Lag0016558 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016558
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ethylene-responsive transcription factor ERF098-like
Location	chr12: 38992751 .. 38993134 (-)
RNA-Seq Expression	Lag0016558
Synteny	Lag0016558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAATATGGACGAGGAAGGGAAGTCCGGCGAGGTTCGATACCGGGGCGTGCGGCGGAGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGACTCGTCGAGGCACGGGGCTCGGGTTTGGCTTGGAACTTTCAACACGGCGGAGGAGGCAGCTCGGGCCTACGACCGAGCTGCCTATGCCATGCGTGGTCATTTGGCTGTCCTGAATTTCCCTGATGAATATCCTTCTCTTGGTGGCAGCAGCAGCTCCTCTTCTTCTACTTCTGCTACGGCGTCCAGACGCCAAGGCCAGCGTGATCAAAGTCAAGTGATTGAATTGGAATGTCTGGATGATAAGGTGCTGGAGGAGCTTCTTGAGTATGAGGAGAAAAGGAAGAAGTGA

mRNA sequence

ATGCAAAATATGGACGAGGAAGGGAAGTCCGGCGAGGTTCGATACCGGGGCGTGCGGCGGAGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGACTCGTCGAGGCACGGGGCTCGGGTTTGGCTTGGAACTTTCAACACGGCGGAGGAGGCAGCTCGGGCCTACGACCGAGCTGCCTATGCCATGCGTGGTCATTTGGCTGTCCTGAATTTCCCTGATGAATATCCTTCTCTTGGTGGCAGCAGCAGCTCCTCTTCTTCTACTTCTGCTACGGCGTCCAGACGCCAAGGCCAGCGTGATCAAAGTCAAGTGATTGAATTGGAATGTCTGGATGATAAGGTGCTGGAGGAGCTTCTTGAGTATGAGGAGAAAAGGAAGAAGTGA

Coding sequence (CDS)

ATGCAAAATATGGACGAGGAAGGGAAGTCCGGCGAGGTTCGATACCGGGGCGTGCGGCGGAGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGACTCGTCGAGGCACGGGGCTCGGGTTTGGCTTGGAACTTTCAACACGGCGGAGGAGGCAGCTCGGGCCTACGACCGAGCTGCCTATGCCATGCGTGGTCATTTGGCTGTCCTGAATTTCCCTGATGAATATCCTTCTCTTGGTGGCAGCAGCAGCTCCTCTTCTTCTACTTCTGCTACGGCGTCCAGACGCCAAGGCCAGCGTGATCAAAGTCAAGTGATTGAATTGGAATGTCTGGATGATAAGGTGCTGGAGGAGCTTCTTGAGTATGAGGAGAAAAGGAAGAAGTGA

Protein sequence

MQNMDEEGKSGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEELLEYEEKRKK

Homology

[Close]

BLAST of Lag0016558 vs. NCBI nr
Match: XP_038876105.1 (ethylene-responsive transcription factor ERF098-like [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 6.3e-50
Identity = 112/129 (86.82%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEEGKS     GEVRYRGVRRRPWGKFAAEIRDSSRHGAR+WLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEGKSSNDQGGEVRYRGVRRRPWGKFAAEIRDSSRHGARIWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFP+EYPSLGGSSS     +A  SRRQGQ DQSQVIELECLDDKVLEEL
Sbjct: 61  AYMMRGHLAVLNFPNEYPSLGGSSS-----AAGGSRRQGQGDQSQVIELECLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 124

[Close]

BLAST of Lag0016558 vs. NCBI nr
Match: XP_023006327.1 (ethylene-responsive transcription factor ERF098-like [Cucurbita maxima])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 108/129 (83.72%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEE +S     GEVRYRGVRRRPWGKFAAEIRDSSR+GARVWLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEARSGSDQGGEVRYRGVRRRPWGKFAAEIRDSSRNGARVWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFPDEYPSLGGSSS SSS++    RRQGQ  +  VIELECLDDKVLEEL
Sbjct: 61  AYVMRGHLAVLNFPDEYPSLGGSSSGSSSSAPAPPRRQGQGGR-HVIELECLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 128

[Close]

BLAST of Lag0016558 vs. NCBI nr
Match: XP_023547375.1 (ethylene-responsive transcription factor ERF098-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 111/129 (86.05%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEE +S     GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEPRSGTDQGGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFPDEYPSLGG SSS SS SA ASRRQG   +  VIELECLDDKVLEEL
Sbjct: 61  AYVMRGHLAVLNFPDEYPSLGG-SSSGSSLSAPASRRQGSGGR-HVIELECLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 127

[Close]

BLAST of Lag0016558 vs. NCBI nr
Match: XP_022958792.1 (ethylene-responsive transcription factor ERF098-like [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 5.0e-47
Identity = 111/129 (86.05%), Postives = 115/129 (89.15%), Query Frame = 0


Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEE +S     GEVRYRGVRRRPWGKFAAEIRDSSR+GARVWLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEPRSGTDQGGEVRYRGVRRRPWGKFAAEIRDSSRNGARVWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFPDEYPSLGGSSS SSS SA+ASRRQG   +  VIELECLDDKVLEEL
Sbjct: 61  AYVMRGHLAVLNFPDEYPSLGGSSSGSSS-SASASRRQGSGGR-HVIELECLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 127

[Close]

BLAST of Lag0016558 vs. NCBI nr
Match: XP_008460635.1 (PREDICTED: ethylene-responsive transcription factor ERF098 [Cucumis melo] >KAA0065676.1 ethylene-responsive transcription factor ERF098 [Cucumis melo var. makuwa] >TYK08226.1 ethylene-responsive transcription factor ERF098 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0


Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEEGKS     GEVRYRGVRRRPWGKFAAEIRDSSRHGAR+WLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEGKSSNDQGGEVRYRGVRRRPWGKFAAEIRDSSRHGARIWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFP+EYPSLGGSSS+SSS+S+ A+     R Q QVIELE LDDKVLEEL
Sbjct: 61  AYMMRGHLAVLNFPNEYPSLGGSSSASSSSSSAAA----PRVQGQVIELEYLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 125

[Close]

BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: Q9LTC5 (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana OX=3702 GN=ERF098 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-33
Identity = 79/132 (59.85%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 3   NMDEEGKSGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAM 62
           N  ++ K  + R+RGVRRRPWGKFAAEIRD SR+GAR+WLGTF TAEEAARAYDRAA+ +
Sbjct: 10  NQSQDDK--QARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNL 69

Query: 63  RGHLAVLNFPDE-YPSLGG-------SSSSSSSTSATASRRQGQRDQSQVIELECLDDKV 122
           RGHLA+LNFP+E YP +         +SSSSSS+S + S    +++Q +V E E LDDKV
Sbjct: 70  RGHLAILNFPNEYYPRMDDYSLRPPYASSSSSSSSGSTSTNVSRQNQREVFEFEYLDDKV 129

Query: 123 LEELLEYEEKRK 127
           LEELL+ EE+++
Sbjct: 130 LEELLDSEERKR 139

[Close]

BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: Q9LTC6 (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana OX=3702 GN=ERF095 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-31
Identity = 73/124 (58.87%), Postives = 93/124 (75.00%), Query Frame = 0


Query: 6   EEGKSGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAMRGH 65
           E   + E++YRGVR+RPWGK+AAEIRDS+RHGARVWLGTFNTAE+AARAYDRAA+ MRG 
Sbjct: 5   ESYNTNEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQ 64

Query: 66  LAVLNFPDEYPSL----GGSSSSSSSTSATASRRQGQRDQS-QVIELECLDDKVLEELLE 125
            A+LNFP EY  +     GS  ++ ++S++  R  G  D   +VIE E LDD +LEELL+
Sbjct: 65  RAILNFPHEYQMMKDGPNGSHENAVASSSSGYRGGGGGDDGREVIEFEYLDDSLLEELLD 124

[Close]

BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: Q9LSX0 (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana OX=3702 GN=ERF096 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-31
Identity = 74/127 (58.27%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 4   MDEEGK---SGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAY 63
           MD+ G+   +   +YRGVRRRPWGK+AAEIRDS +HG RVWLGTF+TAEEAARAYD+AAY
Sbjct: 1   MDQGGRGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAY 60

Query: 64  AMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEELLE 123
           +MRG  A+LNFP EY    G SSS++   ++++         QV E E LDD VLEELLE
Sbjct: 61  SMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASASSSSRQVFEFEYLDDSVLEELLE 120

Query: 124 YEEKRKK 128
             EK  K
Sbjct: 121 EGEKPNK 127

[Close]

BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: P93822 (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana OX=3702 GN=ERF14 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-31
Identity = 76/132 (57.58%), Postives = 96/132 (72.73%), Query Frame = 0


Query: 4   MDEEGKSG--------EVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAY 63
           MD+ G+S         + +YRGVRRRPWGK+AAEIRDS +HG RVWLGTF+TAE+AARAY
Sbjct: 1   MDQGGRSSGSGGGGAEQGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAY 60

Query: 64  DRAAYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVL 123
           DRAAY+MRG  A+LNFP EY ++G  SSS+++ S+++S+        QV E E LDD VL
Sbjct: 61  DRAAYSMRGKAAILNFPHEY-NMGTGSSSTAANSSSSSQ--------QVFEFEYLDDSVL 120

Query: 124 EELLEYEEKRKK 128
           +ELLEY E   K
Sbjct: 121 DELLEYGENYNK 123

[Close]

BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: O04681 (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-21
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 14  RYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAMRGHLAVLNFPD 73
           +YRGVRRRPWGK+AAEIRDS+RHGARVWLGTF TAEEAA AYDRAA+ MRG  A+LNFP 
Sbjct: 58  KYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPS 117

Query: 74  EYPSLG--------GSSSSSSSTSATASRRQGQRDQSQVIELEC 110
           E  +           S+S +++ ++ +S  +     + V E  C
Sbjct: 118 EIVNASVSVDKLSLCSNSYTTNNNSDSSLNEVSSGTNDVFESRC 161

The following BLAST results are available for this feature:

BLAST of Lag0016558 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876105.1	6.3e-50	86.82	ethylene-responsive transcription factor ERF098-like [Benincasa hispida]	[more]
XP_023006327.1	3.8e-47	83.72	ethylene-responsive transcription factor ERF098-like [Cucurbita maxima]	[more]
XP_023547375.1	3.8e-47	86.05	ethylene-responsive transcription factor ERF098-like [Cucurbita pepo subsp. pepo...	[more]
XP_022958792.1	5.0e-47	86.05	ethylene-responsive transcription factor ERF098-like [Cucurbita moschata]	[more]
XP_008460635.1	1.5e-46	83.72	PREDICTED: ethylene-responsive transcription factor ERF098 [Cucumis melo] >KAA00...	[more]

BLAST of Lag0016558 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTC5	4.3e-33	59.85	Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LTC6	5.2e-31	58.87	Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LSX0	8.9e-31	58.27	Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana OX=3702 ...	[more]
P93822	8.9e-31	57.58	Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana OX=3702 GN=E...	[more]
O04681	3.7e-21	53.85	Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicu...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 38..54 score: 73.69 coord: 15..26 score: 72.73
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 14..78 e-value: 7.6E-35 score: 131.8
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 14..65 e-value: 1.7E-16 score: 60.2
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 14..72 score: 23.801672
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 14..73 e-value: 4.19814E-19 score: 73.0747
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 13..73 e-value: 3.8E-28 score: 99.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..103
None	No IPR available	PANTHER	PTHR31190:SF86	OS09G0571700 PROTEIN	coord: 9..122
IPR044808	Ethylene-responsive transcription factor	PANTHER	PTHR31190	DNA-BINDING DOMAIN	coord: 9..122
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 14..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016558.1	Lag0016558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity