Lag0016637 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016637
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AAI domain-containing protein
Location	chr12: 39775990 .. 39776679 (-)
RNA-Seq Expression	Lag0016637
Synteny	Lag0016637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGATAATTAGCGTCGTCGCATCGTTAATCGCGCTTCTCACGGCGTCGATGGCGGTGGTTGCGATGTCGCCGCCGACGGGATGCACCACTAGAGAGCTGCTCTTGCTCTCGCCATGTCTTCCTTTCATCTCTGCTCCGCCGAACAATCTTTCTGATACGGTTCCCTCTGCGTGCTGCGAGGCGTTCTCTTCCGCTTACGATTCCGGCGGCGGTATTTGCCTCTGTTACTTTCTTCGAGAGCCTCAGATTTTGGGCTTCCCGTTGAATAGTACGAAGCTGATCGCTCTGTCTTCGTTTTGTCCTCACACTGACGGAATGTATTTGGAGAAGAATAGTTCCCTGGACTCGCTCTGTGCCGGTATGAGTTCGAAAAGCTGTCTTCTCTCTCTGTCTCTCTCGTTCTTTATTGATCACTGGAATTTCTTGATTCTTGATCTTCGTCGGTTTTGATTTGGAATCCTTGATTCTAGCAATACTTGTTTTCCGGTGGTTTTATCAGAAATATTTAATCAAGGACTGCTTAATTTGTAAATTTATGTAATGTTTGTGTAATCAGCTTCACGGACTCTGCCTCCCCTTCAAAGCTCGAAGATTCCAGGAATCGAAGAGCCTAACAGTCCTGGTAATTCTCTTCTGATTTCTTGTTATATGTATTTCATCAATGTGGATTATCAGAGCAAATAG

mRNA sequence

ATGGCGGCGATAATTAGCGTCGTCGCATCGTTAATCGCGCTTCTCACGGCGTCGATGGCGGTGGTTGCGATGTCGCCGCCGACGGGATGCACCACTAGAGAGCTGCTCTTGCTCTCGCCATGTCTTCCTTTCATCTCTGCTCCGCCGAACAATCTTTCTGATACGGTTCCCTCTGCGTGCTGCGAGGCGTTCTCTTCCGCTTACGATTCCGGCGGCGGTATTTGCCTCTGTTACTTTCTTCGAGAGCCTCAGATTTTGGGCTTCCCGTTGAATAGTACGAAGCTGATCGCTCTGTCTTCGTTTTGTCCTCACACTGACGGAATGTATTTGGAGAAGAATAGTTCCCTGGACTCGCTCTGTGCCGCTTCACGGACTCTGCCTCCCCTTCAAAGCTCGAAGATTCCAGGAATCGAAGAGCCTAACAGTCCTGGTAATTCTCTTCTGATTTCTTGTTATATGTATTTCATCAATGTGGATTATCAGAGCAAATAG

Coding sequence (CDS)

ATGGCGGCGATAATTAGCGTCGTCGCATCGTTAATCGCGCTTCTCACGGCGTCGATGGCGGTGGTTGCGATGTCGCCGCCGACGGGATGCACCACTAGAGAGCTGCTCTTGCTCTCGCCATGTCTTCCTTTCATCTCTGCTCCGCCGAACAATCTTTCTGATACGGTTCCCTCTGCGTGCTGCGAGGCGTTCTCTTCCGCTTACGATTCCGGCGGCGGTATTTGCCTCTGTTACTTTCTTCGAGAGCCTCAGATTTTGGGCTTCCCGTTGAATAGTACGAAGCTGATCGCTCTGTCTTCGTTTTGTCCTCACACTGACGGAATGTATTTGGAGAAGAATAGTTCCCTGGACTCGCTCTGTGCCGCTTCACGGACTCTGCCTCCCCTTCAAAGCTCGAAGATTCCAGGAATCGAAGAGCCTAACAGTCCTGGTAATTCTCTTCTGATTTCTTGTTATATGTATTTCATCAATGTGGATTATCAGAGCAAATAG

Protein sequence

MAAIISVVASLIALLTASMAVVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDTVPSACCEAFSSAYDSGGGICLCYFLREPQILGFPLNSTKLIALSSFCPHTDGMYLEKNSSLDSLCAASRTLPPLQSSKIPGIEEPNSPGNSLLISCYMYFINVDYQSK

Homology

[Close]

