Lag0016562 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016562
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CASP-like protein
Location	chr12: 39027586 .. 39029074 (-)
RNA-Seq Expression	Lag0016562
Synteny	Lag0016562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTTGATTTGGAGCAGAGGGGAAATATGTTGGATTTTCCTGGGACTCCAGGGACATTGACTGGGTTTGTGTTGAGGATTTTGCAATGTGTTTTTGCTGCTGGGTCTGTTGCTTCCATGGCTACTGCTGTTGGCTTCTATAACTTCACAGCTTTTTGGTATTTATTGATTCTCACCCTTCTCTTTTTTTGGCATGATTGGTTTTGATTGTGATTGAAATCGAATATTCTTCAAGGGTTTTTATTCTTCTTTTCAATGGAGAATAAGGATTTTAAGACTTGAGAATCTTGATAGAATTAGAAATTTTTGGTAATGCTGCTGCTCAAACTTATCCTATGTGTGATCCTTGCCTTTTTGCAGTGGTCTGGCTTCTCATTGCTGCCTTGCAAGTTTGAAAATAGTTATAATTTGGACAGGGCACTCAATTTGAGCTTTGATTTTATTGAACTCTTGGAATTATTGTACTGGGAATTTGGGATGTGGGGGTTATTGGTGTTTTTTCTAATCTAGATCTTTCCATTAGTTGTTTTTGTAGAGCTCTCAAACAGAATCTTGCATCCTTGAGCTTAGCATTTAGTGTATCTATTCTTCTTTATTCATTTGATATAAGAAGATTTTGTTCCATGTTCAGTTTAGTTTCTCTTTACAAAACACTTCTCATGTTTTATATTACTTATAAACATTCCTAGAGAAAACAGTGAAGCTAATTACAGAAGAAACTGACTGTGTTTTAGCTTCCTAGACTGTCATATCTTAGAATCATTAGATACCTTCCGCTACCATACGACCGTGCTTGTTGTGCGCGTTCGAGATGAATAGTACTTTTACTCGTCATATAACTCTGTGCCTTTTCTGTGTTTTTCTCTCAAGCACTGCTCTTGCTTGCTTGAGGGGATTTTGTGATCACTCATTGTATATGATAAAATCTGTTTATGCAGTAAAGTTATCAAACCTGTGATAATATTAGACACAAAATTAAGCGTATCGAAGCCGTTTTCTTCTGTCGTATCTCCTTCTCCCTCAAATGAACTCCTAGTTTGTGATTTACTTATGATTTGCAGCTATGTGATCGCGTCGATGGGTCTGCAAGTTACCTGGAGTTTTATGCTGGCATTGTTAGATGCATATGCATTGGTAAGAAAGAAGATGCTTCACAATCCTATTCTGGTCAGCCTCTTTGTAGTTGGGGATTGGGTGAGCACTTAGCACCTATCAAATTCTGAGTTGCTTAAGATTGTGTCTTGTGATTACTAGTAGAAGTTCAACCATTTCTCCAATTATTGGTTTGCAGGTGACAGCAACATTGTCTCTCGCTGCAGCTTCCGCCTCCGGTGGGGTATCCGTATTGTTCTTCAGTGACTTGGGACACTGCAGTTTCGGGGACGAATGCCGAAAGTTCCAAATCTCTGTTGTTTTAGCCTTCCTAAGCTGGATAACCATAGCCATTTCAGCTCTGATTATGCTCTGGATATTGGCTGCAGGTTGA

mRNA sequence

ATGTGTTTTGATTTGGAGCAGAGGGGAAATATGTTGGATTTTCCTGGGACTCCAGGGACATTGACTGGGTTTGTGTTGAGGATTTTGCAATGTGTTTTTGCTGCTGGGTCTGTTGCTTCCATGGCTACTGCTGTTGGCTTCTATAACTTCACAGCTTTTTGCTATGTGATCGCGTCGATGGGTCTGCAAGTTACCTGGAGTTTTATGCTGGCATTGTTAGATGCATATGCATTGGTAAGAAAGAAGATGCTTCACAATCCTATTCTGGTCAGCCTCTTTGTAGTTGGGGATTGGGTGACAGCAACATTGTCTCTCGCTGCAGCTTCCGCCTCCGGTGGGGTATCCGTATTGTTCTTCAGTGACTTGGGACACTGCAGTTTCGGGGACGAATGCCGAAAGTTCCAAATCTCTGTTGTTTTAGCCTTCCTAAGCTGGATAACCATAGCCATTTCAGCTCTGATTATGCTCTGGATATTGGCTGCAGGTTGA

Coding sequence (CDS)

ATGTGTTTTGATTTGGAGCAGAGGGGAAATATGTTGGATTTTCCTGGGACTCCAGGGACATTGACTGGGTTTGTGTTGAGGATTTTGCAATGTGTTTTTGCTGCTGGGTCTGTTGCTTCCATGGCTACTGCTGTTGGCTTCTATAACTTCACAGCTTTTTGCTATGTGATCGCGTCGATGGGTCTGCAAGTTACCTGGAGTTTTATGCTGGCATTGTTAGATGCATATGCATTGGTAAGAAAGAAGATGCTTCACAATCCTATTCTGGTCAGCCTCTTTGTAGTTGGGGATTGGGTGACAGCAACATTGTCTCTCGCTGCAGCTTCCGCCTCCGGTGGGGTATCCGTATTGTTCTTCAGTGACTTGGGACACTGCAGTTTCGGGGACGAATGCCGAAAGTTCCAAATCTCTGTTGTTTTAGCCTTCCTAAGCTGGATAACCATAGCCATTTCAGCTCTGATTATGCTCTGGATATTGGCTGCAGGTTGA

Protein sequence

MCFDLEQRGNMLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFMLALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFGDECRKFQISVVLAFLSWITIAISALIMLWILAAG

Homology

[Close]

BLAST of Lag0016562 vs. NCBI nr
Match: KAG6593844.1 (1-aminocyclopropane-1-carboxylate oxidase-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.7 bits (735), Expect = 6.1e-74
Identity = 150/154 (97.40%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 9   GNMLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSF 68
           GNMLDFPGTPGTLT FVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSF
Sbjct: 318 GNMLDFPGTPGTLTAFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSF 377

Query: 69  MLALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFG 128
           MLALLDAYAL+RKKMLHNPILVSLFVVGDWVTATLSLAAASASGGV+VLFFS+LGHCSFG
Sbjct: 378 MLALLDAYALLRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVAVLFFSNLGHCSFG 437

Query: 129 DECRKFQISVVLAFLSWITIAISALIMLWILAAG 163
           DECRKFQISVVLAFLSWITIAISALIMLWILAAG
Sbjct: 438 DECRKFQISVVLAFLSWITIAISALIMLWILAAG 471

[Close]

BLAST of Lag0016562 vs. NCBI nr
Match: TYK08224.1 (CASP-like protein 5B3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 285.0 bits (728), Expect = 4.0e-73
Identity = 148/158 (93.67%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 4   DLEQRGNMLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQ 63
           D E  GNML FPGTPGTLTGFVLRILQCVFAAGS+ASMAT+VGFYNFTAFCYVIASMGLQ
Sbjct: 54  DKEMGGNMLAFPGTPGTLTGFVLRILQCVFAAGSIASMATSVGFYNFTAFCYVIASMGLQ 113

Query: 64  VTWSFMLALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLG 123
           VTWS MLALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGV+VLFFSDLG
Sbjct: 114 VTWSLMLALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVAVLFFSDLG 173

Query: 124 HCSFGDECRKFQISVVLAFLSWITIAISALIMLWILAA 162
           HCSFG+ECRKFQISVVLAFLSWIT+AISALIMLWILAA
Sbjct: 174 HCSFGNECRKFQISVVLAFLSWITVAISALIMLWILAA 211

[Close]

BLAST of Lag0016562 vs. NCBI nr
Match: KAA0065678.1 (CASP-like protein 5B3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 147/154 (95.45%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 8   RGNMLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWS 67
           RGNML FPGTPGTLTGFVLRILQCVFAAGS+ASMAT+VGFYNFTAFCYVIASMGLQVTWS
Sbjct: 4   RGNMLAFPGTPGTLTGFVLRILQCVFAAGSIASMATSVGFYNFTAFCYVIASMGLQVTWS 63

Query: 68  FMLALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSF 127
            MLALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGV+VLFFSDLGHCSF
Sbjct: 64  LMLALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVAVLFFSDLGHCSF 123

Query: 128 GDECRKFQISVVLAFLSWITIAISALIMLWILAA 162
           G+ECRKFQISVVLAFLSWIT+AISALIMLWILAA
Sbjct: 124 GNECRKFQISVVLAFLSWITVAISALIMLWILAA 157

[Close]

BLAST of Lag0016562 vs. NCBI nr
Match: XP_022930413.1 (CASP-like protein 5B3 [Cucurbita moschata] >XP_023000558.1 CASP-like protein 5B3 [Cucurbita maxima] >XP_023514001.1 CASP-like protein 5B3 [Cucurbita pepo subsp. pepo] >KAG7026176.1 CASP-like protein 5B3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 11  MLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML 70
           MLDFPGTPGTLT FVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML
Sbjct: 1   MLDFPGTPGTLTAFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML 60

