Lag0016612 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016612
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionguanine nucleotide-binding protein subunit gamma 2-like
Locationchr12: 39559732 .. 39561360 (-)
RNA-Seq ExpressionLag0016612
SyntenyLag0016612
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGAATCGGCGAGCCCGATAACCCAACGGGTTCAGTCTTCTTCTTCTTCTTCTTCTTCTTCAATTGATACCAGAGGAAAACATAGGATACAGGCTGAAGTGAAGCGGCTCGAGCAAGAAGCAAGGTTTCTGGAGGTTAGTCCCCTTTTGTTTCTTTCGTTTGAGGTTTTTGATCGATTTTGACTGTGTTGTGCTGAATTCTCACTTCCCGATTGTTTAAACGCCCATTTCTGAAGTTGGGTACTCGAGAAATTTTGATTGGAGTTTGAGCTGTAATGTGAATTAGCTCTGTAGTTCTTTTTCAATTGTTTCTGGATGAAGTAATTGCTCTGAAGTGTTAGTGTTGTGCTAGTGTTCATGTTTATTTTGATTCTGTTCTGATAGTTCTTAAGGGAAACTGTCAAAATTTGTGGGGCATCTGAGTCCTTGCTTAGTGCCACTGTTGTGGATGTTGATGTCCATAACATAGTTGTAAATTGAATGAAAATTTTCAGTGATTTGTGCTTTGAAAACTTCTGAATATGTTGCTCAGTTATAACATTTAGAGATAAGCAGATTATCTTTGTTCTTACAGCTGGAAAATTATGGTGGTGAAATGAGAATTATTGGCTCAAGAGAAATCTTCTGTTTCAATCTTGAAGATAAAAATTAAGAATGATGTTCCTTGTTTTTCCTGTTCACTTTTATTTTGAGCAGAAGATTCAAATACCTACTTGTATACCTCTCTTGAAGGTTTTGAGAATCATCACTTGAAAAGTTTAAACTTGAAACTCCTATTAAATCATCACTAGATTCAAAAGTTTAACCTTAAAAATTAAGAAGGATGTTCACTACTAATATGCAGCGATAGAGTGAACTGCGTTCGATAGATGTAAAATTAAAACTCCTATTAGATCACCCCTAGATTCAAAAGTTTAGATTATTAAGCTAGAGTAGACTTCATTGGGCTTCTTGATTGTGATTATTAGCATCGATTCGTAAAGTGGTGTCGATTGGCAGAGTGGAAGTACATTCAAATTCACATCGGTTTTAAGGGGGATTAATTATGTGTACCATTTATGAATTCTAATGCAGGAAGAACTGGAACAGCTAGATAAACTGGACAAGGCATCAACAAAATGCAAAGAGTAAGCATGATAAAATTTATTAAGGATCTGCTGAATTGAGTATCCATTAGAAAAAACACACACACAAACAATGTATGAAACTCTCCAATTCATTTGTGAAATTGCTGTTTTTGAACCTGTCAGAATGCTGAGCAATGTGGAGACAAGACCAGACCCACTTCTCCCACAGTAGGATCTCTGTTCTCTCTTTAAACTCACAGCTTTGTTTGTCTTCAACAACAGACCTTGAAAGATAAAAACCATCTTCTTCTGTCTCTGTTTTTTGTTGGTTGCAGAACCCACGGCCCTTTAAATCCGCTGTGGGATCGATGGTTCGAAGGGCCGCAAGATTCTAAAGGTTGCAGATGCTGGATATTGTGATGGTGTTTGAATTTCTCTTTGAATTCATACAGATTGGGAGATTGTGATGTTGATGATGGTGGATGATCATGGGCTCTACTACTTTGAAGATTTTAACTCCCATTCTCATTTGTTGTTTGCAGAGGTTTCTTCAACTTAG

mRNA sequence

ATGTCCGAATCGGCGAGCCCGATAACCCAACGGGTTCAGTCTTCTTCTTCTTCTTCTTCTTCTTCAATTGATACCAGAGGAAAACATAGGATACAGGCTGAAGTGAAGCGGCTCGAGCAAGAAGCAAGGTTTCTGGAGTTCTTAAGGGAAACTGTCAAAATTTGTGGGGCATCTGAGTCCTTGCTTAGTGCCACTGTTGTGGATGTTGATGTCCATAACATAGTTGAAGAACTGGAACAGCTAGATAAACTGGACAAGGCATCAACAAAATGCAAAGAAATGCTGAGCAATGTGGAGACAAGACCAGACCCACTTCTCCCACAAACCCACGGCCCTTTAAATCCGCTGTGGGATCGATGGTTCGAAGGGCCGCAAGATTCTAAAGATTGGGAGATTGTGATGTTGATGATGGTGGATGATCATGGGCTCTACTACTTTGAAGATTTTAACTCCCATTCTCATTTGTTGTTTGCAGAGGTTTCTTCAACTTAG

Coding sequence (CDS)

ATGTCCGAATCGGCGAGCCCGATAACCCAACGGGTTCAGTCTTCTTCTTCTTCTTCTTCTTCTTCAATTGATACCAGAGGAAAACATAGGATACAGGCTGAAGTGAAGCGGCTCGAGCAAGAAGCAAGGTTTCTGGAGTTCTTAAGGGAAACTGTCAAAATTTGTGGGGCATCTGAGTCCTTGCTTAGTGCCACTGTTGTGGATGTTGATGTCCATAACATAGTTGAAGAACTGGAACAGCTAGATAAACTGGACAAGGCATCAACAAAATGCAAAGAAATGCTGAGCAATGTGGAGACAAGACCAGACCCACTTCTCCCACAAACCCACGGCCCTTTAAATCCGCTGTGGGATCGATGGTTCGAAGGGCCGCAAGATTCTAAAGATTGGGAGATTGTGATGTTGATGATGGTGGATGATCATGGGCTCTACTACTTTGAAGATTTTAACTCCCATTCTCATTTGTTGTTTGCAGAGGTTTCTTCAACTTAG

Protein sequence

MSESASPITQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASESLLSATVVDVDVHNIVEELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRWFEGPQDSKDWEIVMLMMVDDHGLYYFEDFNSHSHLLFAEVSST
Homology
BLAST of Lag0016612 vs. NCBI nr
Match: XP_038875185.1 (guanine nucleotide-binding protein subunit gamma 2-like [Benincasa hispida])

HSP 1 Score: 166.4 bits (420), Expect = 2.1e-37
Identity = 95/128 (74.22%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 1   MSESASPITQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASES 60
           MSESASPITQRVQ  SSSSSSSIDTRGKHRIQAEVKRLEQEARFLE              
Sbjct: 1   MSESASPITQRVQ--SSSSSSSIDTRGKHRIQAEVKRLEQEARFLE-------------- 60

Query: 61  LLSATVVDVDVHNIVEELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRW 120
                          EELEQLDKLDKASTKCKEMLSNVETRPDPLLP THGP+NPLWDRW
Sbjct: 61  ---------------EELEQLDKLDKASTKCKEMLSNVETRPDPLLPLTHGPINPLWDRW 97

Query: 121 FEGPQDSK 129
           FEGPQDSK
Sbjct: 121 FEGPQDSK 97

BLAST of Lag0016612 vs. NCBI nr
Match: KAG6574952.1 (hypothetical protein SDJN03_25591, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 2.7e-37
Identity = 94/128 (73.44%), Postives = 94/128 (73.44%), Query Frame = 0

Query: 1   MSESASPITQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASES 60
           MSES SPI QRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEAR LE              
Sbjct: 1   MSESTSPIAQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARILE-------------- 60

Query: 61  LLSATVVDVDVHNIVEELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRW 120
                          EELEQLDKLDKASTKCKEMLSNVETRPDPLLPQT GPLNPLWDRW
Sbjct: 61  ---------------EELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTRGPLNPLWDRW 99

Query: 121 FEGPQDSK 129
           FEGP DSK
Sbjct: 121 FEGPPDSK 99

BLAST of Lag0016612 vs. NCBI nr
Match: KAG7013518.1 (Guanine nucleotide-binding protein subunit gamma 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 2.7e-37
Identity = 94/128 (73.44%), Postives = 94/128 (73.44%), Query Frame = 0

Query: 1   MSESASPITQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASES 60
           MSES SPI QRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEAR LE              
Sbjct: 1   MSESTSPIAQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARILE-------------- 60

Query: 61  LLSATVVDVDVHNIVEELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRW 120
                          EELEQLDKLDKASTKCKEMLSNVETRPDPLLPQT GPLNPLWDRW
Sbjct: 61  ---------------EELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTRGPLNPLWDRW 99

Query: 121 FEGPQDSK 129
           FEGP DSK
Sbjct: 121 FEGPPDSK 99

BLAST of Lag0016612 vs. NCBI nr
Match: XP_004150567.1 (guanine nucleotide-binding protein subunit gamma 2 [Cucumis sativus] >KGN61655.1 hypothetical protein Csa_006431 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.6e-37
Identity = 94/128 (73.44%), Postives = 96/128 (75.00%), Query Frame = 0

Query: 1   MSESASPITQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASES 60
           MS+SASPITQRVQ  SSSSSSSIDTRGKHRIQAEVKRLEQEARFLE              
Sbjct: 1   MSQSASPITQRVQ--SSSSSSSIDTRGKHRIQAEVKRLEQEARFLE-------------- 60

Query: 61  LLSATVVDVDVHNIVEELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRW 120
                          EELEQLDKLDKASTKCKEMLSNVETRPDPLLP THGP+NPLWDRW
Sbjct: 61  ---------------EELEQLDKLDKASTKCKEMLSNVETRPDPLLPLTHGPINPLWDRW 97

Query: 121 FEGPQDSK 129
           FEGPQDSK
Sbjct: 121 FEGPQDSK 97

BLAST of Lag0016612 vs. NCBI nr
Match: XP_023006763.1 (guanine nucleotide-binding protein subunit gamma 2 [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36
Identity = 93/128 (72.66%), Postives = 93/128 (72.66%), Query Frame = 0

Query: 1   MSESASPITQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASES 60
           MSES SPI QRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEAR LE              
Sbjct: 1   MSESTSPIAQRVQSSSSSSSSSIDTRGKHRIQAEVKRLEQEARILE-------------- 60

Query: 61  LLSATVVDVDVHNIVEELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRW 120
                          EELEQLDKLDKASTKCKEML NVETRPDPLLPQT GPLNPLWDRW
Sbjct: 61  ---------------EELEQLDKLDKASTKCKEMLINVETRPDPLLPQTRGPLNPLWDRW 99

Query: 121 FEGPQDSK 129
           FEGP DSK
Sbjct: 121 FEGPPDSK 99

BLAST of Lag0016612 vs. ExPASy Swiss-Prot
Match: Q93V47 (Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis thaliana OX=3702 GN=GG2 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-23
Identity = 58/115 (50.43%), Postives = 72/115 (62.61%), Query Frame = 0

Query: 14  SSSSSSSSSIDTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASESLLSATVVDVDVHN 73
           SS   S   +DTRGKHRIQAE+KRLEQEARFLE                           
Sbjct: 8   SSGQLSGRVVDTRGKHRIQAELKRLEQEARFLE--------------------------- 67

Query: 74  IVEELEQLDKLDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRWFEGPQDSK 129
             EELEQL+K+D AS  CKE L +V+++PDPLLP+T GP+N  WD+WFEGP+++K
Sbjct: 68  --EELEQLEKMDNASASCKEFLDSVDSKPDPLLPETTGPVNATWDQWFEGPKEAK 93

BLAST of Lag0016612 vs. ExPASy Swiss-Prot
Match: B8AN27 (Guanine nucleotide-binding protein subunit gamma 1 OS=Oryza sativa subsp. indica OX=39946 GN=RGG1 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-18
Identity = 50/103 (48.54%), Postives = 59/103 (57.28%), Query Frame = 0

Query: 24  DTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASESLLSATVVDVDVHNIVEELEQLDK 83
           DTRG+HRIQAE+K+LEQEARFLE                             EELE+LDK
Sbjct: 11  DTRGRHRIQAELKKLEQEARFLE-----------------------------EELEELDK 70

Query: 84  LDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRWFEGPQD 127
            DK S   +E++   E++ DPLLP T GP    WDRWFEGPQD
Sbjct: 71  TDKVSAALQELMVTAESKADPLLPVTTGPACQSWDRWFEGPQD 84

BLAST of Lag0016612 vs. ExPASy Swiss-Prot
Match: Q75WU1 (Guanine nucleotide-binding protein subunit gamma 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RGG1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-18
Identity = 50/103 (48.54%), Postives = 59/103 (57.28%), Query Frame = 0

