Lag0016734 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016734
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLow-density receptor-like protein
Locationchr12: 40748714 .. 40749081 (-)
RNA-Seq ExpressionLag0016734
SyntenyLag0016734
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGATCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGTCAGAACAAACAGACCGTGAAAGAAGGTGCGTTAATTTGATGTTAATTTTGTTTGCTTATGCTCGTCTGAGCTTTGTATGGACTTTGAATTCTTCGTTCTGGACCTGCATTTCAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCCCGATGGAAAGAAGGCCGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGA

mRNA sequence

ATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGATCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGTCAGAACAAACAGACCGTGAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCCCGATGGAAAGAAGGCCGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGA

Coding sequence (CDS)

ATGGCGTCGTCGACGGCTAGGATTACGTTTCGCGTTGTCATGGTGGTGATCCTCCTCCTCGTCCTTTTCTATGTCGGTCGTCCTCTGTACTGGAAGATTTCCGCCACTGTCCATGACATTCGTCAGAACAAACAGACCGTGAAAGAAGGTCTCTCTCAGATCGTTCTGGAAGCTCAGAAATCGGTGGGATGGTACCACGACGAGTCGGACTCGGGCGTCCCCGATGGAAAGAAGGCCGGATCGGTTGCTGCTCGGAGGCTGCTTCATCAGGTTTCGTGA

Protein sequence

MASSTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQKSVGWYHDESDSGVPDGKKAGSVAARRLLHQVS
Homology
[Close]
BLAST of Lag0016734 vs. NCBI nr
Match: KAG6593936.1 (hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.6 bits (418), Expect = 2.0e-37
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0 

Query: 1  MASSTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGV---PDGKKAGSVAARRLLHQVS 93
          SVGWYHDESDSGV    DGKKAGSVAARRLLHQVS
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQVS 95

[Close]
BLAST of Lag0016734 vs. NCBI nr
Match: XP_008458514.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 1  MASSTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVP---DGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQV 94

[Close]
BLAST of Lag0016734 vs. NCBI nr
Match: XP_008458516.1 (PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 5.8e-37
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 1  MASSTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASSTA+ITFRV+MVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTAKITFRVIMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVP---DGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVA RRLLHQ+
Sbjct: 61 SVGWYHDESDSGVQDGNDGKKAGSVAIRRLLHQM 94

[Close]
BLAST of Lag0016734 vs. NCBI nr
Match: XP_022930338.1 (uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata])

HSP 1 Score: 163.7 bits (413), Expect = 7.6e-37
Identity = 85/94 (90.43%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 1  MASSTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASS ARITFRVVMVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEG SQIVLEAQK
Sbjct: 1  MASSAARITFRVVMVVVLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGFSQIVLEAQK 60

Query: 61 SVGWYHDESDSGV---PDGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV    DGKKAGSVAARRLLHQ+
Sbjct: 61 SVGWYHDESDSGVHDGTDGKKAGSVAARRLLHQI 94

[Close]
BLAST of Lag0016734 vs. NCBI nr
Match: XP_022138556.1 (uncharacterized protein LOC111009689 [Momordica charantia])

HSP 1 Score: 163.3 bits (412), Expect = 9.9e-37
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 0 

Query: 1  MASSTARITFRVVMVVILLLVLFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60
          MASST RITFRV+MVV+LLLV+FYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK
Sbjct: 1  MASSTGRITFRVLMVVLLLLVIFYVGRPLYWKISATVHDIRQNKQTVKEGLSQIVLEAQK 60

Query: 61 SVGWYHDESDSGVPDGKKAGSVAARRLLHQV 92
          SVGWYHDESDSGV D KK GSVA RRLLHQV
Sbjct: 61 SVGWYHDESDSGVHDEKKVGSVATRRLLHQV 91

The following BLAST results are available for this feature:
BLAST of Lag0016734 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593936.12.0e-3791.58hypothetical protein SDJN03_13412, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008458514.12.6e-3792.55PREDICTED: uncharacterized protein LOC103497900 isoform X1 [Cucumis melo][more]
XP_008458516.15.8e-3791.49PREDICTED: uncharacterized protein LOC103497900 isoform X2 [Cucumis melo][more]
XP_022930338.17.6e-3790.43uncharacterized protein LOC111436812 isoform X3 [Cucurbita moschata][more]
XP_022138556.19.9e-3791.21uncharacterized protein LOC111009689 [Momordica charantia][more]
BLAST of Lag0016734 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016734.1Lag0016734.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane