Lag0016727 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016727
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCytochrome c oxidase assembly factor 4-like protein
Locationchr12: 40701513 .. 40702126 (-)
RNA-Seq ExpressionLag0016727
SyntenyLag0016727
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGCGACGCCGACGACGGCGATGAGAACGTCAAGCAGCTCAATGAATGCTCATCTCTCTACTTATCATTACAGGTTCTTCGTGGCCGTTGTGATCGTCATCTTCTTTTTTACGTTCTGCAATCTGCTAAAACCCTAAGCCCTGAAATGCATATTAATGCCTAGTGTTTTGATCTCCATAATTTTCAGGAATGCCTTATCAACACTAACAGAAACTGGAAATCTTGCCAGGCTGGTATGCCACTCATCTCTGAATGACCATCGTTTCACCAATTTAAGCATTTCTTCTCGTTCTAAATTCTAATTTTGCTTAGGTTCATCTTTGAATTCTATAGATTTTTCTTTTTGAAGCATTTATCCTTTAGATCGAACCGGAATTTATTGTGGCCATCTGCCAAGATCTTGCCTATTTCTTACGATTTTGAAACTTTAATTTTCAGTCTATATTGGGCAATTCTTTAAATTTTCATCTGAACGACTGTTTTTCTTCTAATTCATTGGTTTTTCTGGCAGAAGTTCACGCTTTGAAAGCTTGCAATGAGAGAAGAAAGACTGGCCCCAGCAAGTGA

mRNA sequence

ATGGGAAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGCGACGCCGACGACGGCGATGAGAACGTCAAGCAGCTCAATGAATGCTCATCTCTCTACTTATCATTACAGGAATGCCTTATCAACACTAACAGAAACTGGAAATCTTGCCAGGCTGAAGTTCACGCTTTGAAAGCTTGCAATGAGAGAAGAAAGACTGGCCCCAGCAAGTGA

Coding sequence (CDS)

ATGGGAAAACCGCCGATTTCGCCGGAGAATCAGCCGCCTCTTCACCGGAGCGACGCCGACGACGGCGATGAGAACGTCAAGCAGCTCAATGAATGCTCATCTCTCTACTTATCATTACAGGAATGCCTTATCAACACTAACAGAAACTGGAAATCTTGCCAGGCTGAAGTTCACGCTTTGAAAGCTTGCAATGAGAGAAGAAAGACTGGCCCCAGCAAGTGA

Protein sequence

MGKPPISPENQPPLHRSDADDGDENVKQLNECSSLYLSLQECLINTNRNWKSCQAEVHALKACNERRKTGPSK
Homology
BLAST of Lag0016727 vs. NCBI nr
Match: XP_004153368.1 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 6.6e-28
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1  MGKPPISPENQPPLHRSDADDGDENVKQLNECSSLYLSLQECLINTNRNWKSCQAEVHAL 60
          MGKPPISPENQPPLHRSDADD DENVKQLNECSS YLSLQ+CLI TNRNWKSCQAEV AL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGPSK 74
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

BLAST of Lag0016727 vs. NCBI nr
Match: XP_008458528.1 (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458529.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458530.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_016902266.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >KAA0033444.1 cytochrome c oxidase assembly factor 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1  MGKPPISPENQPPLHRSDADDGDENVKQLNECSSLYLSLQECLINTNRNWKSCQAEVHAL 60
          MGKPPISPEN+PPLHRSDADD DENVKQLNECSS YLSLQ+CLI TNRNWKSCQAEV AL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGPSK 74
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

BLAST of Lag0016727 vs. NCBI nr
Match: XP_022958916.1 (uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 uncharacterized protein LOC111499062 [Cucurbita maxima] >XP_023548597.1 uncharacterized protein LOC111807214 [Cucurbita pepo subsp. pepo] >KAG7013604.1 hypothetical protein SDJN02_23771 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 5.6e-27
Identity = 63/73 (86.30%), Postives = 63/73 (86.30%), Query Frame = 0

Query: 1  MGKPPISPENQPPLHRSDADDGDENVKQLNECSSLYLSLQECLINTNRNWKSCQAEVHAL 60
          MG PPISPENQPPLH SDAD  DENVKQLNECSS YLSLQECLI TNRNWK CQAEV AL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGPSK 74
          KACNERRKTG  K
Sbjct: 61 KACNERRKTGHGK 73

BLAST of Lag0016727 vs. NCBI nr
Match: XP_011656645.1 (uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >KAE8646682.1 hypothetical protein Csa_004822 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 0

Query: 1  MGKPPISPENQPPLHRSDADDGDENVKQLNECSSLYLSLQECLINTNRNWKSCQA-EVHA 60
          MGKPPISPENQPPLHRSDADD DENVKQLNECSS YLSLQ+CLI TNRNWKSCQA EV A
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAVEVQA 60

Query: 61 LKACNERRKTGPSK 74
          LK+C+ERRK+G  K
Sbjct: 61 LKSCSERRKSGQRK 74

BLAST of Lag0016727 vs. NCBI nr
Match: XP_038874602.1 (uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 uncharacterized protein LOC120067191 [Benincasa hispida])

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 60/73 (82.19%), Postives = 65/73 (89.04%), Query Frame = 0

Query: 1  MGKPPISPENQPPLHRSDADDGDENVKQLNECSSLYLSLQECLINTNRNWKSCQAEVHAL 60
          MGKPP SPENQPPLHRSDA+D DENVKQLNECSS YLSLQ+CLI TNRNWK+CQAEV AL
Sbjct: 1  MGKPPNSPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQAEVQAL 60

Query: 61 KACNERRKTGPSK 74
          K+C+ERRK G  K
Sbjct: 61 KSCSERRKPGQRK 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004153368.16.6e-2886.30cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumi... [more]
XP_008458528.11.9e-2784.93PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumi... [more]
XP_022958916.15.6e-2786.30uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 unchar... [more]
XP_011656645.11.6e-2685.14uncharacterized protein LOC101215408 isoform X1 [Cucumis sativus] >KAE8646682.1 ... [more]
XP_038874602.13.6e-2682.19uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 unchara... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR48236COX19-LIKE CHCH FAMILY PROTEINcoord: 3..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016727.1Lag0016727.1mRNA