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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATCATGAGATAGAAGTTGTGAAGTGCGAGTGCTGTGGATTAAAAGAAGAATGCACACAAGATTACATCTCTCAAGTCAAGGCCAACTTCGAATCCAAATGGCTCTGCGGTCTCTGTTCTGAAGCGGTTCGCGATGAGATTTTCAGATCCAAGAATTTGAATTTGAATTTGAATAAGAAGAATCCGCCGCCGGCCGGAATTCAAGACGCCGTCACCGCCCACATGCTCTTCTGCCGCAAGTTCAAGTCTAATCCCGCCGTTAGAGTCGCCGACGCCATGAAGCAAATCTTGAGAAGGCGCTCTACCGACTTGTCGTCTTCTTCTTCCAATTCCAATTCCAGATCCGCTTCTTCTTCTTCCCAGGTTGGCGACATGTCGTCTTTCTCTTCTTTTCGATGA mRNA sequence ATGGATCATGAGATAGAAGTTGTGAAGTGCGAGTGCTGTGGATTAAAAGAAGAATGCACACAAGATTACATCTCTCAAGTCAAGGCCAACTTCGAATCCAAATGGCTCTGCGGTCTCTGTTCTGAAGCGGTTCGCGATGAGATTTTCAGATCCAAGAATTTGAATTTGAATTTGAATAAGAAGAATCCGCCGCCGGCCGGAATTCAAGACGCCGTCACCGCCCACATGCTCTTCTGCCGCAAGTTCAAGTCTAATCCCGCCGTTAGAGTCGCCGACGCCATGAAGCAAATCTTGAGAAGGCGCTCTACCGACTTGTCGTCTTCTTCTTCCAATTCCAATTCCAGATCCGCTTCTTCTTCTTCCCAGGTTGGCGACATGTCGTCTTTCTCTTCTTTTCGATGA Coding sequence (CDS) ATGGATCATGAGATAGAAGTTGTGAAGTGCGAGTGCTGTGGATTAAAAGAAGAATGCACACAAGATTACATCTCTCAAGTCAAGGCCAACTTCGAATCCAAATGGCTCTGCGGTCTCTGTTCTGAAGCGGTTCGCGATGAGATTTTCAGATCCAAGAATTTGAATTTGAATTTGAATAAGAAGAATCCGCCGCCGGCCGGAATTCAAGACGCCGTCACCGCCCACATGCTCTTCTGCCGCAAGTTCAAGTCTAATCCCGCCGTTAGAGTCGCCGACGCCATGAAGCAAATCTTGAGAAGGCGCTCTACCGACTTGTCGTCTTCTTCTTCCAATTCCAATTCCAGATCCGCTTCTTCTTCTTCCCAGGTTGGCGACATGTCGTCTTTCTCTTCTTTTCGATGA Protein sequence MDHEIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNPPPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSSSSSNSNSRSASSSSQVGDMSSFSSFR
Homology
BLAST of Lag0016643 vs. NCBI nr
Match: KAG7026232.1 (hypothetical protein SDJN02_12731, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 184.1 bits (466), Expect = 7.8e-43 Identity = 101/131 (77.10%), Postives = 110/131 (83.97%), Query Frame = 0 Query: 4 EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNP 63 EIE VKCECCGLKEECTQ YISQVKANF++KWLCGLCS+AV DEIFRSKN P Sbjct: 3 EIETVKCECCGLKEECTQHYISQVKANFDAKWLCGLCSQAVHDEIFRSKN--------PP 62
Query: 64 PPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLS---SSSSNSNSRSASSS 123 P AGIQDA+ AHMLFCRKFKSNPAVRVAD MKQILRRRS+DLS SSS +S+S S+S+S Sbjct: 63 PSAGIQDAIKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPSSSSSSSSTS 122
Query: 124 SQVGDMSSFSS 132 SQV DMSSFSS Sbjct: 123 SQVRDMSSFSS 125
BLAST of Lag0016643 vs. NCBI nr
Match: XP_038875601.1 (pre-mRNA-splicing factor CWC22 homolog [Benincasa hispida]) HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42 Identity = 105/145 (72.41%), Postives = 117/145 (80.69%), Query Frame = 0 Query: 4 EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEI-FRSKNLNLNLNKKN 63 EIEVVKCECCGLKEECT+DYIS+VKANF++KWLCGLCS+AV DEI FRSKN N + Sbjct: 3 EIEVVKCECCGLKEECTKDYISEVKANFDAKWLCGLCSQAVGDEILFRSKN-----NHHS 62
Query: 64 PPPA--GIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSSSSSNSNSRSASS- 123 PPP+ GIQDAV AHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSS SS+S+S S+++ Sbjct: 63 PPPSSGGIQDAVNAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSSQSSSSSSSSSTTT 122
Query: 124 -----------SSQVGDMSSFSSFR 134 SSQV DMSSFSS R Sbjct: 123 NNFSTSNHSTPSSQVSDMSSFSSLR 142
BLAST of Lag0016643 vs. NCBI nr
Match: KAG6593885.1 (hypothetical protein SDJN03_13361, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42 Identity = 100/131 (76.34%), Postives = 110/131 (83.97%), Query Frame = 0 Query: 4 EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNP 63 EIE VKCECCGLKEECTQ YIS+VKANF++KWLCGLCS+AV DEIFRSKN P Sbjct: 3 EIETVKCECCGLKEECTQQYISEVKANFDAKWLCGLCSQAVHDEIFRSKN--------PP 62
Query: 64 PPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLS---SSSSNSNSRSASSS 123 P AGIQDA+ AHMLFCRKFKSNPAVRVAD MKQILRRRS+DLS SSS +S+S S+S+S Sbjct: 63 PSAGIQDAIKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPSSSSSSSSTS 122
Query: 124 SQVGDMSSFSS 132 SQV DMSSFSS Sbjct: 123 SQVRDMSSFSS 125
BLAST of Lag0016643 vs. NCBI nr
Match: XP_023514443.1 (uncharacterized protein LOC111778702 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 179.1 bits (453), Expect = 2.5e-41 Identity = 100/128 (78.12%), Postives = 106/128 (82.81%), Query Frame = 0 Query: 4 EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNP 63 EIE VKCECCGLKEECTQ YISQVKANF++KWLCGLCSEAV DEIFRSK P Sbjct: 3 EIETVKCECCGLKEECTQHYISQVKANFDAKWLCGLCSEAVHDEIFRSK------TPPPP 62
Query: 64 PPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSSSSSNSNSRSASSSSQV 123 P IQDAV AHMLFCRKFKSNPAVRVAD MKQILRRRS+DLSSS S+S S S+S+SSQV Sbjct: 63 PSTRIQDAVKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPS-SSSTSSQV 122
Query: 124 GDMSSFSS 132 DMSSFSS Sbjct: 123 RDMSSFSS 123
BLAST of Lag0016643 vs. NCBI nr
Match: XP_023000187.1 (uncharacterized protein LOC111494477 [Cucurbita maxima]) HSP 1 Score: 178.3 bits (451), Expect = 4.3e-41 Identity = 97/122 (79.51%), Postives = 103/122 (84.43%), Query Frame = 0 Query: 4 EIEVVKCECCGLKEECTQDYISQVKANFESKWLCGLCSEAVRDEIFRSKNLNLNLNKKNP 63 EIE VKCECCGLKEECTQ YISQVKANF++KWLCGLCSEAV DEIFRSKN P Sbjct: 3 EIETVKCECCGLKEECTQHYISQVKANFDAKWLCGLCSEAVHDEIFRSKN--------PP 62
Query: 64 PPAGIQDAVTAHMLFCRKFKSNPAVRVADAMKQILRRRSTDLSS--SSSNSNSRSASSSS 123 P AGIQDAV AHMLFCRKFKSNPAVRVAD MKQILRRRS+DLSS SSS S+S S+S+SS Sbjct: 63 PSAGIQDAVKAHMLFCRKFKSNPAVRVADGMKQILRRRSSDLSSSHSSSPSSSSSSSTSS 116
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7026232.1 | 7.8e-43 | 77.10 | hypothetical protein SDJN02_12731, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_038875601.1 | 1.3e-42 | 72.41 | pre-mRNA-splicing factor CWC22 homolog [Benincasa hispida] | [more] |
KAG6593885.1 | 1.3e-42 | 76.34 | hypothetical protein SDJN03_13361, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023514443.1 | 2.5e-41 | 78.13 | uncharacterized protein LOC111778702 [Cucurbita pepo subsp. pepo] | [more] |
XP_023000187.1 | 4.3e-41 | 79.51 | uncharacterized protein LOC111494477 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR012876 | Protein of unknown function DUF1677, plant | PFAM | PF07911 | DUF1677 | coord: 5..100 e-value: 6.4E-32 score: 109.8 |
IPR012876 | Protein of unknown function DUF1677, plant | PANTHER | PTHR33108 | OS01G0745000 PROTEIN | coord: 4..129 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 101..133 |
None | No IPR available | PANTHER | PTHR33108:SF2 | EXPRESSED PROTEIN | coord: 4..129 |
Relationships
The following mRNA feature(s) are a part of this gene:
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