BLAST of Lag0016637 vs. NCBI nr
Match: XP_022959376.1 (uncharacterized protein LOC111460365 [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 7.8e-61
Identity = 123/143 (86.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MAAIISVVASLIALLTASMAVVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDTVPSAC 60
           MA  ISV+ SLIA+LTASMA+VAMSPPTGCTTRELLLLSPCLPFISAPPNNLSD+VPS+C
Sbjct: 1   MAVFISVLKSLIAVLTASMAMVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDSVPSSC 60

Query: 61  CEAFSSAYDSGGGICLCYFLREPQILGFPLNSTKLIALSSFCPHTDGMYLEKNSSLDSLC 120
           CEAFSSAY SGGGICLCYFLR+PQILGFPLN+TKLIALSS CP +DG +LE NSSLDSLC
Sbjct: 61  CEAFSSAYGSGGGICLCYFLRDPQILGFPLNNTKLIALSSICPLSDGTHLEMNSSLDSLC 120

Query: 121 AASRTLPPLQSSKIPGIEEPNSP 144
           +ASRTLPPLQSSKIPGI+EP+SP
Sbjct: 121 SASRTLPPLQSSKIPGIQEPDSP 143

[Close]

BLAST of Lag0016637 vs. NCBI nr
Match: KAG7013541.1 (hypothetical protein SDJN02_23707, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244.2 bits (622), Expect = 7.8e-61
Identity = 123/143 (86.01%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MAAIISVVASLIALLTASMAVVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDTVPSAC 60
           MA  ISV+ SLIA+LTASMA+VAMSPPTGCTTRELLLLSPCLPFISAPPNNLSD+VPS+C
Sbjct: 1   MAVFISVLKSLIAVLTASMAMVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDSVPSSC 60

Query: 61  CEAFSSAYDSGGGICLCYFLREPQILGFPLNSTKLIALSSFCPHTDGMYLEKNSSLDSLC 120
           CEAFSSAY SGGGICLCYFLR+PQILGFPLN+TKLIALSS CP +DG +LE NSSLDSLC
Sbjct: 61  CEAFSSAYGSGGGICLCYFLRDPQILGFPLNNTKLIALSSICPLSDGTHLEMNSSLDSLC 120

Query: 121 AASRTLPPLQSSKIPGIEEPNSP 144
           +ASRTLPPLQSSKIPGI+EP+SP
Sbjct: 121 SASRTLPPLQSSKIPGIQEPDSP 143

[Close]

BLAST of Lag0016637 vs. NCBI nr
Match: KAG6574972.1 (hypothetical protein SDJN03_25611, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.9 bits (616), Expect = 3.9e-60
Identity = 122/143 (85.31%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MAAIISVVASLIALLTASMAVVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDTVPSAC 60
           MA  ISV+ SLI +LTASMA+VAMSPPTGCTTRELLLLSPCLPFISAPPNNLSD+VPS+C
Sbjct: 1   MAVFISVLKSLIVVLTASMAMVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDSVPSSC 60

Query: 61  CEAFSSAYDSGGGICLCYFLREPQILGFPLNSTKLIALSSFCPHTDGMYLEKNSSLDSLC 120
           CEAFSSAY SGGGICLCYFLR+PQILGFPLN+TKLIALSS CP +DG +LE NSSLDSLC
Sbjct: 61  CEAFSSAYGSGGGICLCYFLRDPQILGFPLNNTKLIALSSTCPLSDGTHLEMNSSLDSLC 120

Query: 121 AASRTLPPLQSSKIPGIEEPNSP 144
           +ASRTLPPLQSSKIPGI+EP+SP
Sbjct: 121 SASRTLPPLQSSKIPGIQEPDSP 143

[Close]

BLAST of Lag0016637 vs. NCBI nr
Match: XP_023006001.1 (uncharacterized protein LOC111498879 [Cucurbita maxima])

HSP 1 Score: 239.2 bits (609), Expect = 2.5e-59
Identity = 121/143 (84.62%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MAAIISVVASLIALLTASMAVVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDTVPSAC 60
           MA  ISVV  LIA+LTASM +VAMSPPT CTTRELLLLSPCLPFISAPPNNLSD+VPS+C
Sbjct: 1   MAVFISVVKLLIAILTASMVMVAMSPPTRCTTRELLLLSPCLPFISAPPNNLSDSVPSSC 60

