Lag0016900 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016900
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiondormancy-associated protein homolog 4-like
Locationchr12: 42164120 .. 42164782 (+)
RNA-Seq ExpressionLag0016900
SyntenyLag0016900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTTCTCCATAAGCTCTGGGACGAAACCCTCGCCGGTCCGCCGCCCGATTCCGGCCTCAGTCGCCTCCGTAAGTACAATTCCTTCTCCGCCTCCAGATCTCCGCCGATGTTATCCAACGACCTCGTCTCCAGTCTTCCTCGCAGCATCCAAATCCCTAGCCCTACGCTCTCTCAGTCCCAGACCTCCTTCCCTGAGTCGCCGATCTCCTCATCCACGCCGCGGACTCCACCGCCCACACGTAAGTCGTCTAATTAATCTTTCTCTTCGAATCCGATCGAATCTGTTGATTTTGATCGAATCGTTATTGGCGTTGATGCAGCGCCAGAGACGCCGCGAGGGGACGATTTGAAGAGACTGACGACGCGAAGATCCATCGATTATCCTCGCCGCCGCCCTATGGAAGGACCTGAACGAACTACCCCTTCTGTTTATGATTGGTCAGTTTTTTCCAATTTTTTGTAAACATAAATAAGAATATAAGTTTATCATTATTGATGATATAGGTGTTAGAGAAACAGAAACAAGAAACGAGAACGTTATCAAACCGTCTTTATAAACTTTATGTTTAATAAATTTGATAATTTAAGATCGAACTTATTTTGTTGACCTTTTTTTTCTTTGTTATATAGGATTGTTATAACAGCTTTAGATCGTTGA

mRNA sequence

ATGAGTTTTCTCCATAAGCTCTGGGACGAAACCCTCGCCGGTCCGCCGCCCGATTCCGGCCTCAGTCGCCTCCGTAAGTACAATTCCTTCTCCGCCTCCAGATCTCCGCCGATGTTATCCAACGACCTCGTCTCCAGTCTTCCTCGCAGCATCCAAATCCCTAGCCCTACGCTCTCTCAGTCCCAGACCTCCTTCCCTGAGTCGCCGATCTCCTCATCCACGCCGCGGACTCCACCGCCCACACCGCCAGAGACGCCGCGAGGGGACGATTTGAAGAGACTGACGACGCGAAGATCCATCGATTATCCTCGCCGCCGCCCTATGGAAGGACCTGAACGAACTACCCCTTCTGTTTATGATTGGATTGTTATAACAGCTTTAGATCGTTGA

Coding sequence (CDS)

ATGAGTTTTCTCCATAAGCTCTGGGACGAAACCCTCGCCGGTCCGCCGCCCGATTCCGGCCTCAGTCGCCTCCGTAAGTACAATTCCTTCTCCGCCTCCAGATCTCCGCCGATGTTATCCAACGACCTCGTCTCCAGTCTTCCTCGCAGCATCCAAATCCCTAGCCCTACGCTCTCTCAGTCCCAGACCTCCTTCCCTGAGTCGCCGATCTCCTCATCCACGCCGCGGACTCCACCGCCCACACCGCCAGAGACGCCGCGAGGGGACGATTTGAAGAGACTGACGACGCGAAGATCCATCGATTATCCTCGCCGCCGCCCTATGGAAGGACCTGAACGAACTACCCCTTCTGTTTATGATTGGATTGTTATAACAGCTTTAGATCGTTGA

Protein sequence

MSFLHKLWDETLAGPPPDSGLSRLRKYNSFSASRSPPMLSNDLVSSLPRSIQIPSPTLSQSQTSFPESPISSSTPRTPPPTPPETPRGDDLKRLTTRRSIDYPRRRPMEGPERTTPSVYDWIVITALDR
Homology
BLAST of Lag0016900 vs. NCBI nr
Match: XP_038878401.1 (dormancy-associated protein homolog 4-like [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 115/130 (88.46%), Postives = 123/130 (94.62%), Query Frame = 0

Query: 1   MSFLHKLWDETLAGPPPDSGLSRLRKYNSFSASRSPPMLSNDLVSSLPRSIQIPSPTLSQ 60
           MSFL KLWDETLAGP PDSGLSRLRKYNSFSASRSPPMLSND+VS++P SIQIPSPTLSQ
Sbjct: 1   MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDVVSNIPPSIQIPSPTLSQ 60

Query: 61  SQTSFPESPI-SSSTPRTPPPTPPETPRGDDLKRLTTRRSIDYPRRRPMEGPERTTPSVY 120
           +QTSFPESPI SSSTPRTPP TPPETPRGDD+KRL  RRSIDYPRRRP+EGPE+T+PSVY
Sbjct: 61  NQTSFPESPIASSSTPRTPPSTPPETPRGDDMKRLARRRSIDYPRRRPLEGPEQTSPSVY 120

Query: 121 DWIVITALDR 130
           DWIVITALDR
Sbjct: 121 DWIVITALDR 130

BLAST of Lag0016900 vs. NCBI nr
Match: XP_022955440.1 (dormancy-associated protein homolog 4-like [Cucurbita moschata] >KAG7018232.1 Dormancy-associated protein-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.7e-50
Identity = 107/129 (82.95%), Postives = 117/129 (90.70%), Query Frame = 0

Query: 1   MSFLHKLWDETLAGPPPDSGLSRLRKYNSFSASRSPPMLSNDLVSSLPRSIQIPSPTLSQ 60
           MSFL KLWD+TLAGP PDSGLSRLRKYNSFSASRSPPMLSND VS+LP  I+IPSPTLSQ
Sbjct: 1   MSFLQKLWDDTLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDAVSNLPPRIEIPSPTLSQ 60

Query: 61  SQTSFPESPISSSTPRTPPPTPPETPRGDDLKRLTTRRSIDYPRRRPMEGPERTTPSVYD 120
           +  SFPESPI+ STPRTPP TPPETPRGD +KRLT RR+IDYP RRP+EGPE+T+PSVYD
Sbjct: 61  A--SFPESPIAPSTPRTPPSTPPETPRGDHVKRLTRRRTIDYPPRRPLEGPEQTSPSVYD 120

Query: 121 WIVITALDR 130
           WIVITALDR
Sbjct: 121 WIVITALDR 127

BLAST of Lag0016900 vs. NCBI nr
Match: XP_023527038.1 (dormancy-associated protein homolog 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 6.4e-50
Identity = 108/130 (83.08%), Postives = 118/130 (90.77%), Query Frame = 0

Query: 1   MSFLHKLWDETLAGPPPDSGLSRLRKYNSFSASRSPPMLSNDLVSSLPRSIQIPSPTLSQ 60
           MSFL KLWD+TLAGP PDSGLSRLRKYNSFSASRSPPMLSND VS+LP  I+IPSPTLSQ
Sbjct: 1   MSFLQKLWDDTLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDAVSNLPPRIEIPSPTLSQ 60

Query: 61  SQTSFPESPISSSTPRTPPPTPPETPRGDDLKRLTTRRSIDY-PRRRPMEGPERTTPSVY 120
           +  SFPESPI+ STPRTPP TPPETPRGD +KRLT RR+IDY PRRRP+EGPE+T+PSVY
Sbjct: 61  A--SFPESPIAPSTPRTPPSTPPETPRGDHVKRLTRRRTIDYPPRRRPLEGPEQTSPSVY 120

Query: 121 DWIVITALDR 130
           DWIVITALDR
Sbjct: 121 DWIVITALDR 128

BLAST of Lag0016900 vs. NCBI nr
Match: XP_022980753.1 (dormancy-associated protein homolog 4-like [Cucurbita maxima])

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-49
Identity = 106/130 (81.54%), Postives = 118/130 (90.77%), Query Frame = 0

Query: 1   MSFLHKLWDETLAGPPPDSGLSRLRKYNSFSASRSPPMLSNDLVSSLPRSIQIPSPTLSQ 60
           MSFL KLWD+TLAGP PDSGLSRLRKYNSFSASRSPPMLSND VS+LP  I+IPSPTLSQ
Sbjct: 1   MSFLQKLWDDTLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDAVSNLPPRIEIPSPTLSQ 60

Query: 61  SQTSFPESPISSSTPRTPPPTPPETPRGDDLKRLTTRRSIDY-PRRRPMEGPERTTPSVY 120
           +  SFPESP++ STPRTPP TPPETPRGD +KRLT RR+IDY PRRRP+EGP++T+PSVY
Sbjct: 61  A--SFPESPVAPSTPRTPPSTPPETPRGDHVKRLTRRRTIDYPPRRRPLEGPQQTSPSVY 120

Query: 121 DWIVITALDR 130
           DWIVITALDR
Sbjct: 121 DWIVITALDR 128

BLAST of Lag0016900 vs. NCBI nr
Match: XP_008460332.1 (PREDICTED: dormancy-associated protein homolog 4 [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 9.6e-46
Identity = 105/138 (76.09%), Postives = 117/138 (84.78%), Query Frame = 0

Query: 1   MSFLHKLWDETLAGPPPDSGLSRLRKYNSFSASRSPPMLSNDLVS------SLPRSIQIP 60
           MSFL KLWDETLAGP PDSGLSRLRKYNSFSASRSPPMLSND++S      ++P +IQIP
Sbjct: 1   MSFLQKLWDETLAGPAPDSGLSRLRKYNSFSASRSPPMLSNDVLSNNNSNNNIPPTIQIP 60

Query: 61  SPTLSQSQTSFPESPI-SSSTPRTPPPTPPETPRG--DDLKRLTTRRSIDYPRRRPMEGP 120
           SPTLSQS TSFPESP+ + STPRTPP TPPET R   D +KRL  RRS+DYP RRP+EGP
Sbjct: 61  SPTLSQSPTSFPESPMPAPSTPRTPPSTPPETLRSGEDHVKRLGRRRSVDYPGRRPLEGP 120

Query: 121 ERTTPSVYDWIVITALDR 130
           E+T+PSVYDWIVITALDR
Sbjct: 121 EQTSPSVYDWIVITALDR 138

BLAST of Lag0016900 vs. ExPASy Swiss-Prot
Match: F4HV65 (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-10
Identity = 55/134 (41.04%), Postives = 70/134 (52.24%), Query Frame = 0

Query: 1   MSFLHKLWDETLAGPPPDSGLSRLRKYNSFSASR-SPPMLSNDLVSSLPRSIQIPSPTLS 60
           M FLHKLWDET+AGP PD+GL +LRK++S S  R SPP LS+D V+   RSI +     +
Sbjct: 1   MGFLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLSSDQVT---RSIMVTKGNNN 60

Query: 61  ----QSQTSFPESPISSSTPRTPPPTPPETPRGDDLKRLTTRRSIDYPRRRPMEGPERTT 120
               +     P+SP  SS+    P TP     G     L    +   P     +    TT
Sbjct: 61  VRGLRKLKMDPDSPTCSSSNPGTPLTP-----GTPCYALGPFTAGKIPSSGEDDAASLTT 120

Query: 121 PSVYDWIVITALDR 130
              Y+WIVI ALDR
Sbjct: 121 ---YEWIVINALDR 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038878401.11.7e-5588.46dormancy-associated protein homolog 4-like [Benincasa hispida][more]
XP_022955440.11.7e-5082.95dormancy-associated protein homolog 4-like [Cucurbita moschata] >KAG7018232.1 Do... [more]
XP_023527038.16.4e-5083.08dormancy-associated protein homolog 4-like [Cucurbita pepo subsp. pepo][more]
XP_022980753.11.9e-4981.54dormancy-associated protein homolog 4-like [Cucurbita maxima][more]
XP_008460332.19.6e-4676.09PREDICTED: dormancy-associated protein homolog 4 [Cucumis melo][more]
Match NameE-valueIdentityDescription
F4HV651.0e-1041.04Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g540... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008406Dormancy/auxin associated proteinPFAMPF05564Auxin_repressedcoord: 7..122
e-value: 8.7E-8
score: 32.9
IPR008406Dormancy/auxin associated proteinPANTHERPTHR33565DORMANCY-ASSOCIATED PROTEIN 1coord: 1..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..114
NoneNo IPR availablePANTHERPTHR33565:SF24DORMANCY-ASSOCIATED PROTEIN HOMOLOG 4coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016900.1Lag0016900.1mRNA