Lag0016572 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016572
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	C2H2-type domain-containing protein
Location	chr12: 39116481 .. 39116975 (-)
RNA-Seq Expression	Lag0016572
Synteny	Lag0016572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCAATAGCTTGAGGATGAGCCCACAAGAAGAGCTTAGAATTATAAGCAACTCCAAGATGAAGCCACAACCCAAAGCTAAAGCCTCATTCAAACATAACAACACAAGAGGAGATCAAGAACAAGAAGAAAACATTGGATTTCTATGGCTTTCTTCAGGAGCTTACACATGTAGCTTTTGCAAAAGGCAATTTCGATCGGCACAAGCCCTCGGCGGTCACATGAATGTTCATCGACGAGACCGCGCAAAGCTCAGACGAAGATCTCCTCCATTGGATTCAACTCATCATGGTCATGATTTTCATGGATCTTCATCTCAACCCATTAAGTTTCTCAAACTGTATGACTTCTCAAGCTTTAATAATGGTGGTGAAGAAGAATCAGATGGTGGGTGTAAGATTTGGAAGAAGGTTAAGAAGTTTGTGAACAAGGAGACTGGTTTGCTCAGTGGTTCAAATGAGATAGATTTGGAACTTAGATTAGGGTTTTAG

mRNA sequence

ATGGAGAGCAATAGCTTGAGGATGAGCCCACAAGAAGAGCTTAGAATTATAAGCAACTCCAAGATGAAGCCACAACCCAAAGCTAAAGCCTCATTCAAACATAACAACACAAGAGGAGATCAAGAACAAGAAGAAAACATTGGATTTCTATGGCTTTCTTCAGGAGCTTACACATGTAGCTTTTGCAAAAGGCAATTTCGATCGGCACAAGCCCTCGGCGGTCACATGAATGTTCATCGACGAGACCGCGCAAAGCTCAGACGAAGATCTCCTCCATTGGATTCAACTCATCATGGTCATGATTTTCATGGATCTTCATCTCAACCCATTAAGTTTCTCAAACTGTATGACTTCTCAAGCTTTAATAATGGTGGTGAAGAAGAATCAGATGGTGGGTGTAAGATTTGGAAGAAGGTTAAGAAGTTTGTGAACAAGGAGACTGGTTTGCTCAGTGGTTCAAATGAGATAGATTTGGAACTTAGATTAGGGTTTTAG

Coding sequence (CDS)

ATGGAGAGCAATAGCTTGAGGATGAGCCCACAAGAAGAGCTTAGAATTATAAGCAACTCCAAGATGAAGCCACAACCCAAAGCTAAAGCCTCATTCAAACATAACAACACAAGAGGAGATCAAGAACAAGAAGAAAACATTGGATTTCTATGGCTTTCTTCAGGAGCTTACACATGTAGCTTTTGCAAAAGGCAATTTCGATCGGCACAAGCCCTCGGCGGTCACATGAATGTTCATCGACGAGACCGCGCAAAGCTCAGACGAAGATCTCCTCCATTGGATTCAACTCATCATGGTCATGATTTTCATGGATCTTCATCTCAACCCATTAAGTTTCTCAAACTGTATGACTTCTCAAGCTTTAATAATGGTGGTGAAGAAGAATCAGATGGTGGGTGTAAGATTTGGAAGAAGGTTAAGAAGTTTGTGAACAAGGAGACTGGTTTGCTCAGTGGTTCAAATGAGATAGATTTGGAACTTAGATTAGGGTTTTAG

Protein sequence

MESNSLRMSPQEELRIISNSKMKPQPKAKASFKHNNTRGDQEQEENIGFLWLSSGAYTCSFCKRQFRSAQALGGHMNVHRRDRAKLRRRSPPLDSTHHGHDFHGSSSQPIKFLKLYDFSSFNNGGEEESDGGCKIWKKVKKFVNKETGLLSGSNEIDLELRLGF

Homology

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BLAST of Lag0016572 vs. NCBI nr
Match: XP_038875029.1 (transcriptional regulator TAC1-like [Benincasa hispida])

HSP 1 Score: 223.8 bits (569), Expect = 1.1e-54
Identity = 122/161 (75.78%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 9   SPQEELRIISNSKMKPQPKAKASFKHNNTR-GDQEQEEN---IGFLWLSSGAYTCSFCKR 68
           SPQEELRII+ SKMKPQP AKAS K+N+TR  +QE+EE    +GF W SS AYTC FCKR
Sbjct: 3   SPQEELRIITKSKMKPQP-AKASSKYNDTRERNQEEEEKEIVVGFPWASSRAYTCGFCKR 62

Query: 69  QFRSAQALGGHMNVHRRDRAKLRRRSPPLDS-THHGHDFHGSSSQPIKFLKLYDFSSFNN 128
           +F+SAQALGGHMNVHRRDRAKL RR+P LDS TH  HDFHGSSSQPIKFLKLYDFSSF +
Sbjct: 63  KFQSAQALGGHMNVHRRDRAKL-RRTPSLDSTTHDHHDFHGSSSQPIKFLKLYDFSSF-H 122

Query: 129 GGEEESDGGCKIWKKVKKFVNKETGLLSGSNEIDLELRLGF 165
           G E+ESDGGCKIWKKV KFV  E  LLS SN+IDLEL+LGF
Sbjct: 123 GEEDESDGGCKIWKKVNKFVKNEAALLSTSNDIDLELKLGF 160

[Close]

BLAST of Lag0016572 vs. NCBI nr
Match: XP_011650145.1 (zinc finger protein 3 [Cucumis sativus] >KGN61621.1 hypothetical protein Csa_006689 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50
Identity = 123/181 (67.96%), Postives = 138/181 (76.24%), Query Frame = 0


Query: 1   MESNS---LRMSPQ----EELRIISNSKMKPQPKAKASFKHNNTR-GDQEQEEN----IG 60
           MESN+   + MS      +ELRII+  KMKPQ KAKAS KHNN R G+QE+EE     + 
Sbjct: 1   MESNNCLGITMSSSSQGVQELRIITKPKMKPQLKAKASRKHNNKREGNQEEEEEKEIIVE 60

Query: 61  FLWLSSGA-YTCSFCKRQFRSAQALGGHMNVHRRDRAKLRRRSPPLDST---HHGHDFHG 120
           F W SS A YTC FCKRQF+SAQALGGHMNVHRRDRAKL RRS PLDS     H HDFHG
Sbjct: 61  FPWASSRASYTCGFCKRQFQSAQALGGHMNVHRRDRAKL-RRSLPLDSATNDDHHHDFHG 120

Query: 121 SSSQPIKFLKLYDFSSFN-NGGEEESDGGCKIWKKVKKFVNKETGLLSGSNEIDLELRLG 165
           SSSQPIKFLKLYDFSSF+    +++SDGGC+IWKKV KFV KET LL+ SN+IDLELRLG
Sbjct: 121 SSSQPIKFLKLYDFSSFHGEQADDQSDGGCQIWKKVNKFVKKETALLATSNDIDLELRLG 180

[Close]

BLAST of Lag0016572 vs. NCBI nr
Match: XP_008465205.1 (PREDICTED: transcriptional regulator SUPERMAN [Cucumis melo] >KAA0057527.1 transcriptional regulator SUPERMAN [Cucumis melo var. makuwa] >TYK08208.1 transcriptional regulator SUPERMAN [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 4.0e-49
Identity = 116/164 (70.73%), Postives = 128/164 (78.05%), Query Frame = 0


Query: 12  EELRIISNSKMKPQPKAKASFKHNNTR-GDQEQEEN-----IGFLWLSSGAYTCSFCKRQ 71
           +ELRII+  KMKPQ KAKAS KH+N R G QE+EE      + F W SS AYTC FCKRQ
Sbjct: 19  QELRIITKPKMKPQLKAKASSKHSNKREGKQEEEEKEKEIIVEFPWASSRAYTCGFCKRQ 78

Query: 72  FRSAQALGGHMNVHRRDRAKLRRRSPPLDST---HHGHDFHGSSSQPIKFLKLYDFSSFN 131
           F+SAQALGGHMNVHRRDRAKL RRS PLDS     H HDF GSSSQPIKFLKLYDFSSF+
Sbjct: 79  FQSAQALGGHMNVHRRDRAKL-RRSLPLDSATNDDHHHDFLGSSSQPIKFLKLYDFSSFH 138

Query: 132 -NGGEEESDGGCKIWKKVKKFV-NKETGLLSGSNEIDLELRLGF 165
               +++SDGGCKIWKKV KFV  KET LL+ SN+IDLELRLGF
Sbjct: 139 GEQADDQSDGGCKIWKKVNKFVKKKETALLATSNDIDLELRLGF 181

[Close]

BLAST of Lag0016572 vs. NCBI nr
Match: XP_023514445.1 (zinc finger protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 3.2e-46
Identity = 114/169 (67.46%), Postives = 122/169 (72.19%), Query Frame = 0


Query: 1   MESNSLRM-SPQEELRIISNSKMKPQPKAKASFKHNNTRGDQEQEEN----IGFLWLSSG 60
           MES SL+M SPQE+LRI +              K NNTRGD ++EE     +GF W SS 
Sbjct: 1   MESKSLKMNSPQEQLRITN--------------KPNNTRGDHQEEEEEEDIVGFAWGSSR 60

Query: 61  AYTCSFCKRQFRSAQALGGHMNVHRRDRAKLRRRSPPLDSTHHGHDFHGSSSQPIKFLKL 120
           AY+C FCKRQFRSAQALGGHMNVHRRDRAKL RRSPPL S H    FHGSSSQPIKFLKL
Sbjct: 61  AYSCGFCKRQFRSAQALGGHMNVHRRDRAKL-RRSPPLGSPH----FHGSSSQPIKFLKL 120

Query: 121 YDFSSFNNGGEEESDGGCKIWKKVKKFVNKETGLLSGSNEIDLELRLGF 165
           YDFSS    GEEE+DG CKIWK VKKFV KE   L  SNEIDLELRLGF
Sbjct: 121 YDFSSLR--GEEEADGECKIWKNVKKFV-KEIDFLGSSNEIDLELRLGF 147

[Close]

BLAST of Lag0016572 vs. NCBI nr
Match: KAG6593853.1 (Transcriptional regulator SUPERMAN, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026185.1 Transcriptional regulator SUPERMAN, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.3 bits (495), Expect = 4.2e-46
Identity = 113/171 (66.08%), Postives = 124/171 (72.51%), Query Frame = 0


Query: 1   MESNSLRM-SPQEELRIISNSKMKPQPKAKASFKHNNTRGDQEQEEN------IGFLWLS 60
           MES SL+M SPQE+LR+ +              K NNTRGD ++EE       +GF W S
Sbjct: 1   MESKSLKMNSPQEQLRMTN--------------KPNNTRGDHQEEEEEEEEDIVGFAWGS 60

Query: 61  SGAYTCSFCKRQFRSAQALGGHMNVHRRDRAKLRRRSPPLDSTHHGHDFHGSSSQPIKFL 120
           S AY+C FCKR+FRSAQALGGHMNVHRRDRAKL RRSPPLDS H    FHGSSSQPIKFL
Sbjct: 61  SRAYSCGFCKRKFRSAQALGGHMNVHRRDRAKL-RRSPPLDSPH----FHGSSSQPIKFL 120

Query: 121 KLYDFSSFNNGGEEESDGGCKIWKKVKKFVNKETGLLSGSNEIDLELRLGF 165
           KLYDFSS +  GEEE+DG CKIWK VKKFV KE   L  SNEIDLELRLGF
Sbjct: 121 KLYDFSSLS--GEEEADGECKIWKNVKKFV-KEIDFLGSSNEIDLELRLGF 149

[Close]

BLAST of Lag0016572 vs. ExPASy Swiss-Prot
Match: Q38895 (Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 41 QEQEENIGFLWLSSGAYTCSFCKRQFRSAQALGGHMNVHRRDRAKLRRRSPPLDST 97
          Q+ +  +GF W    +YTCSFCKR+FRSAQALGGHMNVHRRDRA+LR +  P  S+
Sbjct: 32 QDHDYLLGFSW-PPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQSPSSSS 86

[Close]

BLAST of Lag0016572 vs. ExPASy Swiss-Prot
Match: Q9SLB8 (Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-11
Identity = 32/42 (76.19%), Postives = 35/42 (83.33%), Query Frame = 0


Query: 57 YTCSFCKRQFRSAQALGGHMNVHRRDRAKLRRRSPPLDSTHH 99
          YTCSFC+R+FRSAQALGGHMNVHRRDRAKLR+    L   HH
Sbjct: 49 YTCSFCRREFRSAQALGGHMNVHRRDRAKLRQIPSWLFEPHH 90

[Close]

BLAST of Lag0016572 vs. ExPASy Swiss-Prot
Match: O80942 (Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-10
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 43 QEENIGFLWLSSGAYTCSFCKRQFRSAQALGGHMNVHRRDRAKLRR 89
          +++  G LW    +YTCSFC+R+F+SAQALGGHMNVHRRDRA+L++
Sbjct: 26 EDDAAGSLW-PPRSYTCSFCRREFKSAQALGGHMNVHRRDRARLKQ 70

[Close]

BLAST of Lag0016572 vs. ExPASy Swiss-Prot
Match: Q9LHS9 (Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 GN=RBE PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-09
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 48 GFLWLSSGAYTCSFCKRQFRSAQALGGHMNVHRRDRAKLRRRSPPLDST 97
          G +W    +Y+CSFC R+F+SAQALGGHMNVHRRDRA+L+++S    ST
Sbjct: 47 GCMW-PPRSYSCSFCGREFKSAQALGGHMNVHRRDRARLKQQSLSPSST 94

[Close]

BLAST of Lag0016572 vs. ExPASy Swiss-Prot
Match: Q9SR34 (Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08
Identity = 26/36 (72.22%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 54 SGAYTCSFCKRQFRSAQALGGHMNVHRRDRAKLRRR 90
          S +Y CSFC R F +AQALGGHMN+HRRDRAKLR++
Sbjct: 32 SRSYVCSFCIRGFSNAQALGGHMNIHRRDRAKLRQK 67

The following BLAST results are available for this feature:

BLAST of Lag0016572 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875029.1	1.1e-54	75.78	transcriptional regulator TAC1-like [Benincasa hispida]	[more]
XP_011650145.1	2.1e-50	67.96	zinc finger protein 3 [Cucumis sativus] >KGN61621.1 hypothetical protein Csa_006...	[more]
XP_008465205.1	4.0e-49	70.73	PREDICTED: transcriptional regulator SUPERMAN [Cucumis melo] >KAA0057527.1 trans...	[more]
XP_023514445.1	3.2e-46	67.46	zinc finger protein 4-like [Cucurbita pepo subsp. pepo]	[more]
KAG6593853.1	4.2e-46	66.08	Transcriptional regulator SUPERMAN, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of Lag0016572 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38895	1.4e-12	62.50	Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana OX=3702 GN=SUP PE=1 S...	[more]
Q9SLB8	4.5e-11	76.19	Zinc finger protein 11 OS=Arabidopsis thaliana OX=3702 GN=ZFP11 PE=2 SV=1	[more]
O80942	3.8e-10	63.04	Zinc finger protein 10 OS=Arabidopsis thaliana OX=3702 GN=ZFP10 PE=2 SV=1	[more]
Q9LHS9	1.9e-09	61.22	Probable transcriptional regulator RABBIT EARS OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SR34	4.7e-08	72.22	Transcriptional regulator TAC1 OS=Arabidopsis thaliana OX=3702 GN=TAC1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 57..79 e-value: 0.0032 score: 26.7
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 59..79
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 57..84 score: 11.260599
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 52..107 e-value: 2.3E-6 score: 29.3
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 56..81 e-value: 1.3E-7 score: 31.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..101
None	No IPR available	PANTHER	PTHR45801:SF64	TRANSCRIPTIONAL REGULATOR SUPERMAN	coord: 24..97
None	No IPR available	PANTHER	PTHR45801	OS07G0101800 PROTEIN	coord: 24..97
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 55..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016572.1	Lag0016572.1	mRNA