Lag0016622 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016622
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Epidermal patterning factor-like protein
Location	chr12: 39638278 .. 39638727 (+)
RNA-Seq Expression	Lag0016622
Synteny	Lag0016622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTAGTCCTCCTCCACTACCACCGCACCCACCACCGTCGCCGCCGTCGCCCCACTCTTTTTCTCCTCGCCGCCGTTCTCCTCCTCCTCATAGCCTCCGCCATTGCCGCCCGCCCCACACCCATCAGTAAGTTTCCAAATTTATTCCATTTCCAATTGTTTCTTCTAAACCCCATCTCTCAATTCCTCTAATCAGCCCATCTTTTGTGTTTGTTCTAAAAAAAAACAGAGGAAACAGAGCTGCCCGGCGGAGCAGAGGAGCGAGGCGTGACACGGCGGAGACTCGCCGGACCGGGGTCGTCGCCGCCGACTTGTAGATCGAAGTGCGGCAGTTGCTCGCCGTGCACGGCGGTGCACGTGCCAATTCAGCCGGGACTGAGTTTGCCGTTGGAATATTACCCCGAAGCTTGGCGGTGCAAATGCGGCAACTCGCTTTATATGCCATGA

mRNA sequence

ATGGCCGTAGTCCTCCTCCACTACCACCGCACCCACCACCGTCGCCGCCGTCGCCCCACTCTTTTTCTCCTCGCCGCCGTTCTCCTCCTCCTCATAGCCTCCGCCATTGCCGCCCGCCCCACACCCATCAAGGAAACAGAGCTGCCCGGCGGAGCAGAGGAGCGAGGCGTGACACGGCGGAGACTCGCCGGACCGGGGTCGTCGCCGCCGACTTGTAGATCGAAGTGCGGCAGTTGCTCGCCGTGCACGGCGGTGCACGTGCCAATTCAGCCGGGACTGAGTTTGCCGTTGGAATATTACCCCGAAGCTTGGCGGTGCAAATGCGGCAACTCGCTTTATATGCCATGA

Coding sequence (CDS)

ATGGCCGTAGTCCTCCTCCACTACCACCGCACCCACCACCGTCGCCGCCGTCGCCCCACTCTTTTTCTCCTCGCCGCCGTTCTCCTCCTCCTCATAGCCTCCGCCATTGCCGCCCGCCCCACACCCATCAAGGAAACAGAGCTGCCCGGCGGAGCAGAGGAGCGAGGCGTGACACGGCGGAGACTCGCCGGACCGGGGTCGTCGCCGCCGACTTGTAGATCGAAGTGCGGCAGTTGCTCGCCGTGCACGGCGGTGCACGTGCCAATTCAGCCGGGACTGAGTTTGCCGTTGGAATATTACCCCGAAGCTTGGCGGTGCAAATGCGGCAACTCGCTTTATATGCCATGA

Protein sequence

MAVVLLHYHRTHHRRRRRPTLFLLAAVLLLLIASAIAARPTPIKETELPGGAEERGVTRRRLAGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP

Homology

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BLAST of Lag0016622 vs. NCBI nr
Match: XP_023000566.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita maxima])

HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MAVVLLHYHRTHHRRRRRPTLFLLAAVLLLLIASAIAARPTPIKETELPGGAEERGVTRR 60
           MAVVLLH+H  HHRRRR PTLFL A VLLL  ASAIAARPTPIKET+LP G EER VTRR
Sbjct: 1   MAVVLLHHHHNHHRRRRLPTLFLFAVVLLL--ASAIAARPTPIKETQLPTGGEERVVTRR 60

Query: 61  RLAGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           RL+GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSLYMP
Sbjct: 61  RLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 113

[Close]

BLAST of Lag0016622 vs. NCBI nr
Match: XP_023513820.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.5 bits (519), Expect = 4.8e-49
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MAVVLLHYHRTHHRRRRRPTLFLLAAVLLLLIASAIAARPTPIKETELPGGAEERGVTRR 60
           MAVVLLH+H  HHRRR  PTLFL A VLLLL ASAIAARPTPIKET+LP G EER VTRR
Sbjct: 1   MAVVLLHHHHNHHRRRCLPTLFLFAVVLLLL-ASAIAARPTPIKETQLPTGGEERVVTRR 60

Query: 61  RLAGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           RL+GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSLYMP
Sbjct: 61  RLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 114

[Close]

BLAST of Lag0016622 vs. NCBI nr
Match: XP_022930459.1 (EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita moschata])

HSP 1 Score: 203.8 bits (517), Expect = 8.2e-49
Identity = 100/118 (84.75%), Postives = 105/118 (88.98%), Query Frame = 0


Query: 1   MAVVLLHYHRTHHRRRRRPTLFLLAAV---LLLLIASAIAARPTPIKETELPGGAEERGV 60
           MAVVLLH+H  HHRRRR PTLFL A V   LLLL+ASAIAARPTPIKET+L  G EER V
Sbjct: 1   MAVVLLHHHHNHHRRRRLPTLFLFAVVLLLLLLLLASAIAARPTPIKETQLLTGGEERVV 60

Query: 61  TRRRLAGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           TRRRL+GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSLYMP
Sbjct: 61  TRRRLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 118

[Close]

BLAST of Lag0016622 vs. NCBI nr
Match: KAG6593874.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MAVVLLHYHRTHHRRRRRPTLFLLAAVLLLLIASAIAARPTPIKETELPGGAEERGVTRR 60
           MAVVLLH+H  HHRRRR PTLFL A VLLLL+ SAIAARPTPIKET+L  G EER VTRR
Sbjct: 1   MAVVLLHHHHNHHRRRRLPTLFLFAVVLLLLV-SAIAARPTPIKETQLLTGGEERVVTRR 60

Query: 61  RLAGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           RL+GPGSSPPTCRSKCGSC+PCTAVHVPI PGLSLPLEYYPEAWRCKCGNSLYMP
Sbjct: 61  RLSGPGSSPPTCRSKCGSCTPCTAVHVPIHPGLSLPLEYYPEAWRCKCGNSLYMP 114

[Close]

BLAST of Lag0016622 vs. NCBI nr
Match: XP_008449315.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo] >KAA0057450.1 EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa] >TYK30149.1 EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.5e-37
Identity = 86/118 (72.88%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MAVVLLHYHRTHHRRRRRPTLFLLAAVLLLLIASAIAARPTPI---KETELPGGAEERGV 60
           MAV+LL     HH RR   TLF     LLLL+ S+IAARPTPI    E +LP G  ER +
Sbjct: 1   MAVLLL-----HHCRRTHLTLF-----LLLLLTSSIAARPTPIDEEAEAKLPAGTRERVL 60

Query: 61  TRRRLAGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           TRRRL GPGSSPPTCRSKCGSC PCTAVHVPIQPGLSLPLEYYPEAWRCKCGN+LYMP
Sbjct: 61  TRRRLTGPGSSPPTCRSKCGSCRPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNTLYMP 108

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BLAST of Lag0016622 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.6e-26
Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 14  RRRRRPTLFLLAAVL------LLLIASAIAARPTPIKE---TELPGGAEERGVTRRRLAG 73
           RRRRR   FLLAA++      L   +S ++A    I +   ++LPGG      + +R  G
Sbjct: 5   RRRRR---FLLAALVTFALLHLFSASSIVSADGRWIGQRTGSDLPGGFIR---SNKRFGG 64

Query: 74  PGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           PGSSPPTCRSKCG C PC  VHVPIQPGLS+PLEYYPEAWRCKCGN L+MP
Sbjct: 65  PGSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLFMP 109

[Close]

BLAST of Lag0016622 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.5e-24
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 19  PTLFLLAAVLLLLIASAIA-ARPT--------PIKETELPGGAEERGVTRRRLAGPGSSP 78
           PTL + A +L    +SA +  RP+         I  + LPG    + V ++RL GPGS P
Sbjct: 6   PTLIVYAFLLFFSSSSAASLQRPSGGLGQGKKEIARSGLPG----QIVDQKRLGGPGSVP 65

Query: 79  PTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           P CR KCG C PC AVHVPIQPGL +PLEYYPEAWRCKCGN L+MP
Sbjct: 66  PMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107

[Close]

BLAST of Lag0016622 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-20
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 43  IKETELPGGAEERGVTRRRLAGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPE 102
           IK+T   G   +    RR L G GSSPP C SKCG C+PC  VHVP+ PG  +  EYYPE
Sbjct: 84  IKKTRKIGDRSKEAELRRILRGLGSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPE 143

Query: 103 AWRCKCGNSLYMP 116
           AWRCKCGN LYMP
Sbjct: 144 AWRCKCGNKLYMP 156

[Close]

BLAST of Lag0016622 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.6e-07
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 67  SSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           SSPP C++KC  C PC    + + P  + P +YYP+ W C C N +Y P
Sbjct: 468 SSPPNCKNKCKGCQPCKPKLIIVHP--NKPQDYYPQKWVCSCHNKIYNP 514

[Close]

BLAST of Lag0016622 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.2e-07
Identity = 22/53 (41.51%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 63  AGPGSSPPTCRSKCGSCSPCTAVHVPIQPGLSLPLEYYPEAWRCKCGNSLYMP 116
           A   SSPP C++KC  C PC    + + P  + P +YYP+ W C C N +Y P
Sbjct: 457 ASLNSSPPNCKNKCKGCQPCKPKLIIVHP--NQPEDYYPQRWVCSCHNKIYNP 507

The following BLAST results are available for this feature:

BLAST of Lag0016622 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000566.1	1.7e-49	86.96	EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita maxima]	[more]
XP_023513820.1	4.8e-49	86.96	EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita pepo subsp. pepo]	[more]
XP_022930459.1	8.2e-49	84.75	EPIDERMAL PATTERNING FACTOR-like protein 5 [Cucurbita moschata]	[more]
KAG6593874.1	1.1e-48	86.09	EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs...	[more]
XP_008449315.1	2.5e-37	72.88	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo] >KAA0057450...	[more]

BLAST of Lag0016622 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V3I3	4.6e-26	57.66	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	9.5e-24	54.72	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q1PEY6	1.3e-20	60.27	EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q7M1E7	3.6e-07	42.86	Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1	[more]
Q9FY19	6.2e-07	41.51	Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 65..115 e-value: 4.7E-20 score: 71.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..74
None	No IPR available	PANTHER	PTHR33109:SF55	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 51..115
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 51..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016622.1	Lag0016622.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane