Lag0016774 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016774
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Dynein beta chain, ciliary protein
Location	chr12: 41110911 .. 41113728 (+)
RNA-Seq Expression	Lag0016774
Synteny	Lag0016774

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACAGGCATTTCGTCGGGCGGCTGGAAGAATCAAGCCGGCTTCGAGCATCGATTCCACTGCCTCTTCGTTGAAAATGGAGAGCGTCGTCGATCGGAAGCCTCCGCCGCGTGTGGTCGAGAAGGCTCGGGAGAGCGGCGCTCTTGATTCTGGTAATTGTAATTTGTTAATCGTTTGCGGCGTTTCTTTGATTTCTCTGATTTGTTTTCGAGTCCTCTTTCTGGCACTTTGAGAATCGAGGCTGAAGGTTCTCGAAGAAGGATTCTGTTTCTCTGTTGAATTAAATGCAGTTTCGTAGAATTCCTGTGAGTTGTAAATCAGCGGATTCTCTCAATCGCTTTGGTTGTTTTTCATTTCATGCTGTTATTGACTGTCTTCGTCAAATAATGTAGCTGCATTTCTCCATTAGGATTTGGATTTAAGCTCATTTACTACTCATTGATCTGATCTTCACTGAAGTAGCTGTTCTCGTTATTGTTTATCGGCTTCTTTTCTCTGTTTTTCCTCTTTCGTTTTTGTTTGTTGGCTTCTGTCTCTCTGAACAGAAATATTTTCTGCTTACTGTTCGTTATTGTCTCTCTTTCCTCTGTGTTTGATTTTGTAGAACTATGGACGAGGTTACAGTTTGATGTGACATTTGCTTCTAATTACAGTTTTATGTGATATTTTTGGTCCTGAACTTTGAGTTCCCTTGCTTCTGAGATTTCGACTTTCTTTCTCTTATTATACTATTCCGCTTGGTTGTATTTATTGAGACAAAAGTTGAGAAGTTCTTTGTTGTCTGCTTCTATTGCGTACTTTTTGATTAGCTTCCGTTGATTTAGGCTTCCAATGTCTAAGCATGTAAAGAAAGCATAGAGGCCAAGGAAAATGTTCTAGATGCTAGGGATTGATGGATGATTTTCATTTTTTTTTCCTCCGAAGCATAATAGCATTCCAGGTGGAGTTTCTTTTTGTTTGATTCTCTTTCTCCGTTGGACCAAATGCAGTTCCATAGAATCCCTATGAGTTCTATATATAAGCAGATTTTGATGACGAGCTTGATTTTTTTGGGGGCGGTTGGTCTGGAAGGACAATAAACATCGAATCACTGGAGAAATTGCCTATAAAATTAGAAACGAATCTGAACAATAACTATCGATAATGCATGTAAATAGTAAAGCATTGTCCAACAATCAGATGGAAATTTAAAGTCACTCCATAGTCAGATGGTTTTTTGCTGACGGGAATTGATTCATCGGATGTTATATAATTTTTTTTAATAGAAACAAATCGGATGTTATATAATTGAATGCTAACAATTTCCAATTGTTTCTTCAGGTGGTGTCTCAGGAAGTAATTCGGGAAATGTGCTTGAAGAAAGAGATCCGCAGTTTGATGCCATGCTTAGCCAAATGGTGGGTCGAATTAAATCAAAGCCTGGAGGAAAACTTGAGATGGGAGAGGTAAGTTTCCATAAGAAGAAACCAAATTACTCTTAGAATAGAGAGACATTGCATATAATTTTAGACTTCTTCAAACTGTAGAGCATGATCCGATGCTCTCCCTTTATTAACTTTTCCATTAATAATCCTTGATGTCTGACCAGTCATACGAGTCAACTGGTGTGATCCTACTGAAAAATTCATATGTAAATTGTAAGTTAATTAGTCCAAATTGTTCTATCATTTGATAACTAGTCAATCTTTGAGAAATGAGCAGACACTAATTTAAATTCGTGATTTTGAAAGCATATAAGCTAAAAGCCTGTCTCTTTAATTGTTAGGAGAAAAAAATCCAAGCTGCACTAAAATGAAAAAGAAAATAAATAAATAAATTTGCCTCCTCACAGAAAGTAAAGAGTTTTTTTTTTTCCCTTCTTTTTCTTGCTTTCTTCTTCATCTTCTTCGAATTCTTTTTATTTTTTCTTTCTTCCTATTAGTGAGGCGGCAAGTCTTGTTCTTTTATTTGGAAGAGATTTTTGTAATCCTCCTTGCTCAAAGCAATTTAGGCAAATGGATCTTTCTTCTTTGGCTTTCTGGCCCTTTTCCCTTTTCTTTAATGAAAAGTCTGTCTCCTGTAACTGTGTGTGCATACTGCATATATATTTATATATAATTTCTTTTCATTTGATCTTTTGCGAAGATGTGAACCTATTGTCTCTAAGCCCTTGATTTTCTTCATGATCCTTATTGACCATTAGACCAATCCATAATGGTTACCATAGTTTTCATCTTTGTTAAGAATACATTTGAATTCTTAGTCCAATTCCAAAAACAAAAACTAGTTTTTGAAAACTAGTTTTTGAAAACTAGTTTTTGAAAACTATTTTTTTAGTTTTCAAAACCTGACTTTGTTTTTTGAAACATGAGAAGAAGGCAGATAACAAAACAAAGAAATTTACCTGTAGAAGTAGTGTTTATAAGCTTAATTTTAAAAAACAAAGAACTATAAACTAAAAACCAAATGATTATCAAAGGGGCTTTAATAGTTTGAGTCTTTATAAGAATATTTATCTAATTTTTGTGATACTGATAATGTTACAGGCCTCTGTGGTGGAGAGGTATGACAGACCAATGCCAAAGCTACGAAATACAGATGTAAAATCCAGTAAATACGAGGATCGGCCAGCTCCACCAGGCACTTTAAATGTAGCACAGATGCACCATGTAATTCTCCTGCATGAAGGAAAGGCTGACGATCATGATGGACCAATGGGCGTTCATCAAATTGCTGAAAGGTATAATGTCAGTGTTGCTCAAATACAGACGATTTTGCAGTTTCTGTCTCTGCCTCCAGAGGACAGTCTTAGAGAGAAAAAGAAGGATCCTAAATAA

mRNA sequence

ATGGGACAGGCATTTCGTCGGGCGGCTGGAAGAATCAAGCCGGCTTCGAGCATCGATTCCACTGCCTCTTCGTTGAAAATGGAGAGCGTCGTCGATCGGAAGCCTCCGCCGCGTGTGGTCGAGAAGGCTCGGGAGAGCGGCGCTCTTGATTCTGGTGGTGTCTCAGGAAGTAATTCGGGAAATGTGCTTGAAGAAAGAGATCCGCAGTTTGATGCCATGCTTAGCCAAATGGTGGGTCGAATTAAATCAAAGCCTGGAGGAAAACTTGAGATGGGAGAGGCCTCTGTGGTGGAGAGGTATGACAGACCAATGCCAAAGCTACGAAATACAGATGTAAAATCCAGTAAATACGAGGATCGGCCAGCTCCACCAGGCACTTTAAATGTAGCACAGATGCACCATGTAATTCTCCTGCATGAAGGAAAGGCTGACGATCATGATGGACCAATGGGCGTTCATCAAATTGCTGAAAGGTATAATGTCAGTGTTGCTCAAATACAGACGATTTTGCAGTTTCTGTCTCTGCCTCCAGAGGACAGTCTTAGAGAGAAAAAGAAGGATCCTAAATAA

Coding sequence (CDS)

ATGGGACAGGCATTTCGTCGGGCGGCTGGAAGAATCAAGCCGGCTTCGAGCATCGATTCCACTGCCTCTTCGTTGAAAATGGAGAGCGTCGTCGATCGGAAGCCTCCGCCGCGTGTGGTCGAGAAGGCTCGGGAGAGCGGCGCTCTTGATTCTGGTGGTGTCTCAGGAAGTAATTCGGGAAATGTGCTTGAAGAAAGAGATCCGCAGTTTGATGCCATGCTTAGCCAAATGGTGGGTCGAATTAAATCAAAGCCTGGAGGAAAACTTGAGATGGGAGAGGCCTCTGTGGTGGAGAGGTATGACAGACCAATGCCAAAGCTACGAAATACAGATGTAAAATCCAGTAAATACGAGGATCGGCCAGCTCCACCAGGCACTTTAAATGTAGCACAGATGCACCATGTAATTCTCCTGCATGAAGGAAAGGCTGACGATCATGATGGACCAATGGGCGTTCATCAAATTGCTGAAAGGTATAATGTCAGTGTTGCTCAAATACAGACGATTTTGCAGTTTCTGTCTCTGCCTCCAGAGGACAGTCTTAGAGAGAAAAAGAAGGATCCTAAATAA

Protein sequence

MGQAFRRAAGRIKPASSIDSTASSLKMESVVDRKPPPRVVEKARESGALDSGGVSGSNSGNVLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVERYDRPMPKLRNTDVKSSKYEDRPAPPGTLNVAQMHHVILLHEGKADDHDGPMGVHQIAERYNVSVAQIQTILQFLSLPPEDSLREKKKDPK

Homology

[Close]

BLAST of Lag0016774 vs. NCBI nr
Match: XP_023006464.1 (uncharacterized protein LOC111499180 [Cucurbita maxima])

HSP 1 Score: 337.0 bits (863), Expect = 1.0e-88
Identity = 170/189 (89.95%), Postives = 180/189 (95.24%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTASSLKMESVVDRKPPPRVVEKARESGALDSGGVSGSNSG 60
           MGQAFRRAAGRIKPASSIDS+ASSLKMESVVDRKPPPR  EKARESG+LDSG V GSNSG
Sbjct: 1   MGQAFRRAAGRIKPASSIDSSASSLKMESVVDRKPPPRAAEKARESGSLDSGDVLGSNSG 60

Query: 61  NVLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVERYDRPMPKLRNTDVKSSKYEDR 120
           NVLEERDPQFDAMLSQM GRI+SKPGGKLEMGEASVVERY+RPMPKLRNTD+KSSKYEDR
Sbjct: 61  NVLEERDPQFDAMLSQMAGRIRSKPGGKLEMGEASVVERYNRPMPKLRNTDLKSSKYEDR 120

Query: 121 PAPPGTLNVAQMHHVILLHEGKADDHDGPMGVHQIAERYNVSVAQIQTILQFLSLPPEDS 180
           PAPPGTLNVAQM H+ILLHEGKADDHDGPMGV+QIAERYNV V+QI+TILQFLSLPPEDS
Sbjct: 121 PAPPGTLNVAQMRHIILLHEGKADDHDGPMGVNQIAERYNVGVSQIRTILQFLSLPPEDS 180

Query: 181 LREKKKDPK 190
           LR+KKK  K
Sbjct: 181 LRDKKKGSK 189

[Close]

BLAST of Lag0016774 vs. NCBI nr
Match: XP_023547640.1 (uncharacterized protein LOC111806523 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.3 bits (856), Expect = 6.6e-88
Identity = 170/189 (89.95%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTASSLKMESVVDRKPPPRVVEKARESGALDSGGVSGSNSG 60
           MGQAFRRAAGRIKPASSIDS+ASSLKMESVVDRKPPPR VEKARESGALDSG   GSNS 
Sbjct: 1   MGQAFRRAAGRIKPASSIDSSASSLKMESVVDRKPPPRAVEKARESGALDSGDDLGSNSE 60

Query: 61  NVLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVERYDRPMPKLRNTDVKSSKYEDR 120
           NVLEERDPQFDAMLSQM GRI+SKPGGKLEMGEASVVERYDRPMP+LRNTD+KSSKYEDR
Sbjct: 61  NVLEERDPQFDAMLSQMAGRIRSKPGGKLEMGEASVVERYDRPMPRLRNTDLKSSKYEDR 120

Query: 121 PAPPGTLNVAQMHHVILLHEGKADDHDGPMGVHQIAERYNVSVAQIQTILQFLSLPPEDS 180
           PAPPGTLNVAQM H+ILLHEGKA+DHDGPMGV+QIAERYNV VAQI+TILQFLSLPPEDS
Sbjct: 121 PAPPGTLNVAQMRHIILLHEGKAEDHDGPMGVNQIAERYNVGVAQIRTILQFLSLPPEDS 180

Query: 181 LREKKKDPK 190
           LR+KKK  K
Sbjct: 181 LRDKKKGSK 189

[Close]

BLAST of Lag0016774 vs. NCBI nr
Match: KAG7013632.1 (hypothetical protein SDJN02_23799 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.0 bits (855), Expect = 8.7e-88
Identity = 169/189 (89.42%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTASSLKMESVVDRKPPPRVVEKARESGALDSGGVSGSNSG 60
           MGQAFRRAAGRIKPASSIDS+ASSLKMESVVDRKPPPR  EKARESGALDSG V GSNS 
Sbjct: 1   MGQAFRRAAGRIKPASSIDSSASSLKMESVVDRKPPPRAAEKARESGALDSGDVLGSNSE 60

Query: 61  NVLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVERYDRPMPKLRNTDVKSSKYEDR 120
           NVLEERDPQFDAMLSQM GRI+SKPGGKLEMGEASVVERYDRPMP+LRNTD+KSSKYEDR
Sbjct: 61  NVLEERDPQFDAMLSQMAGRIRSKPGGKLEMGEASVVERYDRPMPRLRNTDLKSSKYEDR 120

Query: 121 PAPPGTLNVAQMHHVILLHEGKADDHDGPMGVHQIAERYNVSVAQIQTILQFLSLPPEDS 180
           PAPPGTLNVAQM H+ILLHEGKA+DHDGPMGV+QIAERYNV VAQI+TILQFLSLPPEDS
Sbjct: 121 PAPPGTLNVAQMRHIILLHEGKAEDHDGPMGVNQIAERYNVGVAQIRTILQFLSLPPEDS 180

Query: 181 LREKKKDPK 190
           L++KKK  K
Sbjct: 181 LQDKKKGSK 189

[Close]

BLAST of Lag0016774 vs. NCBI nr
Match: XP_022958820.1 (uncharacterized protein LOC111459975 [Cucurbita moschata])

HSP 1 Score: 333.6 bits (854), Expect = 1.1e-87
Identity = 169/189 (89.42%), Postives = 179/189 (94.71%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDSTASSLKMESVVDRKPPPRVVEKARESGALDSGGVSGSNSG 60
           MGQAFRRAAGRIKPASSIDS+ASSLKMESVVDRKPPPR  EKARESGALDSG V GSNS 
Sbjct: 1   MGQAFRRAAGRIKPASSIDSSASSLKMESVVDRKPPPRAAEKARESGALDSGDVLGSNSE 60

Query: 61  NVLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVERYDRPMPKLRNTDVKSSKYEDR 120
           NVLEERDPQFDAMLSQM GRI+SKPGGKLEMGEASVVERYDRPMP+LRNTD+KSSKYEDR
Sbjct: 61  NVLEERDPQFDAMLSQMAGRIRSKPGGKLEMGEASVVERYDRPMPRLRNTDLKSSKYEDR 120

Query: 121 PAPPGTLNVAQMHHVILLHEGKADDHDGPMGVHQIAERYNVSVAQIQTILQFLSLPPEDS 180
           PAPPGTLNVAQM H++LLHEGKA+DHDGPMGV+QIAERYNV VAQI+TILQFLSLPPEDS
Sbjct: 121 PAPPGTLNVAQMRHIMLLHEGKAEDHDGPMGVNQIAERYNVGVAQIRTILQFLSLPPEDS 180

Query: 181 LREKKKDPK 190
           LR+KKK  K
Sbjct: 181 LRDKKKVSK 189

[Close]

BLAST of Lag0016774 vs. NCBI nr
Match: XP_011657169.1 (uncharacterized protein LOC101223121 [Cucumis sativus] >XP_031743505.1 uncharacterized protein LOC101223121 [Cucumis sativus] >KGN47188.1 hypothetical protein Csa_020957 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 169/188 (89.89%), Postives = 178/188 (94.68%), Query Frame = 0


Query: 1   MGQAFRRAAGRIKPASSIDS-TASSLKMESVVDRKPPPRVVEKARESGALDSGGVSGSNS 60
           MGQAFRRAAGRIKPASSIDS TASSLKMES+VDRKPPPRV EKARESGALDSG V  S+S
Sbjct: 1   MGQAFRRAAGRIKPASSIDSTTASSLKMESIVDRKPPPRVAEKARESGALDSGDVPASDS 60

Query: 61  GNVLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVERYDRPMPKLRNTDVKSSKYED 120
           GN+LEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVERY RPMPKLR+T++ SSKYED
Sbjct: 61  GNMLEERDPQFDAMLSQMVGRIKSKPGGKLEMGEASVVERYGRPMPKLRDTNISSSKYED 120

Query: 121 RPAPPGTLNVAQMHHVILLHEGKADDHDGPMGVHQIAERYNVSVAQIQTILQFLSLPPED 180
           RPAPPGTLNVAQM  +ILLHEGKADDHDGPMG+HQIAERYNVSVAQIQTILQFLSLPPED
Sbjct: 121 RPAPPGTLNVAQMRQIILLHEGKADDHDGPMGLHQIAERYNVSVAQIQTILQFLSLPPED 180

Query: 181 SLREKKKD 188
           SLR+K KD
Sbjct: 181 SLRDKIKD 188

The following BLAST results are available for this feature:

BLAST of Lag0016774 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006464.1	1.0e-88	89.95	uncharacterized protein LOC111499180 [Cucurbita maxima]	[more]
XP_023547640.1	6.6e-88	89.95	uncharacterized protein LOC111806523 [Cucurbita pepo subsp. pepo]	[more]
KAG7013632.1	8.7e-88	89.42	hypothetical protein SDJN02_23799 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022958820.1	1.1e-87	89.42	uncharacterized protein LOC111459975 [Cucurbita moschata]	[more]
XP_011657169.1	1.6e-86	89.89	uncharacterized protein LOC101223121 [Cucumis sativus] >XP_031743505.1 uncharact...	[more]

BLAST of Lag0016774 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69
None	No IPR available	PANTHER	PTHR36759:SF1	DYNEIN BETA CHAIN, CILIARY PROTEIN	coord: 1..186
None	No IPR available	PANTHER	PTHR36759	DYNEIN BETA CHAIN, CILIARY PROTEIN	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016774.1	Lag0016774.1	mRNA