Lag0016643 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016643
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function (DUF1677)
Locationchr12: 39851111 .. 39851512 (+)
RNA-Seq ExpressionLag0016643
SyntenyLag0016643
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCATGAGATAGAAGTTGTGAAGTGCGAGTGCTGTGGATTAAAAGAAGAATGCACACAAGATTACATCTCTCAAGTCAAGGCCAACTTCGAATCCAAATGGCTCTGCGGTCTCTGTTCTGAAGCGGTTCGCGATGAGATTTTCAGATCCAAGAATTTGAATTTGAATTTGAATAAGAAGAATCCGCCGCCGGCCGGAATTCAAGACGCCGTCACCGCCCACATGCTCTTCTGCCGCAAGTTCAAGTCTAATCCCGCCGTTAGAGTCGCCGACGCCATGAAGCAAATCTTGAGAAGGCGCTCTACCGACTTGTCGTCTTCTTCTTCCAATTCCAATTCCAGATCCGCTTCTTCTTCTTCCCAGGTTGGCGACATGTCGTCTTTCTCTTCTTTTCGATGA

mRNA sequence

ATGGATCATGAGATAGAAGTTGTGAAGTGCGAGTGCTGTGGATTAAAAGAAGAATGCACACAAGATTACATCTCTCAAGTCAAGGCCAACTTCGAATCCAAATGGCTCTGCGGTCTCTGTTCTGAAGCGGTTCGCGATGAGATTTTCAGATCCAAGAATTTGAATTTGAATTTGAATAAGAAGAATCCGCCGCCGGCCGGAATTCAAGACGCCGTCACCGCCCACATGCTCTTCTGCCGCAAGTTCAAGTCTAATCCCGCCGTTAGAGTCGCCGACGCCATGAAGCAAATCTTGAGAAGGCGCTCTACCGACTTGTCGTCTTCTTCTTCCAATTCCAATTCCAGATCCGCTTCTTCTTCTTCCCAGGTTGGCGACATGTCGTCTTTCTCTTCTTTTCGATGA

Coding sequence (CDS)

ATGGATCATGAGATAGAAGTTGTGAAGTGCGAGTGCTGTGGATTAAAAGAAGAATGCACACAAGATTACATCTCTCAAGTCAAGGCCAACTTCGAATCCAAATGGCTCTGCGGTCTCTGTTCTGAAGCGGTTCGCGATGAGATTTTCAGATCCAAGAATTTGAATTTGAATTTGAATAAGAAGAATCCGCCGCCGGCCGGAATTCAAGACGCCGTCACCGCCCACATGCTCTTCTGCCGCAAGTTCAAGTCTAATCCCGCCGTTAGAGTCGCCGACGCCATGAAGCAAATCTTGAGAAGGCGCTCTACCGACTTGTCGTCTTCTTCTTCCAATTCCAATTCCAGATCCGCTTCTTCTTCTTCCCAGGTTGGCGACATGTCGTCTTTCTCTTCTTTTCGATGA

Protein sequence

MDHEIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNPPPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSSSSSNSNSRSASSSSQVGDMSSFSSFR
Homology
BLAST of Lag0016643 vs. NCBI nr
Match: KAG7026232.1 (hypothetical protein SDJN02_12731, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.1 bits (466), Expect = 7.8e-43
Identity = 101/131 (77.10%), Postives = 110/131 (83.97%), Query Frame = 0

Query: 4   EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNP 63
           EIE VKCECCGLKEECTQ YISQVKANF++KWLCGLCS+AV DEIFRSKN         P
Sbjct: 3   EIETVKCECCGLKEECTQHYISQVKANFDAKWLCGLCSQAVHDEIFRSKN--------PP 62

Query: 64  PPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLS---SSSSNSNSRSASSS 123
           P AGIQDA+ AHMLFCRKFKSNPAVRVAD MKQILRRRS+DLS   SSS +S+S S+S+S
Sbjct: 63  PSAGIQDAIKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPSSSSSSSSTS 122

Query: 124 SQVGDMSSFSS 132
           SQV DMSSFSS
Sbjct: 123 SQVRDMSSFSS 125

BLAST of Lag0016643 vs. NCBI nr
Match: XP_038875601.1 (pre-mRNA-splicing factor CWC22 homolog [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 105/145 (72.41%), Postives = 117/145 (80.69%), Query Frame = 0

Query: 4   EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEI-FRSKNLNLNLNKKN 63
           EIEVVKCECCGLKEECT+DYIS+VKANF++KWLCGLCS+AV DEI FRSKN     N  +
Sbjct: 3   EIEVVKCECCGLKEECTKDYISEVKANFDAKWLCGLCSQAVGDEILFRSKN-----NHHS 62

Query: 64  PPPA--GIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSSSSSNSNSRSASS- 123
           PPP+  GIQDAV AHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSS SS+S+S S+++ 
Sbjct: 63  PPPSSGGIQDAVNAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSSQSSSSSSSSSTTT 122

Query: 124 -----------SSQVGDMSSFSSFR 134
                      SSQV DMSSFSS R
Sbjct: 123 NNFSTSNHSTPSSQVSDMSSFSSLR 142

BLAST of Lag0016643 vs. NCBI nr
Match: KAG6593885.1 (hypothetical protein SDJN03_13361, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 100/131 (76.34%), Postives = 110/131 (83.97%), Query Frame = 0

Query: 4   EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNP 63
           EIE VKCECCGLKEECTQ YIS+VKANF++KWLCGLCS+AV DEIFRSKN         P
Sbjct: 3   EIETVKCECCGLKEECTQQYISEVKANFDAKWLCGLCSQAVHDEIFRSKN--------PP 62

Query: 64  PPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLS---SSSSNSNSRSASSS 123
           P AGIQDA+ AHMLFCRKFKSNPAVRVAD MKQILRRRS+DLS   SSS +S+S S+S+S
Sbjct: 63  PSAGIQDAIKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPSSSSSSSSTS 122

Query: 124 SQVGDMSSFSS 132
           SQV DMSSFSS
Sbjct: 123 SQVRDMSSFSS 125

BLAST of Lag0016643 vs. NCBI nr
Match: XP_023514443.1 (uncharacterized protein LOC111778702 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.1 bits (453), Expect = 2.5e-41
Identity = 100/128 (78.12%), Postives = 106/128 (82.81%), Query Frame = 0

Query: 4   EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNP 63
           EIE VKCECCGLKEECTQ YISQVKANF++KWLCGLCSEAV DEIFRSK          P
Sbjct: 3   EIETVKCECCGLKEECTQHYISQVKANFDAKWLCGLCSEAVHDEIFRSK------TPPPP 62

Query: 64  PPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSSSSSNSNSRSASSSSQV 123
           P   IQDAV AHMLFCRKFKSNPAVRVAD MKQILRRRS+DLSSS S+S S S+S+SSQV
Sbjct: 63  PSTRIQDAVKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPS-SSSTSSQV 122

Query: 124 GDMSSFSS 132
            DMSSFSS
Sbjct: 123 RDMSSFSS 123

BLAST of Lag0016643 vs. NCBI nr
Match: XP_023000187.1 (uncharacterized protein LOC111494477 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-41
Identity = 97/122 (79.51%), Postives = 103/122 (84.43%), Query Frame = 0

Query: 4   EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNP 63
           EIE VKCECCGLKEECTQ YISQVKANF++KWLCGLCSEAV DEIFRSKN         P
Sbjct: 3   EIETVKCECCGLKEECTQHYISQVKANFDAKWLCGLCSEAVHDEIFRSKN--------PP 62

Query: 64  PPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSS--SSSNSNSRSASSSS 123
           P AGIQDAV AHMLFCRKFKSNPAVRVAD MKQILRRRS+DLSS  SSS S+S S+S+SS
Sbjct: 63  PSAGIQDAVKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPSSSSSSSTSS 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7026232.17.8e-4377.10hypothetical protein SDJN02_12731, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038875601.11.3e-4272.41pre-mRNA-splicing factor CWC22 homolog [Benincasa hispida][more]
KAG6593885.11.3e-4276.34hypothetical protein SDJN03_13361, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023514443.12.5e-4178.13uncharacterized protein LOC111778702 [Cucurbita pepo subsp. pepo][more]
XP_023000187.14.3e-4179.51uncharacterized protein LOC111494477 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012876Protein of unknown function DUF1677, plantPFAMPF07911DUF1677coord: 5..100
e-value: 6.4E-32
score: 109.8
IPR012876Protein of unknown function DUF1677, plantPANTHERPTHR33108OS01G0745000 PROTEINcoord: 4..129
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..133
NoneNo IPR availablePANTHERPTHR33108:SF2EXPRESSED PROTEINcoord: 4..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016643.1Lag0016643.1mRNA