Lag0016870 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016870
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein FAM32A
Location	chr12: 41989869 .. 41991863 (+)
RNA-Seq Expression	Lag0016870
Synteny	Lag0016870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCGTATGACAATGTTGTTGGTGGGAAGTTGAAGCTTAAAGGTAAAGCTCTTGATGTGAAAGTTGGTGGGGTGAAGAAGAAAAAGAAAGTTAAAAAGCAGCTCGATCAAATTTCTCGAGACATGGAAAACGAGCATCCAGCAGGTTTGTTGTTCAATTATTACTTGAATCATTTGGCTTGGACATGAGTGAATGCATATTTATGAATCATCCACATCCTTCTCAGGGCAAAGAATGTGAAATTAGAACTACTAGAGAGCATAACTAAGCCAATATCTTGTCGTATATTTCTTCCATCATACAGACAAACTTTACATACGATATACATACAAAGTATTTGAATTCGGATCTGTAGTCTTTCGATGGTCTAGAATGCCGTTACTTGTTAGGGATCAAACATTAGCAAAAGAATTAACCATTATTTCAGTCCTCATTGTGGGTGCACCGTGGTTTAGATCCCTGTCCTATTGGTTGAATTGATACAGGTAGACTGCCTTGTCTTTCATCCTTGATTTGTTTCGAAAAACTGTATTTTTAATTGTTAGTTGATTTATTACTTTTGCTTTTGTCCATTGATGCTGAAATGTGAATGTGTGGAGGTTAGAATCAGTAGATTCCGAGCTTCATGATGATAAGTGCATGTGTCTAAATTTTTCTCTTGGATGGTTTCTTTTTTGTTGGCCTCTTCATTCTGAAGGACAATTACTAGTTCTCTTAATACAAATTATTGAAGCAACTTCTGTTCAGGACAGTGAAAAATAAGAAAGTCAAACCAACAAGATAGAAAACTGAGTGAGGCAAGGCACCAATCATTATCAGGCCCACTTCCCAGGAAGTTGCCAAACAAACTGAAATGGCTGTTAGTAACTTTAGTTAGCTGGTTAGGTTGTTTACTAGTTAAGGTTTTGGTTAGCAAATACTAGTGTTCTCTTGTAAAAAGAGCAGGTTAGCATTAACTACATTTCTCAACTTTTGGTTTACACCTTCAATTGGCAATGGTAAAAACAGAAGAATATCACAACCACAACAGTTGGTAGTAGGAGTAACTAACGCTCGGAGCAGTTTTTGAAATGCATGATAACTGCTTTATATTGGTGTAAATGTAAACACCCATTTAGTGACTATAGTCTATTTTCTTTACTCTCCAATTGGAACTCTTTCTTGTAATTTTTAGGAGTTTTATCTCCCATTATTTCATTTATCAATAATATTTGTTTCTCTTCTCAAAAGAAAAAAAAGAAATGCATGATAACGGTTCGAAAGCTTAAACGAACTTTGACCATGGATGTTATTTTTACACCCAAGATTTGTTTTATCGTATTATAGTCCTTTGTCATTTTTCCTTTTCCTATGAATCATGCCTAGACTAAAGTGTTAGAATTTACTTTGATTGAAGAACTATCTTACTGTTAGTGGAGATGAATGACCTGCTTAAGAAAAATGCACCCCTCAAATTTTAAGGGGCATTTGCCAATCTGTGCATTTGATCAACTAGTTAAAATGTAAATATCCTCAACCAAGAAGCAGAGGTTCAAATTCTCACCCCTACATGTTGAACTCAAAAAAGAAAAAGAAAAGTCTCAAGTGGATCCTCATTGTCCTTGATGTGTGTTTTCTTGCCTGCAACTTTTCATTATTTTTCTCAAATTATTTGTTGAGAACTTGAGATGATGATGTTCGTGAATCTACAAGCTCTTTTGATGATAAATGCAGGTGGAAGTGGTGCGAGTAGTGAAATCCCAAGTGATGTGAATGAGGAAGAGCAAGAAATAGCTGACACCAACAAGTCAACTGAAGATGGGAAGGCTCCTCATTATGATGATCATCTAACACCAGCAGAAAAGCGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGATTGGCCAAGAAAGCTAATAAATCTCATCGTGATCGCATCCAAGATTTTAACCAATATCTGGCCAACATGAGTGAGCATTATGACATTCCCAAGGTTGGTCCTGGCTGA

mRNA sequence

ATGTCTGCGTATGACAATGTTGTTGGTGGGAAGTTGAAGCTTAAAGGTAAAGCTCTTGATGTGAAAGTTGGTGGGGTGAAGAAGAAAAAGAAAGTTAAAAAGCAGCTCGATCAAATTTCTCGAGACATGGAAAACGAGCATCCAGCAGGTGGAAGTGGTGCGAGTAGTGAAATCCCAAGTGATGTGAATGAGGAAGAGCAAGAAATAGCTGACACCAACAAGTCAACTGAAGATGGGAAGGCTCCTCATTATGATGATCATCTAACACCAGCAGAAAAGCGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGATTGGCCAAGAAAGCTAATAAATCTCATCGTGATCGCATCCAAGATTTTAACCAATATCTGGCCAACATGAGTGAGCATTATGACATTCCCAAGGTTGGTCCTGGCTGA

Coding sequence (CDS)

ATGTCTGCGTATGACAATGTTGTTGGTGGGAAGTTGAAGCTTAAAGGTAAAGCTCTTGATGTGAAAGTTGGTGGGGTGAAGAAGAAAAAGAAAGTTAAAAAGCAGCTCGATCAAATTTCTCGAGACATGGAAAACGAGCATCCAGCAGGTGGAAGTGGTGCGAGTAGTGAAATCCCAAGTGATGTGAATGAGGAAGAGCAAGAAATAGCTGACACCAACAAGTCAACTGAAGATGGGAAGGCTCCTCATTATGATGATCATCTAACACCAGCAGAAAAGCGTTATATTGAACAGAAGGAGAGAATTGATGTTCATAGATTGGCCAAGAAAGCTAATAAATCTCATCGTGATCGCATCCAAGATTTTAACCAATATCTGGCCAACATGAGTGAGCATTATGACATTCCCAAGGTTGGTCCTGGCTGA

Protein sequence

MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPSDVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQDFNQYLANMSEHYDIPKVGPG

Homology

[Close]

BLAST of Lag0016870 vs. NCBI nr
Match: XP_022152607.1 (protein FAM32A [Momordica charantia])

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-64
Identity = 130/141 (92.20%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKK  DQIS+DMENEHP GGSGAS+E+PS
Sbjct: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKHHDQISQDMENEHPTGGSGASNEMPS 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
           DVNEEE+EI D NKSTEDGKAPHYDDHLTPAE+RYIEQKE IDVHRLAKKANKSHRDRIQ
Sbjct: 61  DVNEEEEEIDDANKSTEDGKAPHYDDHLTPAERRYIEQKESIDVHRLAKKANKSHRDRIQ 120

Query: 121 DFNQYLANMSEHYDIPKVGPG 142
           DFNQYLANMSEHYDIPKVGPG
Sbjct: 121 DFNQYLANMSEHYDIPKVGPG 141

[Close]

BLAST of Lag0016870 vs. NCBI nr
Match: XP_022956102.1 (protein FAM32A [Cucurbita moschata] >XP_022956103.1 protein FAM32A [Cucurbita moschata] >KAG7018204.1 Protein FAM32A-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.9 bits (616), Expect = 3.3e-60
Identity = 125/141 (88.65%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           MS+YDNVVGGKLKLKGKALDVKVGGVKKKKK+KK  DQ SR++ENEHPAGGS AS EIP 
Sbjct: 1   MSSYDNVVGGKLKLKGKALDVKVGGVKKKKKLKKHQDQASRELENEHPAGGSAASGEIPD 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
           D NEEE EI + NKSTEDGK PHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ
Sbjct: 61  DANEEE-EIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120

Query: 121 DFNQYLANMSEHYDIPKVGPG 142
           DFNQYLANMSEHYDIPKVGPG
Sbjct: 121 DFNQYLANMSEHYDIPKVGPG 140

[Close]

BLAST of Lag0016870 vs. NCBI nr
Match: XP_023527034.1 (protein FAM32A [Cucurbita pepo subsp. pepo] >XP_023527035.1 protein FAM32A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 7.5e-60
Identity = 124/141 (87.94%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           MS+YDNVVGGKLKLKGKALDVKVGGVKKKKK+KK  DQ SR++ENEHPAGGS AS E+P 
Sbjct: 1   MSSYDNVVGGKLKLKGKALDVKVGGVKKKKKLKKHQDQASRELENEHPAGGSAASGEMPD 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
           D NEEE EI + NKSTEDGK PHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ
Sbjct: 61  DANEEE-EIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120

Query: 121 DFNQYLANMSEHYDIPKVGPG 142
           DFNQYLANMSEHYDIPKVGPG
Sbjct: 121 DFNQYLANMSEHYDIPKVGPG 140

[Close]

BLAST of Lag0016870 vs. NCBI nr
Match: XP_022980751.1 (protein FAM32A-like [Cucurbita maxima] >XP_022980752.1 protein FAM32A-like [Cucurbita maxima])

HSP 1 Score: 239.6 bits (610), Expect = 1.7e-59
Identity = 123/141 (87.23%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           MS+YDNVVGGKLKLKGKALDVKVGGVKKKKK+KK  DQ SR++ENEHPAGGS AS E+P 
Sbjct: 1   MSSYDNVVGGKLKLKGKALDVKVGGVKKKKKLKKHQDQASRELENEHPAGGSAASGEMPD 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
           D NEE+ EI + NKSTEDGK PHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ
Sbjct: 61  DANEED-EIDEANKSTEDGKVPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120

Query: 121 DFNQYLANMSEHYDIPKVGPG 142
           DFNQYLANMSEHYDIPKVGPG
Sbjct: 121 DFNQYLANMSEHYDIPKVGPG 140

[Close]

BLAST of Lag0016870 vs. NCBI nr
Match: XP_004144416.1 (protein FAM32A [Cucumis sativus] >XP_004144417.1 protein FAM32A [Cucumis sativus] >KGN58576.2 hypothetical protein Csa_001967 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 4.8e-59
Identity = 123/141 (87.23%), Postives = 130/141 (92.20%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           MS+YDNVVGGKLKLKGKALDVKVGGVKKKKK+KK  DQISR++ENEHPAGGS AS E PS
Sbjct: 1   MSSYDNVVGGKLKLKGKALDVKVGGVKKKKKLKKNQDQISRELENEHPAGGSAASGEEPS 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
           D NEE  EI + NKSTE+GK PHYDDHLTPAE+RYIEQKERIDVHRLAKKANKSHRDRIQ
Sbjct: 61  DANEE--EIDEANKSTEEGKVPHYDDHLTPAERRYIEQKERIDVHRLAKKANKSHRDRIQ 120

Query: 121 DFNQYLANMSEHYDIPKVGPG 142
           DFNQYLANMSEHYDIPKVGPG
Sbjct: 121 DFNQYLANMSEHYDIPKVGPG 139

[Close]

BLAST of Lag0016870 vs. ExPASy Swiss-Prot
Match: B0JZ89 (Protein FAM32A OS=Xenopus tropicalis OX=8364 GN=fam32a PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.7e-11
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           M+ Y++   G LKLKG   D+ +G  KKKKK  K  DQI                     
Sbjct: 1   MTEYESAQKGALKLKGCG-DMSLG--KKKKKKNKANDQIM-------------------- 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
                 QEI  + K+ E+ K P  D   TPA+  + + +E+  + R+ KKA+K+H+ R++
Sbjct: 61  ------QEIITSKKNEEEKKKPSLDKR-TPAQLAFEKMQEKRQMERILKKASKTHKQRVE 108

Query: 121 DFNQYLANMSEHYDIPKV 139
           DFN++L  ++EHYDIPKV
Sbjct: 121 DFNRHLDTLTEHYDIPKV 108

[Close]

BLAST of Lag0016870 vs. ExPASy Swiss-Prot
Match: Q6GQN4 (Protein FAM32A-like OS=Danio rerio OX=7955 GN=fam32al PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-10
Identity = 48/138 (34.78%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           MS Y +V  G LKLKG +L       KKKKK  K++ ++                     
Sbjct: 1   MSEYKSVQKGSLKLKGVSLP-----SKKKKKKNKEMKRL--------------------- 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
               EEQ +   N   E+G    Y D  TPA+  + + +E+  + R+ KKA+K+H+ R++
Sbjct: 61  ----EEQVLTSEN---EEGTKKAYVDKRTPAQMAFDKIQEKRQMERILKKASKTHKRRVE 105

Query: 121 DFNQYLANMSEHYDIPKV 139
           DFN++L  ++EHYDIPKV
Sbjct: 121 DFNRHLDTLTEHYDIPKV 105

[Close]

BLAST of Lag0016870 vs. ExPASy Swiss-Prot
Match: Q9CR80 (Protein FAM32A OS=Mus musculus OX=10090 GN=Fam32a PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-09
Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           M AY+ V  G LKLKG    V   GV K+KK KK  D+                      
Sbjct: 1   MEAYEQVQKGPLKLKG----VAELGVTKRKKKKKDKDK---------------------- 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
               +  E   T+K +E+ K    D   TPA+  + + +E+  + R+ KKA+K+H+ R++
Sbjct: 61  ---AKMLEAMGTSKKSEEEKRRCLDKR-TPAQAAFEKMQEKRQMERILKKASKTHKQRVE 108

Query: 121 DFNQYLANMSEHYDIPKV 139
           DFN++L  ++EHYDIPKV
Sbjct: 121 DFNRHLDTLTEHYDIPKV 108

[Close]

BLAST of Lag0016870 vs. ExPASy Swiss-Prot
Match: A6QR31 (Protein FAM32A OS=Bos taurus OX=9913 GN=FAM32A PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-09
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           M AY+ V  G LKLKG    V   GV K+KK KK  D+                      
Sbjct: 1   MEAYEQVQKGPLKLKG----VAELGVTKRKKKKKDKDK---------------------- 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
               +  E   T+K  E+ K    D   TPA+  + + +E+  + R+ KKA+K+H+ R++
Sbjct: 61  ---AKLLEAMGTSKKNEEEKRRGLDKR-TPAQAAFEKMQEKRQMERILKKASKTHKQRVE 108

Query: 121 DFNQYLANMSEHYDIPKV 139
           DFN++L  ++EHYDIPKV
Sbjct: 121 DFNRHLDTLTEHYDIPKV 108

[Close]

BLAST of Lag0016870 vs. ExPASy Swiss-Prot
Match: Q9Y421 (Protein FAM32A OS=Homo sapiens OX=9606 GN=FAM32A PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-09
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 0


Query: 1   MSAYDNVVGGKLKLKGKALDVKVGGVKKKKKVKKQLDQISRDMENEHPAGGSGASSEIPS 60
           M AY+ V  G LKLKG    V   GV K+KK KK  D+                      
Sbjct: 1   MEAYEQVQKGPLKLKG----VAELGVTKRKKKKKDKDK---------------------- 60

Query: 61  DVNEEEQEIADTNKSTEDGKAPHYDDHLTPAEKRYIEQKERIDVHRLAKKANKSHRDRIQ 120
               +  E   T+K  E+ K    D   TPA+  + + +E+  + R+ KKA+K+H+ R++
Sbjct: 61  ---AKLLEAMGTSKKNEEEKRRGLDKR-TPAQAAFEKMQEKRQMERILKKASKTHKQRVE 108

Query: 121 DFNQYLANMSEHYDIPKV 139
           DFN++L  ++EHYDIPKV
Sbjct: 121 DFNRHLDTLTEHYDIPKV 108

The following BLAST results are available for this feature:

BLAST of Lag0016870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152607.1	5.0e-64	92.20	protein FAM32A [Momordica charantia]	[more]
XP_022956102.1	3.3e-60	88.65	protein FAM32A [Cucurbita moschata] >XP_022956103.1 protein FAM32A [Cucurbita mo...	[more]
XP_023527034.1	7.5e-60	87.94	protein FAM32A [Cucurbita pepo subsp. pepo] >XP_023527035.1 protein FAM32A [Cucu...	[more]
XP_022980751.1	1.7e-59	87.23	protein FAM32A-like [Cucurbita maxima] >XP_022980752.1 protein FAM32A-like [Cucu...	[more]
XP_004144416.1	4.8e-59	87.23	protein FAM32A [Cucumis sativus] >XP_004144417.1 protein FAM32A [Cucumis sativus...	[more]

BLAST of Lag0016870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B0JZ89	8.7e-11	36.23	Protein FAM32A OS=Xenopus tropicalis OX=8364 GN=fam32a PE=3 SV=1	[more]
Q6GQN4	4.3e-10	34.78	Protein FAM32A-like OS=Danio rerio OX=7955 GN=fam32al PE=3 SV=1	[more]
Q9CR80	4.8e-09	34.78	Protein FAM32A OS=Mus musculus OX=10090 GN=Fam32a PE=2 SV=1	[more]
A6QR31	6.2e-09	34.78	Protein FAM32A OS=Bos taurus OX=9913 GN=FAM32A PE=3 SV=1	[more]
Q9Y421	6.2e-09	34.78	Protein FAM32A OS=Homo sapiens OX=9606 GN=FAM32A PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013865	Protein FAM32A	PFAM	PF08555	DUF1754	coord: 3..102 e-value: 1.0E-14 score: 55.1
IPR013865	Protein FAM32A	PANTHER	PTHR13282	UNCHARACTERIZED	coord: 1..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..90
None	No IPR available	PANTHER	PTHR13282:SF8	PROTEIN FAM32A-LIKE	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016870.1	Lag0016870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus