Lag0016736 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016736
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like
Location	chr12: 40761498 .. 40762519 (-)
RNA-Seq Expression	Lag0016736
Synteny	Lag0016736

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCGCAGTTGACGCTGCAGGAGATCCAATTCCTACATCGGCGGTGTTAATGTCCGCGTCAAAGCACATTGCGAATATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAAGAAGGACACAAACCCAGAGAAATGCCTCGATAAAGGCCAGCAAGTCACTCGCTGCGTCCTCTCCCTGTAAGTGAATAACATTTTGTTATTTTCTTAGCCAAAGCATCGATTCACCATTTTTCATATGTCCTGGTTTCTATGGTTGCTTGCTTTCCTCCGGATTGTTCCGGAAAATTGCTTTAGTGTATGCTATTCTTCTGATCTGCTAGCAAATAGAGGAGTAGGATATACATTGCTTTTAGTAATCTTATGATCTGCTCTGCTAGCAAATAGAGGAGTAGGATATACATTGCTTTAAGCAATCTTATGATCATCTTCTGACCCGCTAGCAAATAGAGGACTAGGAAACTAGGAAAGAAAATAAGAGTTATTTTTTAGATTTTGCATAAAGATGATTAGTACAGGTGCTGATAAAATTTTAGGTTGATAATCTTCTATCTGATTAAATTGATGGCGTGCATGGTCACTATCCGGGGTCACCCATTGACATCTAAGCCCCTTTTGCACAGTGGAAATAATGGACAGTGTGGAGGTCTTCCACATTTAGAAGGCACAATTACTTTCACTGTTCTTTGGGGTTTTAAATTGTAGTATGAAAATTCAATGAATTTCCTTGACAACCAAATGTTATCGGGTTAAGTACATTCAAGTTACTCGAATACTCATAGATATATGTATTAAAATAATTGTAATAGAGTCGGATACCGATAATGACTTAACTATCGCCACTATTAATTCTGATCCTACTCTCATAGTGAATAATGAAGCCCTCATGGAAAAGTCATTTGGAGAAGCAACTATGCTTTATCCAATGAAGAAAACAATCCTCATTCACTCAAAAATATTGGCCCTTCTACTGTCCCAGTTACTATTGCTTCAGATATTGTTGATAACAGCTAA

mRNA sequence

ATGGCGAGCGCAGTTGACGCTGCAGGAGATCCAATTCCTACATCGGCGGTGTTAATGTCCGCGTCAAAGCACATTGCGAATATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAAGAAGGACACAAACCCAGAGAAATGCCTCGATAAAGGCCAGCAAGTCACTCGCTGCGTCCTCTCCCTCCCTCATGGAAAAGTCATTTGGAGAAGCAACTATGCTTTATCCAATGAAGAAAACAATCCTCATTCACTCAAAAATATTGGCCCTTCTACTGTCCCAGTTACTATTGCTTCAGATATTGTTGATAACAGCTAA

Coding sequence (CDS)

ATGGCGAGCGCAGTTGACGCTGCAGGAGATCCAATTCCTACATCGGCGGTGTTAATGTCCGCGTCAAAGCACATTGCGAATATGTGTCGATCGGAGAATGTGGCATACCTCCAGTGCAAAAAGAAGGACACAAACCCAGAGAAATGCCTCGATAAAGGCCAGCAAGTCACTCGCTGCGTCCTCTCCCTCCCTCATGGAAAAGTCATTTGGAGAAGCAACTATGCTTTATCCAATGAAGAAAACAATCCTCATTCACTCAAAAATATTGGCCCTTCTACTGTCCCAGTTACTATTGCTTCAGATATTGTTGATAACAGCTAA

Protein sequence

MASAVDAAGDPIPTSAVLMSASKHIANMCRSENVAYLQCKKKDTNPEKCLDKGQQVTRCVLSLPHGKVIWRSNYALSNEENNPHSLKNIGPSTVPVTIASDIVDNS

Homology

[Close]

BLAST of Lag0016736 vs. NCBI nr
Match: XP_022958837.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023006426.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023548394.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo] >KAG7013612.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSASKHIANMCRSENVAYLQCKKKDTNPEKCLDKGQQVTRCV 60
          MASAVDAAGDPIPTSAVLMS+SKHIANMCRSENVAYLQCK+KD NPEKCLDKGQQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of Lag0016736 vs. NCBI nr
Match: XP_022138355.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSASKHIANMCRSENVAYLQCKKKDTNPEKCLDKGQQVTRCV 60
          MASAVDAAG+PIPTSAVLMS++KHIANMCRSENVAYLQCKKKD NPEKCLDKGQQVTRCV
Sbjct: 1  MASAVDAAGEPIPTSAVLMSSAKHIANMCRSENVAYLQCKKKDANPEKCLDKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of Lag0016736 vs. NCBI nr
Match: KAG6593937.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-24
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSASKHIANMCRSENVAYLQCKKKDTNPEKCLDKGQQVTRCV 60
          MASAVDAAGDPIPTSAVLMS+SKHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of Lag0016736 vs. NCBI nr
Match: XP_022930219.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_022930220.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita moschata] >XP_023000580.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023000581.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita maxima] >XP_023514408.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 6.5e-24
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSASKHIANMCRSENVAYLQCKKKDTNPEKCLDKGQQVTRCV 60
          MASAVDAAGDPIPTSAVLMS+SKHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1  MASAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of Lag0016736 vs. NCBI nr
Match: KAG7026281.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-23
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSASKHIANMCRSENVAYLQCKKKDTNPEKCLDKGQQVTRCV 60
          MA+AVDAAGDPIPTSAVLMS+SKHIANMCRSENVAYLQCK+KD NPEKCL+KGQQVTRCV
Sbjct: 1  MATAVDAAGDPIPTSAVLMSSSKHIANMCRSENVAYLQCKRKDPNPEKCLEKGQQVTRCV 60

Query: 61 LSL 64
          LSL
Sbjct: 61 LSL 63

[Close]

BLAST of Lag0016736 vs. ExPASy Swiss-Prot
Match: Q8LGE7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis thaliana OX=3702 GN=At5g18800 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-18
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  MASAVDAAGDPIPTSAVLMSASKHIANMCRSENVAYLQCKKKDTNPEKCLDKGQQVTRCV 60
          M+SAVDA G+PIPTSAVL +++KHI   C  ENVA+L+CKK D NPEKCLDKG+ VTRCV
Sbjct: 1  MSSAVDATGNPIPTSAVLTASAKHIGMRCMPENVAFLKCKKNDPNPEKCLDKGRDVTRCV 60

Query: 61 LSL 64
          L L
Sbjct: 61 LGL 63

[Close]

BLAST of Lag0016736 vs. ExPASy Swiss-Prot
Match: Q9SQT4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis thaliana OX=3702 GN=At3g06310 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.9e-16
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 3  SAVDAAGDPIPTSAVLMSASKHIANMCRSENVAYLQCKKKDTNPEKCLDKGQQVTRCVLS 62
          +AVD  G+PIPTSAVL +++KHI   C  EN+A+L+CKK D NPEKCL+KG+ VTRCVL 
Sbjct: 5  AAVDGTGNPIPTSAVLTASAKHIGIRCMPENMAFLKCKKNDPNPEKCLEKGRDVTRCVLG 64

Query: 63 L 64
          L
Sbjct: 65 L 65

The following BLAST results are available for this feature:

BLAST of Lag0016736 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958837.1	2.2e-24	95.24	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
XP_022138355.1	5.0e-24	93.65	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Momordica charan...	[more]
KAG6593937.1	6.5e-24	93.65	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbi...	[more]
XP_022930219.1	6.5e-24	93.65	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B-like [Cucurbita m...	[more]
KAG7026281.1	1.4e-23	92.06	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B, partial [Cucurbi...	[more]

BLAST of Lag0016736 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGE7	1.9e-18	69.84	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B OS=Arabidopsis th...	[more]
Q9SQT4	3.9e-16	63.93	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A OS=Arabidopsis th...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13344:SF2	CHCH-RELATED	coord: 1..63
IPR016680	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8	PANTHER	PTHR13344	NADH-UBIQUINONE OXIDOREDUCTASE	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016736.1	Lag0016736.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
cellular_component	GO:0005747	mitochondrial respiratory chain complex I