Query: 61  CEAFSSAYDSGGGICLCYFLREPQILGFPLNSTKLIALSSFCPHTDGMYLEKNSSLDSLC 120
           CEAFSSAY SGGGICLCYFLR+PQILGFPLN+TKL ALSS CP +DG +LEKNSSLDSLC
Sbjct: 61  CEAFSSAYGSGGGICLCYFLRDPQILGFPLNNTKLTALSSICPLSDGTHLEKNSSLDSLC 120

Query: 121 AASRTLPPLQSSKIPGIEEPNSP 144
           +ASRTLPPLQSSKIPGI+EP+SP
Sbjct: 121 SASRTLPPLQSSKIPGIQEPDSP 143

[Close]

BLAST of Lag0016637 vs. NCBI nr
Match: XP_038874252.1 (non-specific lipid transfer protein GPI-anchored 25 [Benincasa hispida])

HSP 1 Score: 235.3 bits (599), Expect = 3.6e-58
Identity = 124/148 (83.78%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MAAIISVVASLIALLTASMAVVAMS-PPTGCTTRELLLLSPCLPFISAPPNNLSDTVPSA 60
           MAAIIS+V  L+A LT SMAVVAMS PPTGC TRELLLLSPCLPFISAPPNNLSDTVPSA
Sbjct: 1   MAAIISIVTMLMAFLTTSMAVVAMSPPPTGCATRELLLLSPCLPFISAPPNNLSDTVPSA 60

Query: 61  CCEAFSSAYDSGGGICLCYFLREPQILGFPLNSTKLIALSSFCP--HTDGMYLEKNSSLD 120
           CCEAFSSAY SGGGICLCYFLREPQILGFPLN TKLIALSSFCP     GMYLEK+SSLD
Sbjct: 61  CCEAFSSAYSSGGGICLCYFLREPQILGFPLNRTKLIALSSFCPLNGESGMYLEKSSSLD 120

Query: 121 SLCAASRTLPPLQSSKIPGIEEPNSPGN 146
           S+CAASRTLPPL SS+IP I+EP+SP +
Sbjct: 121 SICAASRTLPPLHSSRIPRIQEPDSPAD 148

[Close]

BLAST of Lag0016637 vs. ExPASy Swiss-Prot
Match: F4JIG1 (Non-specific lipid transfer protein GPI-anchored 25 OS=Arabidopsis thaliana OX=3702 GN=LTPG25 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 59/130 (45.38%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 4   IISVVASLIALLTASMAVVAMSPPTGCTTRELLLLSPCLPFISAPPNNLSDTVPSACCEA 63
           I+++  S  + +TA+    + SPP    T EL++ SPCLP++S+PPNN+S+T    CC  
Sbjct: 12  ILTITFSSSSAVTATQQAPSSSPPVLTCTEELVMFSPCLPYVSSPPNNMSETPDPICCSV 71

Query: 64  FSSAYDSGGGICLCYFLREPQILGFPLNSTKLIALSSFCPHTDGMYLEKNSSLDSLCAAS 123
           F+S+  S  G CLCY LR+P ILGFPL+ ++LI+LS  C  TD        S +SLC+ S
Sbjct: 72  FTSSVHSSTGNCLCYLLRQPMILGFPLDRSRLISLSQIC--TD---QNSEESFESLCSVS 131

Query: 124 RT--LPPLQS 132
            +  LPPLQS
Sbjct: 132 ESPELPPLQS 136

The following BLAST results are available for this feature:

BLAST of Lag0016637 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959376.1	7.8e-61	86.01	uncharacterized protein LOC111460365 [Cucurbita moschata]	[more]
KAG7013541.1	7.8e-61	86.01	hypothetical protein SDJN02_23707, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6574972.1	3.9e-60	85.31	hypothetical protein SDJN03_25611, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023006001.1	2.5e-59	84.62	uncharacterized protein LOC111498879 [Cucurbita maxima]	[more]
XP_038874252.1	3.6e-58	83.78	non-specific lipid transfer protein GPI-anchored 25 [Benincasa hispida]	[more]

BLAST of Lag0016637 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIG1	1.5e-22	45.38	Non-specific lipid transfer protein GPI-anchored 25 OS=Arabidopsis thaliana OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 13..105 e-value: 3.6E-7 score: 30.2
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 28..107 e-value: 2.3E-8 score: 35.8
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 34..107
None	No IPR available	PANTHER	PTHR35747	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN	coord: 2..144
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 38..102 e-value: 4.32024E-7 score: 43.1843

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016637.1	Lag0016637.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane