Query Frame = 0


Query: 1   MSLSLSRSQALTLTLNLLLPRCSSPLFPLQSLFLRNFSSSSDNDLTDHSESSSPSSDPLL 60
           +SLS SRS  LTLTLNLL PR S    PLQSL  R FSSS DNDLTD SE  SPSSDPLL
Sbjct: 3   LSLSKSRSLTLTLTLNLLRPRLS----PLQSLGRRTFSSSPDNDLTDLSE--SPSSDPLL 62

Query: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS-SHLPPIANLVHTFANPLSREQSLST 120
           RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIANL+H FANPLS EQSLST
Sbjct: 63  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLST 122

Query: 121 TTVRGWPSSRYFIQGAHLPSLEPEVETPSPECDASQHFDHEE 162
           TTVRGWPSS +FIQGAHLPSLEPEVET S EC+ASQH DHEE
Sbjct: 123 TTVRGWPSSHFFIQGAHLPSLEPEVETNSAECEASQHSDHEE 158

[Close]

BLAST of Lag0016916 vs. NCBI nr
Match: XP_022956126.1 (uncharacterized protein LOC111457911 isoform X1 [Cucurbita moschata])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 134/161 (83.23%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 1   MSLSLSRSQALTLTLNLLLPRCSSPLFPLQSLFLRNFSSSSDNDLTDHSESSSPSSDPLL 60
           +SLS SRS  LTLTLNLL PR S    PLQSL  R FSSS DNDLTD SE  SPSSDPLL
Sbjct: 3   LSLSKSRSLTLTLTLNLLRPRLS----PLQSLGRRTFSSSPDNDLTDLSE--SPSSDPLL 62

Query: 61  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS-SHLPPIANLVHTFANPLSREQSLST 120
           RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPS SHLPPIANL+H FANPLS EQSLST
Sbjct: 63  RNLEDAIQRILVRRSAPDWLPFVPGASYWVPLPSTSHLPPIANLLHNFANPLSPEQSLST 122

Query: 121 TTVRGWPSSRYFIQGAHLPSLEPEVETPSPECDASQHFDHE 161
           TTVRGWPSS +FIQGAHLPSLEPEVET S EC+ASQH DHE
Sbjct: 123 TTVRGWPSSHFFIQGAHLPSLEPEVETNSAECEASQHSDHE 157

The following BLAST results are available for this feature:

BLAST of Lag0016916 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022980733.1	2.7e-61	82.61	uncharacterized protein LOC111480015 isoform X1 [Cucurbita maxima]	[more]
XP_022980734.1	2.7e-61	82.61	uncharacterized protein LOC111480015 isoform X2 [Cucurbita maxima]	[more]
KAG7018211.1	5.9e-61	83.33	hypothetical protein SDJN02_20079, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022956127.1	5.9e-61	83.33	uncharacterized protein LOC111457911 isoform X2 [Cucurbita moschata]	[more]
XP_022956126.1	1.7e-60	83.23	uncharacterized protein LOC111457911 isoform X1 [Cucurbita moschata]	[more]

BLAST of Lag0016916 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..162
None	No IPR available	PANTHER	PTHR33972:SF16	REPETITIVE MATRIX PROTEIN 2, PUTATIVE ISOFORM 1-RELATED	coord: 17..150
None	No IPR available	PANTHER	PTHR33972	EXPRESSED PROTEIN	coord: 17..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016916.1	Lag0016916.1	mRNA