Lag0016741 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016741
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPeroxidase
Locationchr12: 40807987 .. 40808388 (-)
RNA-Seq ExpressionLag0016741
SyntenyLag0016741
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAGATCAAAGATGCTTCTTCTTTCTTTCTTTGGGAAGACAGTGCAGATTCTGAGGTGGATAGATTATTATCTCTTCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTCGCTCCACCAGCTGCGATGATTATTCTAGTGACCTAAGAGCCCTTGATTTCCAAGATGATGGGGATCATGACGGAGGAGATCAAGCCGTCGATTTGATCGGTGATGGTCGGTCCGACCAGCTCGATGGAAGGCGGCGGAGCGGGGCGGCGTTGGAGTACAATTTCGACGAGGAGGAGGAGGAAGAAGAGTCGAGTAATAATGTCGGTGTGATTCGGAATATGAATGAAATGGAAGATAGGGTCTTTTGGGACACTTGCATGGCGGGAGGGTATCCATGA

mRNA sequence

ATGGACCAGATCAAAGATGCTTCTTCTTTCTTTCTTTGGGAAGACAGTGCAGATTCTGAGGTGGATAGATTATTATCTCTTCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTCGCTCCACCAGCTGCGATGATTATTCTAGTGACCTAAGAGCCCTTGATTTCCAAGATGATGGGGATCATGACGGAGGAGATCAAGCCGTCGATTTGATCGGTGATGGTCGGTCCGACCAGCTCGATGGAAGGCGGCGGAGCGGGGCGGCGTTGGAGTACAATTTCGACGAGGAGGAGGAGGAAGAAGAGTCGAGTAATAATGTCGGTGTGATTCGGAATATGAATGAAATGGAAGATAGGGTCTTTTGGGACACTTGCATGGCGGGAGGGTATCCATGA

Coding sequence (CDS)

ATGGACCAGATCAAAGATGCTTCTTCTTTCTTTCTTTGGGAAGACAGTGCAGATTCTGAGGTGGATAGATTATTATCTCTTCCTCATGAATTAGAATCTGCTGTGGATGATCAGGAGGATGCTCGCTCCACCAGCTGCGATGATTATTCTAGTGACCTAAGAGCCCTTGATTTCCAAGATGATGGGGATCATGACGGAGGAGATCAAGCCGTCGATTTGATCGGTGATGGTCGGTCCGACCAGCTCGATGGAAGGCGGCGGAGCGGGGCGGCGTTGGAGTACAATTTCGACGAGGAGGAGGAGGAAGAAGAGTCGAGTAATAATGTCGGTGTGATTCGGAATATGAATGAAATGGAAGATAGGGTCTTTTGGGACACTTGCATGGCGGGAGGGTATCCATGA

Protein sequence

MDQIKDASSFFLWEDSADSEVDRLLSLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGDHDGGDQAVDLIGDGRSDQLDGRRRSGAALEYNFDEEEEEEESSNNVGVIRNMNEMEDRVFWDTCMAGGYP
Homology
BLAST of Lag0016741 vs. NCBI nr
Match: KAA0033453.1 (hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa])

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-40
Identity = 105/142 (73.94%), Postives = 117/142 (82.39%), Query Frame = 0

Query: 1   MDQIKDASSFFLWEDSADSEVDRLLSLPHELESAV--DDQEDARSTSC--DDYS-SDLRA 60
           MDQIKDASSFFLWEDSADSEVD+LLS PHELESAV  DDQEDA S SC  +D+S  DLRA
Sbjct: 1   MDQIKDASSFFLWEDSADSEVDKLLSHPHELESAVDDDDQEDACSCSCNNNDFSIDDLRA 60

Query: 61  LDFQDDGDHDGG--DQAVDLIGDGRSDQLDGRRRSGAALEYNF--DEEEEEEESSNNVGV 120
           LDFQDDGD+     DQ + LIGDG      GRRRSGAAL+Y +  +EEEEEEESS++VGV
Sbjct: 61  LDFQDDGDNGDRDLDQDICLIGDG------GRRRSGAALKYGYEEEEEEEEEESSDDVGV 120

Query: 121 IRNMNEMEDRVFWDTCMAGGYP 134
           IRNMNEMED++FWDTCMAGGYP
Sbjct: 121 IRNMNEMEDKLFWDTCMAGGYP 136

BLAST of Lag0016741 vs. NCBI nr
Match: KAG6575041.1 (hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 92/132 (69.70%), Postives = 106/132 (80.30%), Query Frame = 0

Query: 4   IKDASSFFLWEDSADSEVDRLLSLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGD 63
           + +ASS FLWED+ADSEVDRLLS PH+LESAVDD EDARS SCDDY++D  A+D QDDGD
Sbjct: 1   MNNASSLFLWEDTADSEVDRLLSHPHQLESAVDDPEDARSCSCDDYATDRSAVDLQDDGD 60

