Lag0016583 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016583
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-directed RNA polymerase V subunit 7
Location	chr12: 39228013 .. 39228540 (+)
RNA-Seq Expression	Lag0016583
Synteny	Lag0016583

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTCAAAGTGCAGTTGCCATGGAATGTCATAATACCTGCTGAGAACTTAGATGCGAAGGGTTTGATGCTCCAAAGGTCGATTATAATTCGCCTATTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTTGCAGTTACGACTCTGGAAAACATCGGAGAAGGGAAAGTTCGACAGTCGGGTGATGTCTTGTTTCCAGTTACTTTCAGTGGTATTACCTTCAAGCTTTACAGGGGCGAGATCTTGGAGGGAGTTGTTCACAAGGTACTCAAGCATGGTGTTTTCTTAAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCTGGTGAAAATCCCGTCTTCTTGAACGACAAGCTCTCAAAAATCGAGAAAGACGTAGTAGTACGTTTCATTGTCATCGGAACAAAGTGGCTGGAGGCAGAGAGGGAATTTCAGGCACTGGTAAGTTTGGAAGGTGATTATCTGGGGCCTGTTTCTTAA

mRNA sequence

ATGTTTCTCAAAGTGCAGTTGCCATGGAATGTCATAATACCTGCTGAGAACTTAGATGCGAAGGGTTTGATGCTCCAAAGGTCGATTATAATTCGCCTATTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTTGCAGTTACGACTCTGGAAAACATCGGAGAAGGGAAAGTTCGACAGTCGGGTGATGTCTTGTTTCCAGTTACTTTCAGTGGTATTACCTTCAAGCTTTACAGGGGCGAGATCTTGGAGGGAGTTGTTCACAAGGTACTCAAGCATGGTGTTTTCTTAAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCTGGTGAAAATCCCGTCTTCTTGAACGACAAGCTCTCAAAAATCGAGAAAGACGTAGTAGTACGTTTCATTGTCATCGGAACAAAGTGGCTGGAGGCAGAGAGGGAATTTCAGGCACTGGTAAGTTTGGAAGGTGATTATCTGGGGCCTGTTTCTTAA

Coding sequence (CDS)

ATGTTTCTCAAAGTGCAGTTGCCATGGAATGTCATAATACCTGCTGAGAACTTAGATGCGAAGGGTTTGATGCTCCAAAGGTCGATTATAATTCGCCTATTAGATGAATTTGCCACAAAAAAGGCCACAAAGGATCTCGGTTATTTCCTTGCAGTTACGACTCTGGAAAACATCGGAGAAGGGAAAGTTCGACAGTCGGGTGATGTCTTGTTTCCAGTTACTTTCAGTGGTATTACCTTCAAGCTTTACAGGGGCGAGATCTTGGAGGGAGTTGTTCACAAGGTACTCAAGCATGGTGTTTTCTTAAGATGTGGCCCTGTTGAGAACATATATCTCTCTTATCTGAAAATGCCAGATTACCGCTATGTGCCTGGTGAAAATCCCGTCTTCTTGAACGACAAGCTCTCAAAAATCGAGAAAGACGTAGTAGTACGTTTCATTGTCATCGGAACAAAGTGGCTGGAGGCAGAGAGGGAATTTCAGGCACTGGTAAGTTTGGAAGGTGATTATCTGGGGCCTGTTTCTTAA

Protein sequence

MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGEGKVRQSGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS

Homology

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BLAST of Lag0016583 vs. NCBI nr
Match: XP_008465191.1 (PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis melo] >KAA0057517.1 DNA-directed RNA polymerase V subunit 7 [Cucumis melo var. makuwa] >TYK08198.1 DNA-directed RNA polymerase V subunit 7 [Cucumis melo var. makuwa])

HSP 1 Score: 353.2 bits (905), Expect = 1.3e-93
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 61  GKVRQSGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120
           GKVRQ+GDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]

BLAST of Lag0016583 vs. NCBI nr
Match: XP_004150402.1 (DNA-directed RNA polymerase V subunit 7 [Cucumis sativus] >XP_038875656.1 DNA-directed RNA polymerase V subunit 7 [Benincasa hispida] >XP_038875657.1 DNA-directed RNA polymerase V subunit 7 [Benincasa hispida] >KGN61629.1 hypothetical protein Csa_005986 [Cucumis sativus])

HSP 1 Score: 350.9 bits (899), Expect = 6.3e-93
Identity = 173/175 (98.86%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 61  GKVRQSGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120
           GKVRQ+GDVLFPV FSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]

BLAST of Lag0016583 vs. NCBI nr
Match: XP_022958784.1 (DNA-directed RNA polymerase V subunit 7 [Cucurbita moschata] >XP_022958785.1 DNA-directed RNA polymerase V subunit 7 [Cucurbita moschata] >XP_022958786.1 DNA-directed RNA polymerase V subunit 7 [Cucurbita moschata] >XP_022958787.1 DNA-directed RNA polymerase V subunit 7 [Cucurbita moschata] >KAG6574936.1 DNA-directed RNA polymerase V subunit 7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013504.1 DNA-directed RNA polymerase V subunit 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.4 bits (895), Expect = 1.8e-92
Identity = 171/175 (97.71%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 61  GKVRQSGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120
           GKVRQ+GDVLFPV FSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           RYVPGENP+F+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]

BLAST of Lag0016583 vs. NCBI nr
Match: XP_022138329.1 (DNA-directed RNA polymerase V subunit 7 [Momordica charantia])

HSP 1 Score: 349.4 bits (895), Expect = 1.8e-92
Identity = 171/175 (97.71%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIP+ENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPSENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 61  GKVRQSGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120
           GKVRQ+GDVLFPV FSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVVFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           RYVPGENPVF+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPVFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]

BLAST of Lag0016583 vs. NCBI nr
Match: XP_023006755.1 (DNA-directed RNA polymerase V subunit 7 [Cucurbita maxima] >XP_023006756.1 DNA-directed RNA polymerase V subunit 7 [Cucurbita maxima] >XP_023006757.1 DNA-directed RNA polymerase V subunit 7 [Cucurbita maxima] >XP_023548587.1 DNA-directed RNA polymerase V subunit 7 [Cucurbita pepo subsp. pepo] >XP_023548589.1 DNA-directed RNA polymerase V subunit 7 [Cucurbita pepo subsp. pepo] >XP_023548590.1 DNA-directed RNA polymerase V subunit 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 349.0 bits (894), Expect = 2.4e-92
Identity = 171/175 (97.71%), Postives = 174/175 (99.43%), Query Frame = 0


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE
Sbjct: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60

Query: 61  GKVRQSGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120
           GKVRQ+GDVLFPV FSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY
Sbjct: 61  GKVRQTGDVLFPVIFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDY 120

Query: 121 RYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           RYVPGENP+F+NDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS
Sbjct: 121 RYVPGENPLFMNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 175

[Close]

BLAST of Lag0016583 vs. ExPASy Swiss-Prot
Match: A6QRA1 (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7 PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.3e-76
Identity = 126/176 (71.59%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MFLKVQLPWNV+IPAEN+DAKGLML+R+I++ LL+ FA+KKATK+LGY++AVTTL+ IGE
Sbjct: 1   MFLKVQLPWNVMIPAENMDAKGLMLKRAILVELLEAFASKKATKELGYYVAVTTLDKIGE 60

Query: 61  GKVRQ-SGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GK+R+ +G+VLFPV FSG+TFK+++GEI+ GVVHKVLKHGVF+RCGP+EN+YLSY KMPD
Sbjct: 61  GKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCGPIENVYLSYTKMPD 120

Query: 121 YRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
           Y+Y+PGENP+F+N+K S+I+ +  VR +VIG KW+E EREFQAL SLEGDYLGP+S
Sbjct: 121 YKYIPGENPIFMNEKTSRIQVETTVRVVVIGIKWMEVEREFQALASLEGDYLGPLS 176

[Close]

BLAST of Lag0016583 vs. ExPASy Swiss-Prot
Match: Q8LE42 (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD7 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 6.9e-58
Identity = 104/174 (59.77%), Postives = 141/174 (81.03%), Query Frame = 0


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MF+KV+LPW+V IPAE++D  GLMLQR+I+IRLL+ F+ +KATKDLGY +  T LENIGE
Sbjct: 1   MFIKVKLPWDVTIPAEDMDT-GLMLQRAIVIRLLEAFSKEKATKDLGYLITPTILENIGE 60

Query: 61  GKVR-QSGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPD 120
           GK++ Q+G++ FPV F+GI FK+++GEI+ GVVHKV K GVFL+ GP E IYLS++KMP 
Sbjct: 61  GKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSGPYEIIYLSHMKMPG 120

Query: 121 YRYVPGENPVFLNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGP 174
           Y ++PGENP F+N  +S+I+    VRF+V+ T+W EAE++F AL S++GD LGP
Sbjct: 121 YEFIPGENPFFMNQYMSRIQIGARVRFVVLDTEWREAEKDFMALASIDGDNLGP 173

[Close]

BLAST of Lag0016583 vs. ExPASy Swiss-Prot
Match: Q6NML5 (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB7L PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-24
Identity = 74/193 (38.34%), Postives = 109/193 (56.48%), Query Frame = 0


Query: 1   MFLKVQLPWNVIIPAENLDAKGLMLQRSIIIRLLDEFATKKATKDLGYFLAVTTLENIGE 60
           MF +V++  +V I A++L+  G    + I+ RLL +   +KA ++ G++L +T L++IG 
Sbjct: 1   MFSEVEMARDVAICAKHLN--GQSPHQPILCRLLQDLIHEKACREHGFYLGITALKSIGN 60

Query: 61  GK--------VRQSGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYL 120
            K          Q+  + FPV+F+  TF   RG+IL+G V KVL +G F+R GP+   YL
Sbjct: 61  NKNNNIDNENNHQAKILTFPVSFTCRTFLPARGDILQGTVKKVLWNGAFIRSGPLRYAYL 120

Query: 121 SYLKMPDYRYV-----PGENPVFLNDKLSKIEKDVVVRFIVIGTKWLE----AEREFQAL 176
           S LKMP Y YV       E P F  D LSKI   VVVRF V+  ++ E       ++  L
Sbjct: 121 SLLKMPHYHYVHSPLSEDEKPHFQKDDLSKIAVGVVVRFQVLAVRFKERPHKRRNDYYVL 180

[Close]

BLAST of Lag0016583 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-15
Identity = 49/131 (37.40%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 47  GYFLAVTTLENIGEGKVRQ-SGDVLFPVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCG 106
           G+ +AVT +ENIG+G +R  +G V FPV +  + F+ ++GEILE VV  V K G F   G
Sbjct: 43  GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102

Query: 107 PVENIYLSYLKMPDYRYVPGENPVF-LNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALV 166
           PV+    ++L   D  +  G+ P +  +D   KI+KD  VR  +IGT+ ++A   F  + 
Sbjct: 103 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIG 162

Query: 167 SLEGDYLGPVS 176
           +++ D+LG ++
Sbjct: 163 TIKDDFLGVIN 171

[Close]

BLAST of Lag0016583 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-13
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 0


Query: 21  KGLMLQRSIIIRLLDEFATKKATKDL--------GYFLAVTTLENIGEGKVRQ-SGDVLF 80
           + + L      R L E    K  KD+        G+ +A+T ++ IG+G +R  +G V F
Sbjct: 9   RNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIRDGTGFVTF 68

Query: 81  PVTFSGITFKLYRGEILEGVVHKVLKHGVFLRCGPVENIYLSYLKMPDYRYVPGENPVF- 140
           PV +  + F+ ++GEILE VV  V K G F   GPV+     +L   D  +  G+ P + 
Sbjct: 69  PVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQAGDMPNYT 128

Query: 141 LNDKLSKIEKDVVVRFIVIGTKWLEAEREFQALVSLEGDYLGPVS 176
            +D   KI+K+  VR  +IGT+ ++A   F  + +++ D+LG ++
Sbjct: 129 TSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171

The following BLAST results are available for this feature:

BLAST of Lag0016583 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465191.1	1.3e-93	99.43	PREDICTED: DNA-directed RNA polymerase V subunit 7 [Cucumis melo] >KAA0057517.1 ...	[more]
XP_004150402.1	6.3e-93	98.86	DNA-directed RNA polymerase V subunit 7 [Cucumis sativus] >XP_038875656.1 DNA-di...	[more]
XP_022958784.1	1.8e-92	97.71	DNA-directed RNA polymerase V subunit 7 [Cucurbita moschata] >XP_022958785.1 DNA...	[more]
XP_022138329.1	1.8e-92	97.71	DNA-directed RNA polymerase V subunit 7 [Momordica charantia]	[more]
XP_023006755.1	2.4e-92	97.71	DNA-directed RNA polymerase V subunit 7 [Cucurbita maxima] >XP_023006756.1 DNA-d...	[more]

BLAST of Lag0016583 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A6QRA1	3.3e-76	71.59	DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPE7...	[more]
Q8LE42	6.9e-58	59.77	DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPD...	[more]
Q6NML5	1.3e-24	38.34	DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana OX=37...	[more]
P46279	2.5e-15	37.40	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	1.4e-13	31.52	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 1..83 e-value: 1.4E-15 score: 59.3
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..80
None	No IPR available	GENE3D	2.40.50.140		coord: 84..174 e-value: 4.1E-24 score: 86.2
None	No IPR available	PANTHER	PTHR12709:SF3	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 7	coord: 1..175
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..175
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 84..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016583.1	Lag0016583.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0003735	structural constituent of ribosome