Query: 71  ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFGDE 130
           ALLDAYAL+RKKMLHNPILVSLFVVGDWVTATLSLAAASASGGV+VLFFS+LGHCSFGDE
Sbjct: 61  ALLDAYALLRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVAVLFFSNLGHCSFGDE 120

Query: 131 CRKFQISVVLAFLSWITIAISALIMLWILAAG 163
           CRKFQISVVLAFLSWITIAISALIMLWILAAG
Sbjct: 121 CRKFQISVVLAFLSWITIAISALIMLWILAAG 152

[Close]

BLAST of Lag0016562 vs. NCBI nr
Match: XP_038875242.1 (CASP-like protein 5B3 isoform X1 [Benincasa hispida])

HSP 1 Score: 280.8 bits (717), Expect = 7.5e-72
Identity = 145/151 (96.03%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 11  MLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML 70
           MLDFPGTPGTLTGFVLRILQCVFAAGS+ASMAT+VGFYNFTAFCYVIASMGLQVTWSFML
Sbjct: 1   MLDFPGTPGTLTGFVLRILQCVFAAGSIASMATSVGFYNFTAFCYVIASMGLQVTWSFML 60

Query: 71  ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFGDE 130
           ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGV+VLFFSDLGHC+FGDE
Sbjct: 61  ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVAVLFFSDLGHCNFGDE 120

Query: 131 CRKFQISVVLAFLSWITIAISALIMLWILAA 162
           CRKFQISVVLAFLSWITIA+SALIMLWIL A
Sbjct: 121 CRKFQISVVLAFLSWITIAVSALIMLWILVA 151

[Close]

BLAST of Lag0016562 vs. ExPASy Swiss-Prot
Match: Q8L7R5 (CASP-like protein 5B3 OS=Arabidopsis thaliana OX=3702 GN=At3g23200 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-53
Identity = 106/151 (70.20%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 11  MLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML 70
           M+D PGTPGTLTG VLRI QCVFAAGS++ M T+ GF++FTAFCY+IA+MGLQV WSF L
Sbjct: 1   MIDIPGTPGTLTGLVLRISQCVFAAGSISYMVTSGGFFSFTAFCYLIAAMGLQVIWSFGL 60

Query: 71  ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFGDE 130
           A+LD +ALVRKK L +P+LVSLFVVGDWVT+TLSLA AS+S G++VL+F DLG CSF  E
Sbjct: 61  AILDTFALVRKKTLLSPVLVSLFVVGDWVTSTLSLAGASSSAGITVLYFGDLGSCSFEAE 120

Query: 131 CRKFQISVVLAFLSWITIAISALIMLWILAA 162
           C K+Q+SV LAFL WITIA+S+L  LW+LA+
Sbjct: 121 CWKYQLSVALAFLCWITIAVSSLTTLWLLAS 151

[Close]

BLAST of Lag0016562 vs. ExPASy Swiss-Prot
Match: B8BD96 (CASP-like protein 5B3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30532 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.1e-41
Identity = 90/153 (58.82%), Postives = 115/153 (75.16%), Query Frame = 0


Query: 11  MLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML 70
           M D  G+PGT +G  LR+ QCVFA  SV +MA+A GF N+TAFCY+IASMGLQ+ WSF L
Sbjct: 1   MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60

Query: 71  ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFGDE 130
           A LD Y+L  K+ LHNP+LVSLFVVGDWVTA LS AAASAS GV++LF  D+  C    +
Sbjct: 61  ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFAAASASAGVTILFERDVHFCRMYPQ 120

Query: 131 --CRKFQISVVLAFLSWITIAISALIMLWILAA 162
             C ++++SV+LAF++W  IA SA+ M W+LA+
Sbjct: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLAS 153

[Close]

BLAST of Lag0016562 vs. ExPASy Swiss-Prot
Match: Q6K478 (CASP-like protein 5B3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0249400 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.1e-41
Identity = 90/153 (58.82%), Postives = 115/153 (75.16%), Query Frame = 0


Query: 11  MLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML 70
           M D  G+PGT +G  LR+ QCVFA  SV +MA+A GF N+TAFCY+IASMGLQ+ WSF L
Sbjct: 1   MKDVVGSPGTWSGMSLRVSQCVFAGASVVAMASAYGFSNYTAFCYLIASMGLQLLWSFGL 60

Query: 71  ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFGDE 130
           A LD Y+L  K+ LHNP+LVSLFVVGDWVTA LS AAASAS GV++LF  D+  C    +
Sbjct: 61  ACLDIYSLQTKRDLHNPVLVSLFVVGDWVTAILSFAAASASAGVTILFERDVHFCRMYPQ 120

