Lag0016884 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016884
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 42078465 .. 42079076 (+)
RNA-Seq ExpressionLag0016884
SyntenyLag0016884
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGCAGGCACTAATTCCAGATCTCCTCCTCTTGCCCTAAAATCTCTTCCATCTCTTCAAACTAAATCTCTGAGCAAAAATTTTATGCTCAAACCTGCAAAAATTTCAGTCAACAGAACTCTCACCGTCCAAATCACATCTTCTATAAAGAACAATCTGGTTAGTCTGTGTGTGTGTGTGTGTGTAGATTTCTTAAATCAGATCATTGTTCTTACAGTCTGGTTGATTTTGGTAGGTTTTCGAGGATCGTACCAATGGTGTGATTTGCTACAGAGATGAGGATGGAGAGATTATATGCGAAGGATATGACGACGAAGAGCCTCGTATCGAGCAAGAGATCGAGAAATTACCTTGTGAAAAATCTTACGGAAGGTAGAAACGTGATCTTGGATTAATTCTCGACTGGATCGAGATGTATCGTGATGGCTTTTCTTTTGTTCTGATTCTTGTTCTTTCTATCTGCGAAGTTTCAGATCTGATGGCGAATTGAAGATCGATCGTCTTCTCCTGCAGCAGTGTTGGGAGAAGCGCTTAGAAACCGTTAATGGCGGTGGTGGAAGTGGAAGAGAAGACCTTCGAATTGGAGCGAATGGCTTCAGTCTGTAG

mRNA sequence

ATGGCAATGGCAGGCACTAATTCCAGATCTCCTCCTCTTGCCCTAAAATCTCTTCCATCTCTTCAAACTAAATCTCTGAGCAAAAATTTTATGCTCAAACCTGCAAAAATTTCAGTCAACAGAACTCTCACCGTCCAAATCACATCTTCTATAAAGAACAATCTGGTTTTCGAGGATCGTACCAATGGTGTGATTTGCTACAGAGATGAGGATGGAGAGATTATATGCGAAGGATATGACGACGAAGAGCCTCGTATCGAGCAAGAGATCGAGAAATTACCTTGTGAAAAATCTTACGGAAGATCTGATGGCGAATTGAAGATCGATCGTCTTCTCCTGCAGCAGTGTTGGGAGAAGCGCTTAGAAACCGTTAATGGCGGTGGTGGAAGTGGAAGAGAAGACCTTCGAATTGGAGCGAATGGCTTCAGTCTGTAG

Coding sequence (CDS)

ATGGCAATGGCAGGCACTAATTCCAGATCTCCTCCTCTTGCCCTAAAATCTCTTCCATCTCTTCAAACTAAATCTCTGAGCAAAAATTTTATGCTCAAACCTGCAAAAATTTCAGTCAACAGAACTCTCACCGTCCAAATCACATCTTCTATAAAGAACAATCTGGTTTTCGAGGATCGTACCAATGGTGTGATTTGCTACAGAGATGAGGATGGAGAGATTATATGCGAAGGATATGACGACGAAGAGCCTCGTATCGAGCAAGAGATCGAGAAATTACCTTGTGAAAAATCTTACGGAAGATCTGATGGCGAATTGAAGATCGATCGTCTTCTCCTGCAGCAGTGTTGGGAGAAGCGCTTAGAAACCGTTAATGGCGGTGGTGGAAGTGGAAGAGAAGACCTTCGAATTGGAGCGAATGGCTTCAGTCTGTAG

Protein sequence

MAMAGTNSRSPPLALKSLPSLQTKSLSKNFMLKPAKISVNRTLTVQITSSIKNNLVFEDRTNGVICYRDEDGEIICEGYDDEEPRIEQEIEKLPCEKSYGRSDGELKIDRLLLQQCWEKRLETVNGGGGSGREDLRIGANGFSL
Homology
BLAST of Lag0016884 vs. NCBI nr
Match: XP_022980749.1 (uncharacterized protein LOC111480023 [Cucurbita maxima])

HSP 1 Score: 232.3 bits (591), Expect = 2.7e-57
Identity = 118/144 (81.94%), Postives = 127/144 (88.19%), Query Frame = 0

Query: 1   MAMAGTNSRSPPLALKSLPSLQTKSLSKNFMLKPAKISVNRTLTVQITSSIKNNLVFEDR 60
           MAM GTN RSPP AL S  SLQTK LS+ FMLKPAK S+NRTLT+QIT S+KNN+VFEDR
Sbjct: 3   MAMTGTNCRSPPFALNSATSLQTKPLSEVFMLKPAKFSLNRTLTLQITCSLKNNVVFEDR 62

Query: 61  TNGVICYRDEDGEIICEGYDDEEPRIEQEIEKLPCEKSYGRSDGELKIDRLLLQQCWEKR 120
           +NGVICYRD+DGEIICEGYDDEEPRIEQEIEKLPCEKS  RSDGELKIDRLLLQQ WEK 
Sbjct: 63  SNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSRRRSDGELKIDRLLLQQNWEKS 122

Query: 121 LETVNGGGGSGREDLRIGANGFSL 145
           LET+NGG GSGR +LRI ANGFSL
Sbjct: 123 LETINGGAGSGRGELRIRANGFSL 146

BLAST of Lag0016884 vs. NCBI nr
Match: XP_022956325.1 (uncharacterized protein LOC111458058 [Cucurbita moschata] >KAG6581790.1 hypothetical protein SDJN03_21792, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.8 bits (582), Expect = 3.0e-56
Identity = 116/144 (80.56%), Postives = 127/144 (88.19%), Query Frame = 0

Query: 1   MAMAGTNSRSPPLALKSLPSLQTKSLSKNFMLKPAKISVNRTLTVQITSSIKNNLVFEDR 60
           MAM GTN RSPP AL S+ SLQTK LS+ FMLKPAK S+NRTLT+QIT S+KNN+VFEDR
Sbjct: 3   MAMTGTNCRSPPFALNSVTSLQTKPLSEVFMLKPAKFSLNRTLTLQITCSLKNNVVFEDR 62

Query: 61  TNGVICYRDEDGEIICEGYDDEEPRIEQEIEKLPCEKSYGRSDGELKIDRLLLQQCWEKR 120
           +NGVICYRD+DGEIICEGYDDEEPRIE+EIEKLPCEKS  RSDGELKIDRLLLQQ WEK 
Sbjct: 63  SNGVICYRDDDGEIICEGYDDEEPRIEEEIEKLPCEKSRRRSDGELKIDRLLLQQNWEKS 122

Query: 121 LETVNGGGGSGREDLRIGANGFSL 145
           LET+NGG GSGR +LRI ANG SL
Sbjct: 123 LETINGGAGSGRGELRIRANGCSL 146

BLAST of Lag0016884 vs. NCBI nr
Match: KAG7018241.1 (hypothetical protein SDJN02_20109 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.3 bits (578), Expect = 8.7e-56
Identity = 115/144 (79.86%), Postives = 127/144 (88.19%), Query Frame = 0

Query: 1   MAMAGTNSRSPPLALKSLPSLQTKSLSKNFMLKPAKISVNRTLTVQITSSIKNNLVFEDR 60
           MAM GTN RSPP AL S+ SLQTK LS+ FMLKPAK S+NRTLT+QIT S+KNN+VFEDR
Sbjct: 3   MAMTGTNCRSPPFALNSVTSLQTKPLSEVFMLKPAKFSLNRTLTLQITCSLKNNVVFEDR 62

Query: 61  TNGVICYRDEDGEIICEGYDDEEPRIEQEIEKLPCEKSYGRSDGELKIDRLLLQQCWEKR 120
           +NGVICYRD+DGEIICEGYDDEEPRIE+EIEKLPCEKS  RS+GELKIDRLLLQQ WEK 
Sbjct: 63  SNGVICYRDDDGEIICEGYDDEEPRIEEEIEKLPCEKSRRRSEGELKIDRLLLQQNWEKS 122

Query: 121 LETVNGGGGSGREDLRIGANGFSL 145
           LET+NGG GSGR +LRI ANG SL
Sbjct: 123 LETINGGAGSGRGELRIRANGCSL 146

BLAST of Lag0016884 vs. NCBI nr
Match: XP_023526222.1 (uncharacterized protein LOC111789773 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 116/146 (79.45%), Postives = 126/146 (86.30%), Query Frame = 0

Query: 1   MAMAGTNSRSPPLALKSLPSLQTKSLSKNFMLKPAKISVNRTLTVQITSSIKNNLVFEDR 60
           MAM GTN RSPP AL S+ SLQTK LS+ FMLKPAK S+NRT T+QIT S+KNN+VFEDR
Sbjct: 3   MAMIGTNCRSPPFALNSVTSLQTKPLSEVFMLKPAKFSLNRTFTLQITCSLKNNVVFEDR 62

Query: 61  TNGVICYRDEDGEIICEGYDDEEPRIEQEIEKLPCEKSYGRSDGELKIDRLLLQQCWEKR 120
           +NGVICYRD+DGEIICEGYDDEEPRIEQEIEKLPCEKS  RSDGELKIDRLLLQQ WEK 
Sbjct: 63  SNGVICYRDDDGEIICEGYDDEEPRIEQEIEKLPCEKSRRRSDGELKIDRLLLQQNWEKS 122

Query: 121 LETVNG--GGGSGREDLRIGANGFSL 145
           LET+NG  G GSGR +LRI ANG SL
Sbjct: 123 LETINGGAGSGSGRGELRIRANGCSL 148

BLAST of Lag0016884 vs. NCBI nr
Match: XP_038900432.1 (uncharacterized protein LOC120087657 [Benincasa hispida])

HSP 1 Score: 214.9 bits (546), Expect = 4.5e-52
Identity = 114/144 (79.17%), Postives = 125/144 (86.81%), Query Frame = 0

Query: 3   MAGTNSRSPPLALKSLPSLQTKSLSKNFML-KPAKISVNRTLTVQITSSIKNNLVFEDRT 62
           MA TN RSP L  KS+ SLQTK LSK FML KPAK+SVNRTLT+QITSS+KNNLVFEDR+
Sbjct: 1   MAATNCRSPLLPRKSITSLQTKPLSKTFMLFKPAKVSVNRTLTLQITSSVKNNLVFEDRS 60

Query: 63  NGVICYRDEDGEIICEGYDDEEPRIEQEIEKLPCEKS-YGRSDGELKIDRLLLQQCWEKR 122
           NGVICYRDEDGEIICEGYDDE+PRIEQEIEKLPCEKS   RSD E ++DRLLLQQ WEKR
Sbjct: 61  NGVICYRDEDGEIICEGYDDEKPRIEQEIEKLPCEKSRRRRSDRESEMDRLLLQQNWEKR 120

Query: 123 LETVNGGGGSGREDLRIGANGFSL 145
           LE +NGG GSGR +LRI ANG+SL
Sbjct: 121 LEAINGGAGSGRGELRIRANGYSL 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022980749.12.7e-5781.94uncharacterized protein LOC111480023 [Cucurbita maxima][more]
XP_022956325.13.0e-5680.56uncharacterized protein LOC111458058 [Cucurbita moschata] >KAG6581790.1 hypothet... [more]
KAG7018241.18.7e-5679.86hypothetical protein SDJN02_20109 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023526222.11.6e-5479.45uncharacterized protein LOC111789773 [Cucurbita pepo subsp. pepo][more]
XP_038900432.14.5e-5279.17uncharacterized protein LOC120087657 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34206OS06G0193300 PROTEINcoord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016884.1Lag0016884.1mRNA