Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCACCGTCTCCTTCTCCGGCGATCTCAATCTCGAAGCCACCGAGCTCCGCCTCGGCCTCCCCGGCGACGGGCTCGTCCGAACCAACAAGAGAAATTCCCAGAACGACTCTGCTCCTCCGCCCAAGTAAGTCCCGGCGATTCCTCCGACCGATCTCTAACTCTTCTGCTGTTTGGTTCGTATTTTGAGACTCAATTTCTGTTCTGTGATGTGGGTTTTCCAGGGCGCAGGTTGTCGGATGGCCGCCGATTAGATCTTTCAGGAAAAACACTCTTCAGGTCAAGAAGACCGAGGCGACGGCGGCGTCACCGGCGGCGGACGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTACTTGAGGAAGATTGATTTGAGCCTTTACAAAGGCTACCCTGAACTTCTCAAGGGTTTAGAGGACATGTTTAAATTCACCGTCGGTCAGTACTCTGAGAGAGAAGGCTATAAGGGATCTGAATTTGCTCCGACTTACGAAGATAAAGATGGCGATTGGATGCTCGTCGGCGATGTTCCATGGGAGTAAGTGATTTGATTTTAAAGCTCTGTTTCGAATTTGTATGTAAATTTAGAGAATATTCCGTAGCTTATTTATGTATTTTAAATGCAGAATGTTCATTTCATCTTGTAAGAGGATGAGAATCATGAAAGGATCTGAAGTTGGGGGACTCAGTTCTGGCGTATGA
mRNA sequence
ATGGATTCCACCGTCTCCTTCTCCGGCGATCTCAATCTCGAAGCCACCGAGCTCCGCCTCGGCCTCCCCGGCGACGGGCTCGTCCGAACCAACAAGAGAAATTCCCAGAACGACTCTGCTCCTCCGCCCAAGGCGCAGGTTGTCGGATGGCCGCCGATTAGATCTTTCAGGAAAAACACTCTTCAGGTCAAGAAGACCGAGGCGACGGCGGCGTCACCGGCGGCGGACGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTACTTGAGGAAGATTGATTTGAGCCTTTACAAAGGCTACCCTGAACTTCTCAAGGGTTTAGAGGACATGTTTAAATTCACCGTCGGTCAGTACTCTGAGAGAGAAGGCTATAAGGGATCTGAATTTGCTCCGACTTACGAAGATAAAGATGGCGATTGGATGCTCGTCGGCGATGTTCCATGGGAAATGTTCATTTCATCTTGTAAGAGGATGAGAATCATGAAAGGATCTGAAGTTGGGGGACTCAGTTCTGGCGTATGA
Coding sequence (CDS)
ATGGATTCCACCGTCTCCTTCTCCGGCGATCTCAATCTCGAAGCCACCGAGCTCCGCCTCGGCCTCCCCGGCGACGGGCTCGTCCGAACCAACAAGAGAAATTCCCAGAACGACTCTGCTCCTCCGCCCAAGGCGCAGGTTGTCGGATGGCCGCCGATTAGATCTTTCAGGAAAAACACTCTTCAGGTCAAGAAGACCGAGGCGACGGCGGCGTCACCGGCGGCGGACGGCGGAGGGATTTATGTGAAAGTGAGTATGGATGGAGCTCCTTACTTGAGGAAGATTGATTTGAGCCTTTACAAAGGCTACCCTGAACTTCTCAAGGGTTTAGAGGACATGTTTAAATTCACCGTCGGTCAGTACTCTGAGAGAGAAGGCTATAAGGGATCTGAATTTGCTCCGACTTACGAAGATAAAGATGGCGATTGGATGCTCGTCGGCGATGTTCCATGGGAAATGTTCATTTCATCTTGTAAGAGGATGAGAATCATGAAAGGATCTGAAGTTGGGGGACTCAGTTCTGGCGTATGA
Protein sequence
MDSTVSFSGDLNLEATELRLGLPGDGLVRTNKRNSQNDSAPPPKAQVVGWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELLKGLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGSEVGGLSSGV
Homology
BLAST of Lag0016600 vs. NCBI nr
Match:
XP_038875234.1 (auxin-induced protein 22B-like [Benincasa hispida])
HSP 1 Score: 308.5 bits (789), Expect = 3.6e-80
Identity = 156/189 (82.54%), Postives = 163/189 (86.24%), Query Frame = 0
Query: 1 MDSTVSFSGDLNLEATELRLGLPG------------DGLVR-TNKRNSQNDSAPPPKAQV 60
M+S V+F DLNLEATELRLGLPG G+++ NKRN DSAPPPKAQV
Sbjct: 1 MESKVAFQNDLNLEATELRLGLPGIVTERDDPAENSSGVIKPNNKRNFHKDSAPPPKAQV 60
Query: 61 VGWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELL 120
VGWPPIRSFRKNTLQVKKTEAT A AADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELL
Sbjct: 61 VGWPPIRSFRKNTLQVKKTEATMA--AADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELL 120
Query: 121 KGLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGS 177
K LEDMFKFT+GQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPW+MFISSCKRMRIMKGS
Sbjct: 121 KALEDMFKFTIGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGS 180
BLAST of Lag0016600 vs. NCBI nr
Match:
XP_004150434.1 (auxin-induced protein 22B [Cucumis sativus] >KGN61645.1 hypothetical protein Csa_006659 [Cucumis sativus])
HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 153/188 (81.38%), Postives = 161/188 (85.64%), Query Frame = 0
Query: 1 MDSTVSFSGDLNLEATELRLGLPG------------DGLVRTNKRNSQNDSAPPPKAQVV 60
M+S V+F DLNLEATELRLGLPG + NKRN QNDSAPPPKAQVV
Sbjct: 1 MESNVTFHNDLNLEATELRLGLPGIVSERDDSSATSSAVKPNNKRNFQNDSAPPPKAQVV 60
Query: 61 GWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELLK 120
GWPPIRSFRKNTLQVKKTEAT + A DGGGIYVKVSMDGAPYLRKIDLS+YKGYPELLK
Sbjct: 61 GWPPIRSFRKNTLQVKKTEAT--TTAVDGGGIYVKVSMDGAPYLRKIDLSVYKGYPELLK 120
Query: 121 GLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGSE 177
LEDMFKFT+GQYSEREGYKGS+FAPTYEDKDGDWMLVGDVPW+MFISSCKRMRIMKGSE
Sbjct: 121 ALEDMFKFTIGQYSEREGYKGSDFAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSE 180
BLAST of Lag0016600 vs. NCBI nr
Match:
XP_008449289.1 (PREDICTED: auxin-induced protein 22B [Cucumis melo] >KAA0057481.1 auxin-induced protein 22B [Cucumis melo var. makuwa] >TYK30177.1 auxin-induced protein 22B [Cucumis melo var. makuwa])
HSP 1 Score: 306.6 bits (784), Expect = 1.4e-79
Identity = 153/188 (81.38%), Postives = 160/188 (85.11%), Query Frame = 0
Query: 1 MDSTVSFSGDLNLEATELRLGLPG------------DGLVRTNKRNSQNDSAPPPKAQVV 60
M+S V+F DLNLEATELRLGLPG + NKRN QNDSAPPPKAQVV
Sbjct: 1 MESNVTFHNDLNLEATELRLGLPGVVSERDDSSAASSAVKPNNKRNFQNDSAPPPKAQVV 60
Query: 61 GWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELLK 120
GWPPIRSFRKNTLQVKKTEAT A A DGGGIYVKVSMDGAPYLRKIDLS+YKGYPE LK
Sbjct: 61 GWPPIRSFRKNTLQVKKTEATTA--AVDGGGIYVKVSMDGAPYLRKIDLSVYKGYPEFLK 120
Query: 121 GLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGSE 177
LEDMFKFT+GQYSEREGYKGS+FAPTYEDKDGDWMLVGDVPW+MFISSCKRMRIMKGSE
Sbjct: 121 ALEDMFKFTIGQYSEREGYKGSDFAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSE 180
BLAST of Lag0016600 vs. NCBI nr
Match:
XP_022138413.1 (auxin-responsive protein IAA4-like [Momordica charantia])
HSP 1 Score: 293.5 bits (750), Expect = 1.2e-75
Identity = 145/188 (77.13%), Postives = 156/188 (82.98%), Query Frame = 0
Query: 1 MDSTVSFSGDLNLEATELRLGLPG------------DGLVRTNKRNSQNDSAPPPKAQVV 60
M++ + F LNLEATELRLGLPG VRTNKRN QNDSAPPPKAQVV
Sbjct: 35 MEAKIGFESGLNLEATELRLGLPGSIADERRDSGENSSGVRTNKRNFQNDSAPPPKAQVV 94
Query: 61 GWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELLK 120
GWPPIRSFRKNTLQ KKTEA A A+GGG +VKVSMDGAPYLRKIDL +YKGYPELLK
Sbjct: 95 GWPPIRSFRKNTLQAKKTEAAA---TAEGGGSFVKVSMDGAPYLRKIDLGVYKGYPELLK 154
Query: 121 GLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGSE 177
LEDMFKFT+GQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPW+MFI SCKR+RIM+GS+
Sbjct: 155 ALEDMFKFTIGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWQMFILSCKRLRIMRGSD 214
BLAST of Lag0016600 vs. NCBI nr
Match:
XP_022975486.1 (auxin-induced protein 22B-like [Cucurbita maxima])
HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75
Identity = 146/183 (79.78%), Postives = 159/183 (86.89%), Query Frame = 0
Query: 1 MDSTVSFSGDLNLEATELRLGLPG-DGL------VRTNKRNSQNDSAPPPKAQVVGWPPI 60
MDS +SF LNLEAT+LRLGLPG DG VRTNKRN QN SAPPPK+QVVGWPPI
Sbjct: 1 MDSQLSFQNHLNLEATQLRLGLPGIDGSADNSCGVRTNKRNLQNHSAPPPKSQVVGWPPI 60
Query: 61 RSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELLKGLEDM 120
RSFRKNTL KKTEAT AA+GGGIYVKVSMDGAPYLRK+DL +YKGYPEL+KGLE+M
Sbjct: 61 RSFRKNTLLPKKTEATT---AAEGGGIYVKVSMDGAPYLRKVDLGVYKGYPELVKGLEEM 120
Query: 121 FKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGSEVGGLS 177
FKF +G YSEREGY+GS++APTYEDKDGDWMLVGDVPW+MFISSCKRMRIMKGSEVGGLS
Sbjct: 121 FKFRMGTYSEREGYQGSDYAPTYEDKDGDWMLVGDVPWQMFISSCKRMRIMKGSEVGGLS 180
BLAST of Lag0016600 vs. ExPASy Swiss-Prot
Match:
P33077 (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)
HSP 1 Score: 235.7 bits (600), Expect = 3.9e-61
Identity = 116/181 (64.09%), Postives = 139/181 (76.80%), Query Frame = 0
Query: 11 LNLEATELRLGLPGD----GLVRTNKR------------NSQNDSAPPPKAQVVGWPPIR 70
+NL+ATELRLGLPG ++NKR + ++A PPKAQ+VGWPP+R
Sbjct: 11 VNLKATELRLGLPGTEETVSCGKSNKRVLPEATEKEIESTGKTETASPPKAQIVGWPPVR 70
Query: 71 SFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLSLYKGYPELLKGLEDMF 130
S+RKN +Q KK+E ++G G YVKVSMDGAPYLRKIDL++YK YPEL+K LE+MF
Sbjct: 71 SYRKNNVQTKKSE-------SEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMF 130
Query: 131 KFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKGSEVGGLSS 176
KF+VG+Y EREGYKGS+F PTYEDKDGDWMLVGDVPWEMF+SSCKR+RIMKGSEV GL
Sbjct: 131 KFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGLGC 184
BLAST of Lag0016600 vs. ExPASy Swiss-Prot
Match:
P32294 (Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1)
HSP 1 Score: 233.4 bits (594), Expect = 1.9e-60
Identity = 120/203 (59.11%), Postives = 141/203 (69.46%), Query Frame = 0
Query: 1 MDSTVSFSGDLNLEATELRLGLPG-----------DGLVRTNKR----NSQND------- 60
M+S V F DLNL+ATELRLGLPG ++R NKR SQ+
Sbjct: 1 MESRVVFESDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDSVSISKAS 60
Query: 61 ---------SAPPPKAQVVGWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGA 120
SAPPPKA++VGWPPIRS+RKN++Q +G GI+VKVSMDGA
Sbjct: 61 HHQQHVETVSAPPPKAKIVGWPPIRSYRKNSVQ-----------EGEGDGIFVKVSMDGA 120
Query: 121 PYLRKIDLSLYKGYPELLKGLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDV 173
PYLRK+DL +Y GYPELLK LE MFK +G+YSEREGYKGSE+APTYEDKDGDWMLVGDV
Sbjct: 121 PYLRKVDLKVYGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDV 180
BLAST of Lag0016600 vs. ExPASy Swiss-Prot
Match:
O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)
HSP 1 Score: 230.3 bits (586), Expect = 1.6e-59
Identity = 118/194 (60.82%), Postives = 138/194 (71.13%), Query Frame = 0
Query: 2 DSTVSFSGDLNLEATELRLGLPGD------GLVRTNKRNS-----------------QND 61
+S S+ +LNL+ATELRLGLPG R+NKR+S +++
Sbjct: 3 NSLGSYEKELNLKATELRLGLPGSDEPEKRATARSNKRSSPEASDEESISNGSDVTKEDN 62
Query: 62 SAPPPKAQVVGWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLS 121
PP KAQVVGWPPIRS+RKN +Q KK E ++G G+YVKVSM GAPYLRKIDL
Sbjct: 63 VVPPAKAQVVGWPPIRSYRKNNVQQKKEE------ESEGNGMYVKVSMAGAPYLRKIDLK 122