Query: 64  HDGGDQAVDLIG-DGRSDQLDGRRRSGAALEYNFDE-EEEEEESSNNVGVIRNMNEMEDR 123
            D  D+AV   G D RS  LD  R SGA LEY+ +E EEEEEES+NNVG IR+MNEMED+
Sbjct: 61  GD-EDRAVGSTGDDARSSHLDETRPSGATLEYSSEEDEEEEEESNNNVGAIRDMNEMEDK 120

Query: 124 VFWDTCMAGGYP 134
           +FWDTCM GGYP
Sbjct: 121 LFWDTCMEGGYP 131

BLAST of Lag0016741 vs. NCBI nr
Match: KAE8646684.1 (hypothetical protein Csa_005604 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 3.9e-26
Identity = 84/125 (67.20%), Postives = 93/125 (74.40%), Query Frame = 0

Query: 16  SADSEVDRLLS-LPHELESAV---DDQEDARSTSCDDYSSDLRALDFQD--DGDHDGGDQ 75
           SADSEVD+LLS  PH+LESAV   DDQEDA S SC+  ++D    DFQD  DGD+  GDQ
Sbjct: 31  SADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCN--NNDFSIDDFQDAYDGDNGDGDQ 90

Query: 76  AVDLIGDGRSDQLDGRRRSGAALEYNFDEEEEEEESSNN-VGVIRNMNEMEDRVFWDTCM 134
            + LIGDG      GRRRSGA   Y  +EEEEEEESSNN VG IRNMNEMED+VFWDTCM
Sbjct: 91  DIGLIGDG------GRRRSGAG--YEEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTCM 145

BLAST of Lag0016741 vs. NCBI nr
Match: KDO74975.1 (hypothetical protein CISIN_1g032474mg [Citrus sinensis])

HSP 1 Score: 70.9 bits (172), Expect = 9.6e-09
Identity = 55/139 (39.57%), Postives = 75/139 (53.96%), Query Frame = 0

Query: 6   DASSFFLWEDSADSEVDRLL--SLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGD 65
           D SSF L E+SADSEVD L       +   A  D++DA S SCD        LD+    D
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDY----D 67

Query: 66  HDGGDQAVDLIGDGRSDQLDGRRR----SGAALEYNFDEEEEEEESSNNVGVIRNM---- 125
           H+  ++  D  GDG S   D  R+    S   + +    ++EEE SS ++G+  N+    
Sbjct: 68  HELKNEEFDDDGDGSS--TDQHRQINWSSSCKIWWADGADDEEEYSSWDIGINNNISRKV 127

Query: 126 -NEMEDRVFWDTCMAGGYP 134
            +EMEDR+FW+TCMA GYP
Sbjct: 128 KDEMEDRLFWETCMAFGYP 140

BLAST of Lag0016741 vs. NCBI nr
Match: GAY36063.1 (hypothetical protein CUMW_020050 [Citrus unshiu])

HSP 1 Score: 70.9 bits (172), Expect = 9.6e-09
Identity = 53/137 (38.69%), Postives = 75/137 (54.74%), Query Frame = 0

Query: 6   DASSFFLWEDSADSEVDRLL--SLPHELESAVDDQEDARSTSCDDYSSDLRALDFQDDGD 65
           D SSF L E+SADSEVD L       +   A  D++DA S SCD        LD+    D
Sbjct: 8   DVSSFVLVEESADSEVDSLTCEMCLRDAVMATGDEDDAESCSCDTIEMQAEGLDY----D 67

Query: 66  HDGGDQAVDLIGDGRSDQLDGRRRSGAALEYNFDE--EEEEEESSNNVGVIRNM-----N 125
           HD  ++  +  GDG S     +   G + +  + +  ++EEE SS ++G+  N+     +
Sbjct: 68  HDHKNEESNDDGDGSSTDQHRQINWGGSCKIWWADAADDEEEYSSWDIGINNNISRKVKD 127

Query: 126 EMEDRVFWDTCMAGGYP 134
           EMEDR+FW+TCMA GYP
Sbjct: 128 EMEDRLFWETCMAFGYP 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033453.11.6e-4073.94hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa][more]
KAG6575041.11.3e-3769.70hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646684.13.9e-2667.20hypothetical protein Csa_005604 [Cucumis sativus][more]
KDO74975.19.6e-0939.57hypothetical protein CISIN_1g032474mg [Citrus sinensis][more]
GAY36063.19.6e-0938.69hypothetical protein CUMW_020050 [Citrus unshiu][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..112
NoneNo IPR availablePANTHERPTHR35726:SF5SUBFAMILY NOT NAMEDcoord: 2..133
NoneNo IPR availablePANTHERPTHR35726GLUTAMIC ACID-RICH PROTEIN-LIKEcoord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016741.1Lag0016741.1mRNA