Query: 24  DTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASESLLSATVVDVDVHNIVEELEQLDK 83
           DTRG+HRIQAE+K+LEQEARFLE                             EELE+LDK
Sbjct: 11  DTRGRHRIQAELKKLEQEARFLE-----------------------------EELEELDK 70

Query: 84  LDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRWFEGPQD 127
            DK S   +E++   E++ DPLLP T GP    WDRWFEGPQD
Sbjct: 71  TDKVSAALQELMVTAESKADPLLPVTTGPACQSWDRWFEGPQD 84

BLAST of Lag0016612 vs. ExPASy Swiss-Prot
Match: Q9FDX9 (Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis thaliana OX=3702 GN=GG1 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 44/109 (40.37%), Postives = 58/109 (53.21%), Query Frame = 0

Query: 27  GKHRIQAEVKRLEQEARFLEFLRETVKICGASESLLSATVVDVDVHNIVEELEQLDKLDK 86
           GKHRI AE+ R+EQE  FLE                             +EL++++  D 
Sbjct: 19  GKHRILAELARVEQEVAFLE-----------------------------KELKEVENTDI 78

Query: 87  ASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRWFEGPQDSKDWEIVML 136
            ST C+E+LS +E  PDPLLP T+GPLN  WDRWFEGP   +    ++L
Sbjct: 79  VSTVCEELLSVIEKGPDPLLPLTNGPLNLGWDRWFEGPNGGEGCRCLIL 98

BLAST of Lag0016612 vs. ExPASy Swiss-Prot
Match: A2X0N9 (Guanine nucleotide-binding protein subunit gamma 2 OS=Oryza sativa subsp. indica OX=39946 GN=RGG2 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 32/107 (29.91%), Postives = 53/107 (49.53%), Query Frame = 0

Query: 22  SIDTRGKHRIQAEVKRLEQEARFLEFLRETVKICGASESLLSATVVDVDVHNIVEELEQL 81
           S+   GKHR+ A + RL+QE + L+                             +EL +L
Sbjct: 60  SVGYVGKHRLSAAIARLDQELQSLQ-----------------------------DELNEL 119

Query: 82  DKLDKASTKCKEMLSNVETRPDPLLPQTHGPLNPLWDRWFEGPQDSK 129
           + ++ AS  C+ ++++ E + DPLLP T GP N  W+RWF+  + S+
Sbjct: 120 ETMEPASAACQGVITSTEGKSDPLLPVTIGPENASWERWFQRVRSSR 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875185.12.1e-3774.22guanine nucleotide-binding protein subunit gamma 2-like [Benincasa hispida][more]
KAG6574952.12.7e-3773.44hypothetical protein SDJN03_25591, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7013518.12.7e-3773.44Guanine nucleotide-binding protein subunit gamma 2 [Cucurbita argyrosperma subsp... [more]
XP_004150567.14.6e-3773.44guanine nucleotide-binding protein subunit gamma 2 [Cucumis sativus] >KGN61655.1... [more]
XP_023006763.11.3e-3672.66guanine nucleotide-binding protein subunit gamma 2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q93V473.9e-2350.43Guanine nucleotide-binding protein subunit gamma 2 OS=Arabidopsis thaliana OX=37... [more]
B8AN278.5e-1848.54Guanine nucleotide-binding protein subunit gamma 1 OS=Oryza sativa subsp. indica... [more]
Q75WU18.5e-1848.54Guanine nucleotide-binding protein subunit gamma 1 OS=Oryza sativa subsp. japoni... [more]
Q9FDX95.7e-1440.37Guanine nucleotide-binding protein subunit gamma 1 OS=Arabidopsis thaliana OX=37... [more]
A2X0N91.4e-0729.91Guanine nucleotide-binding protein subunit gamma 2 OS=Oryza sativa subsp. indica... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 28..48
NoneNo IPR availableSMARTSM01224G_gamma_2coord: 63..132
e-value: 1.3E-4
score: 31.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR32378:SF12GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 2coord: 3..47
NoneNo IPR availablePANTHERPTHR32378:SF12GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 2coord: 74..131
NoneNo IPR availablePANTHERPTHR32378GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3coord: 3..47
NoneNo IPR availablePANTHERPTHR32378GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT GAMMA 3coord: 74..131
IPR015898G-protein gamma-like domainPFAMPF00631G-gammacoord: 76..123
e-value: 6.9E-7
score: 29.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016612.1Lag0016612.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G protein-coupled receptor signaling pathway