Query: 122 LYKGYPELLKGLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSC 173
+YK YPELLK LE+MFK G+YSEREGY GSE+APTYEDKDGDWMLVGDVPW MF+SSC
Sbjct: 123 VYKSYPELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSC 182
BLAST of Lag0016600 vs. ExPASy Swiss-Prot
Match:
Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 3.1e-58
Identity = 115/190 (60.53%), Postives = 135/190 (71.05%), Query Frame = 0
Query: 11 LNLEATELRLGLPGDGLV-----------RTNKR-------------NSQNDSAPPPKAQ 70
+NL+ TELRLGLPG V NKR + + +++PP KAQ
Sbjct: 5 VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQ 64
Query: 71 VVGWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDGAPYLRKIDLSLYKGYPEL 130
+VGWPP+RS+RKN +Q KK E+ +G GIYVKVSMDGAPYLRKIDLS YKGY EL
Sbjct: 65 IVGWPPVRSYRKNNIQSKKNES-----EHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSEL 124
Query: 131 LKGLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGDVPWEMFISSCKRMRIMKG 177
LK LE MFKF+VG+Y ER+GYKGS+F PTYEDKDGDWML+GDVPWEMFI +CKR+RIMKG
Sbjct: 125 LKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKG 184
BLAST of Lag0016600 vs. ExPASy Swiss-Prot
Match:
O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)
HSP 1 Score: 221.1 bits (562), Expect = 1.0e-56
Identity = 118/204 (57.84%), Postives = 135/204 (66.18%), Query Frame = 0
Query: 6 SFSGDLNLEATELRLGLPGD-----------GLVR-TNKRNS------------------ 65
S+ +LNL ATELRLGLPG +VR +NKR+S
Sbjct: 3 SYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSD 62
Query: 66 -------QNDSAPPPKAQVVGWPPIRSFRKNTLQVKKTEATAASPAADGGGIYVKVSMDG 125
DS P K QVVGWPPIRSFRKN+LQ KK E DG G+Y+KVSM G
Sbjct: 63 STTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVE------QGDGTGMYLKVSMAG 122
Query: 126 APYLRKIDLSLYKGYPELLKGLEDMFKFTVGQYSEREGYKGSEFAPTYEDKDGDWMLVGD 173
APYLRKIDL +YK YPELLK L+++FK T G+YSEREGY GSE+APTYEDKDGDWMLVGD
Sbjct: 123 APYLRKIDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGD 182
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038875234.1 | 3.6e-80 | 82.54 | auxin-induced protein 22B-like [Benincasa hispida] | [more] |
XP_004150434.1 | 1.1e-79 | 81.38 | auxin-induced protein 22B [Cucumis sativus] >KGN61645.1 hypothetical protein Csa... | [more] |
XP_008449289.1 | 1.4e-79 | 81.38 | PREDICTED: auxin-induced protein 22B [Cucumis melo] >KAA0057481.1 auxin-induced ... | [more] |
XP_022138413.1 | 1.2e-75 | 77.13 | auxin-responsive protein IAA4-like [Momordica charantia] | [more] |
XP_022975486.1 | 1.6e-75 | 79.78 | auxin-induced protein 22B-like [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
P33077 | 3.9e-61 | 64.09 | Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2 | [more] |
P32294 | 1.9e-60 | 59.11 | Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 S... | [more] |
O24542 | 1.6e-59 | 60.82 | Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S... | [more] |
Q38822 | 3.1e-58 | 60.53 | Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1 | [more] |
O24543 | 1.0e-56 | 57.84 | Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S... | [more] |