Query: 131 --CRKFQISVVLAFLSWITIAISALIMLWILAA 162
             C ++++SV+LAF++W  IA SA+ M W+LA+
Sbjct: 121 LSCGRYELSVILAFITWSFIATSAVSMFWLLAS 153

[Close]

BLAST of Lag0016562 vs. ExPASy Swiss-Prot
Match: B6T990 (CASP-like protein 5B3 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-39
Identity = 89/151 (58.94%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 11  MLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML 70
           M D  G+PGT +G  LR+ QCV A  S+ +MATA GF N+TAFCY+IASMGLQ+ WSF L
Sbjct: 1   MKDVVGSPGTWSGMALRLSQCVSAGASMGAMATAYGFSNYTAFCYLIASMGLQLLWSFGL 60

Query: 71  ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFGDE 130
           A LD Y+L  K+ LHNP+LVSLFVVGDWVTA LS AAASAS GV++LF  D+  C    +
Sbjct: 61  ACLDVYSLKTKRDLHNPVLVSLFVVGDWVTAILSFAAASASAGVTILFERDVHFCRMYPQ 120

Query: 131 --CRKFQISVVLAFLSWITIAISALIMLWIL 160
             C ++ +SVVLAF++W  IA SA+ M W+L
Sbjct: 121 LSCGRYALSVVLAFITWSFIATSAVSMFWLL 151

[Close]

BLAST of Lag0016562 vs. ExPASy Swiss-Prot
Match: D5ACW4 (CASP-like protein 5B1 (Fragment) OS=Picea sitchensis OX=3332 PE=2 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-37
Identity = 86/151 (56.95%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 11  MLDFPGTPGTLTGFVLRILQCVFAAGSVASMATAVGFYNFTAFCYVIASMGLQVTWSFML 70
           M D PGTPGT+ G  LR+ Q +FAA SV  M T+  F NFTAFCY+ A+M LQ  WSF+L
Sbjct: 32  MKDLPGTPGTVGGLALRMGQFIFAAASVVIMVTSDEFINFTAFCYLAAAMALQFLWSFVL 91

Query: 71  ALLDAYALVRKKMLHNPILVSLFVVGDWVTATLSLAAASASGGVSVLFFSDLGHCSFGDE 130
           A +D YAL+ K+ L N IL+SLFVVGDWVTATLSLAAA ++ G++VLF  DL +C     
Sbjct: 92  ATIDVYALLIKRGLPNSILLSLFVVGDWVTATLSLAAACSTAGITVLFDKDLNYCD-QMH 151

Query: 131 CRKFQISVVLAFLSWITIAISALIMLWILAA 162
           CR++Q+S  +AF SW+ IAIS+LI L +L +
Sbjct: 152 CRRYQLSATMAFFSWVLIAISSLITLLLLVS 181

The following BLAST results are available for this feature:

BLAST of Lag0016562 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593844.1	6.1e-74	97.40	1-aminocyclopropane-1-carboxylate oxidase-like 1, partial [Cucurbita argyrosperm...	[more]
TYK08224.1	4.0e-73	93.67	CASP-like protein 5B3 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0065678.1	1.2e-72	95.45	CASP-like protein 5B3 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_022930413.1	2.0e-72	97.37	CASP-like protein 5B3 [Cucurbita moschata] >XP_023000558.1 CASP-like protein 5B3...	[more]
XP_038875242.1	7.5e-72	96.03	CASP-like protein 5B3 isoform X1 [Benincasa hispida]	[more]

BLAST of Lag0016562 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L7R5	2.8e-53	70.20	CASP-like protein 5B3 OS=Arabidopsis thaliana OX=3702 GN=At3g23200 PE=2 SV=1	[more]
B8BD96	7.1e-41	58.82	CASP-like protein 5B3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30532 PE=3 S...	[more]
Q6K478	7.1e-41	58.82	CASP-like protein 5B3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0249400 P...	[more]
B6T990	1.3e-39	58.94	CASP-like protein 5B3 OS=Zea mays OX=4577 PE=2 SV=1	[more]
D5ACW4	1.6e-37	56.95	CASP-like protein 5B1 (Fragment) OS=Picea sitchensis OX=3332 PE=2 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006702	Casparian strip membrane protein domain	PFAM	PF04535	DUF588	coord: 18..146 e-value: 3.4E-25 score: 88.6
None	No IPR available	PANTHER	PTHR32021:SF5	CASP-LIKE PROTEIN 5B3	coord: 11..161
IPR045009	CASP-like protein 5	PANTHER	PTHR32021	CASP-LIKE PROTEIN 5B3	coord: 11..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016562.1	Lag0016562.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane