Lag0016537 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016537
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description11S globulin subunit beta
Locationchr12: 38738650 .. 38739243 (-)
RNA-Seq ExpressionLag0016537
SyntenyLag0016537
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAGCCTGGATACTCTAATGCTCCTAAACTCATATTCGTTGTCCAAGGCTCCGACATTCGAGGCGTTGCCATTCCCGGCTGTCCAGAGACTTACCAAACCGATATGCGAAGATCGCAATCCGCAGAATCTGCGTTCAGAGACCAACACTAGAAGATCCGCGAGTTCAGAGAGGGAGATCTCCTCATTCTCCCGGCCGGAGTTTCTCACTGGATCTATAACCGAGGACAATCTGATCTCATCTTGATCGTATTCGCTGACACTCGCAATGTCGCCAACCAAATCGATCCCTACCTCAGAGTAAGTTAACAAAAACAGAGTATAACGATTTAATCACTGATTTGAAAAAGAAGTCGCTGAGATTCTTTGTTGAATTTGTTTTAGAAATTTCACCTCGCCGGAAGGCCAGAGCAGATCGAAAGAGGTGTAGAGGAATGGGAAAGAAGAGGTCGCAGGGGATCCGCCGAGGAGAAATCAGGCAATGTGTTCAGCGGATTTGCAGACGAGCTTCTGGAGGAAGCTTTCCAGATCGATAGTGGATTGGTGAGGCGGCTGAAGGGAGAAGACGATGAGAGAGACAAGATCGTGTAA

mRNA sequence

ATGCTTCAGCCTGGATACTCTAATGCTCCTAAACTCATATTCGTTGTCCAAGGCTCCGACATTCGAGGCAAGATCCGCGAGTTCAGAGAGGGAGATCTCCTCATTCTCCCGGCCGGAGTTTCTCACTGGATCTATAACCGAGGACAATCTGATCTCATCTTGATCGTATTCGCTGACACTCGCAATGTCGCCAACCAAATCGATCCCTACCTCAGAAAATTTCACCTCGCCGGAAGGCCAGAGCAGATCGAAAGAGGTGTAGAGGAATGGGAAAGAAGAGGTCGCAGGGGATCCGCCGAGGAGAAATCAGGCAATGTGTTCAGCGGATTTGCAGACGAGCTTCTGGAGGAAGCTTTCCAGATCGATAGTGGATTGGTGAGGCGGCTGAAGGGAGAAGACGATGAGAGAGACAAGATCGTGTAA

Coding sequence (CDS)

ATGCTTCAGCCTGGATACTCTAATGCTCCTAAACTCATATTCGTTGTCCAAGGCTCCGACATTCGAGGCAAGATCCGCGAGTTCAGAGAGGGAGATCTCCTCATTCTCCCGGCCGGAGTTTCTCACTGGATCTATAACCGAGGACAATCTGATCTCATCTTGATCGTATTCGCTGACACTCGCAATGTCGCCAACCAAATCGATCCCTACCTCAGAAAATTTCACCTCGCCGGAAGGCCAGAGCAGATCGAAAGAGGTGTAGAGGAATGGGAAAGAAGAGGTCGCAGGGGATCCGCCGAGGAGAAATCAGGCAATGTGTTCAGCGGATTTGCAGACGAGCTTCTGGAGGAAGCTTTCCAGATCGATAGTGGATTGGTGAGGCGGCTGAAGGGAGAAGACGATGAGAGAGACAAGATCGTGTAA

Protein sequence

MLQPGYSNAPKLIFVVQGSDIRGKIREFREGDLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPEQIERGVEEWERRGRRGSAEEKSGNVFSGFADELLEEAFQIDSGLVRRLKGEDDERDKIV
Homology
BLAST of Lag0016537 vs. NCBI nr
Match: P13744.1 (RecName: Full=11S globulin subunit beta; Contains: RecName: Full=11S globulin gamma chain; AltName: Full=11S globulin acidic chain; Contains: RecName: Full=11S globulin delta chain; AltName: Full=11S globulin basic chain; Flags: Precursor [Cucurbita maxima] >pir|FWPU1B| 11S globulin beta subunit precursor - cucurbita cv. Kurokawa Amakuri [Cucurbita hybrid cultivar] >AAA33110.1 11-S globulin beta-subunit precursor [Cucurbita pepo])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 117/169 (69.23%), Postives = 130/169 (76.92%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG-----------------------------KIREFREG 60
           +L PG+SNAPKLIFV QG  IRG                             KIR FREG
Sbjct: 96  LLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREG 155

Query: 61  DLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPEQIERGVEEWE 120
           DLL++PAGVSHW+YNRGQSDL+LIVFADTRNVANQIDPYLRKF+LAGRPEQ+ERGVEEWE
Sbjct: 156 DLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWE 215

Query: 121 RRGRRGSAEEKSGNVFSGFADELLEEAFQIDSGLVRRLKGEDDERDKIV 141
           R  R+GS+ EKSGN+FSGFADE LEEAFQID GLVR+LKGEDDERD+IV
Sbjct: 216 RSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 264

BLAST of Lag0016537 vs. NCBI nr
Match: XP_023000493.1 (11S globulin subunit beta [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 117/169 (69.23%), Postives = 130/169 (76.92%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG-----------------------------KIREFREG 60
           +L PG+SNAPKLIFV QG  IRG                             KIR FREG
Sbjct: 96  LLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREG 155

Query: 61  DLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPEQIERGVEEWE 120
           DLL++PAGVSHW+YNRGQSDL+LIVFADTRNVANQIDPYLRKF+LAGRPEQ+ERGVEEWE
Sbjct: 156 DLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWE 215

Query: 121 RRGRRGSAEEKSGNVFSGFADELLEEAFQIDSGLVRRLKGEDDERDKIV 141
           R  R+GS+ EKSGN+FSGFADE LEEAFQID GLVR+LKGEDDERD+IV
Sbjct: 216 RSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 264

BLAST of Lag0016537 vs. NCBI nr
Match: 2E9Q_A (Recombinant pro-11S globulin of pumpkin [Cucurbita maxima] >2EVX_A Crystal structure of pumpkin seed globulin [Cucurbita maxima])

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 117/169 (69.23%), Postives = 130/169 (76.92%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG-----------------------------KIREFREG 60
           +L PG+SNAPKLIFV QG  IRG                             KIR FREG
Sbjct: 75  LLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREG 134

Query: 61  DLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPEQIERGVEEWE 120
           DLL++PAGVSHW+YNRGQSDL+LIVFADTRNVANQIDPYLRKF+LAGRPEQ+ERGVEEWE
Sbjct: 135 DLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWE 194

Query: 121 RRGRRGSAEEKSGNVFSGFADELLEEAFQIDSGLVRRLKGEDDERDKIV 141
           R  R+GS+ EKSGN+FSGFADE LEEAFQID GLVR+LKGEDDERD+IV
Sbjct: 195 RSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 243

BLAST of Lag0016537 vs. NCBI nr
Match: XP_022964523.1 (11S globulin subunit beta [Cucurbita moschata])

HSP 1 Score: 230.7 bits (587), Expect = 7.7e-57
Identity = 116/169 (68.64%), Postives = 130/169 (76.92%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG-----------------------------KIREFREG 60
           +L PG+SNAPKL+FV QG  IRG                             KIR FREG
Sbjct: 96  LLLPGFSNAPKLVFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFRDQHQKIRPFREG 155

Query: 61  DLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPEQIERGVEEWE 120
           DLL++PAGVSHW+YNRGQSDL+LIVFADTRNVANQIDPYLRKF+LAGRPEQ+ERGVEEWE
Sbjct: 156 DLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWE 215

Query: 121 RRGRRGSAEEKSGNVFSGFADELLEEAFQIDSGLVRRLKGEDDERDKIV 141
           R  R+GS+ EKSGN+FSGFADE LEEAFQID GLVR+LKGEDDERD+IV
Sbjct: 216 RSSRKGSSGEKSGNLFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 264

BLAST of Lag0016537 vs. NCBI nr
Match: XP_023515280.1 (11S globulin subunit beta [Cucurbita pepo subsp. pepo] >KAG7026167.1 hypothetical protein SDJN02_12666, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 230.7 bits (587), Expect = 7.7e-57
Identity = 116/169 (68.64%), Postives = 130/169 (76.92%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG-----------------------------KIREFREG 60
           +L PG+SNAPKL+FV QG  IRG                             KIR FREG
Sbjct: 96  LLLPGFSNAPKLVFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFRDQHQKIRPFREG 155

Query: 61  DLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPEQIERGVEEWE 120
           DLL++PAGVSHW+YNRGQSDL+LIVFADTRNVANQIDPYLRKF+LAGRPEQ+ERGVEEWE
Sbjct: 156 DLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWE 215

Query: 121 RRGRRGSAEEKSGNVFSGFADELLEEAFQIDSGLVRRLKGEDDERDKIV 141
           R  R+GS+ EKSGN+FSGFADE LEEAFQID GLVR+LKGEDDERD+IV
Sbjct: 216 RSSRKGSSGEKSGNLFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 264

BLAST of Lag0016537 vs. ExPASy Swiss-Prot
Match: P13744 (11S globulin subunit beta OS=Cucurbita maxima OX=3661 PE=1 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.5e-60
Identity = 117/169 (69.23%), Postives = 130/169 (76.92%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG-----------------------------KIREFREG 60
           +L PG+SNAPKLIFV QG  IRG                             KIR FREG
Sbjct: 96  LLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREG 155

Query: 61  DLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPEQIERGVEEWE 120
           DLL++PAGVSHW+YNRGQSDL+LIVFADTRNVANQIDPYLRKF+LAGRPEQ+ERGVEEWE
Sbjct: 156 DLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWE 215

Query: 121 RRGRRGSAEEKSGNVFSGFADELLEEAFQIDSGLVRRLKGEDDERDKIV 141
           R  R+GS+ EKSGN+FSGFADE LEEAFQID GLVR+LKGEDDERD+IV
Sbjct: 216 RSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIV 264

BLAST of Lag0016537 vs. ExPASy Swiss-Prot
Match: Q8GZP6 (11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.6e-27
Identity = 65/164 (39.63%), Postives = 89/164 (54.27%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG------------------------------KIREFRE 60
           +L P YSNAP+LI+VVQG  + G                              KIR FR 
Sbjct: 73  LLLPQYSNAPQLIYVVQGEGMTGISYPGCPETYQAPQQGRQQGQSGRFQDRHQKIRRFRR 132

Query: 61  GDLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPEQIERGVEEW 120
           GD++ +PAGV+HW YN G S ++ +   D  N  NQ+D   RKFHLAG P+ + +  ++ 
Sbjct: 133 GDIIAIPAGVAHWCYNEGNSPVVTVTLLDVSNSQNQLDRTPRKFHLAGNPKDVFQQQQQH 192

Query: 121 ERRGRRGSAEEKSGNVFSGFADELLEEAFQIDSGLVRRLKGEDD 135
           + RGR         N+FSGF  ELL EAFQ+D  L+++LK ED+
Sbjct: 193 QSRGR---------NLFSGFDTELLAEAFQVDERLIKQLKSEDN 227

BLAST of Lag0016537 vs. ExPASy Swiss-Prot
Match: B5KVH4 (11S globulin seed storage protein 1 OS=Carya illinoinensis OX=32201 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-26
Identity = 70/184 (38.04%), Postives = 91/184 (49.46%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG-------------------------------KIREFR 60
           +L P YSNAP+L+++ +G  I G                               KIR FR
Sbjct: 85  LLLPHYSNAPQLVYIARGRGITGVLFPGCPETFEESQRQSQQGQRREFQQDRHQKIRHFR 144

Query: 61  EGDLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRP--------- 120
           EGD++  PAGV+HW YN G S ++ I   DT N ANQ+D   R F+LAG P         
Sbjct: 145 EGDIIAFPAGVAHWCYNDGSSPVVAIFLLDTHNNANQLDQNPRNFYLAGNPDDEFRPQGQ 204

Query: 121 ---EQIERGVEEWERRGRRGSAEEKSG-NVFSGFADELLEEAFQIDSGLVRRLKGEDDER 141
              EQ  R  +  +RRG  G  +   G NVFSGF  E L +AF +D+   RRL+ E+D R
Sbjct: 205 QEYEQHRRQQQHQQRRGEHGEQQRDLGNNVFSGFDAEFLADAFNVDTETARRLQSENDHR 264

BLAST of Lag0016537 vs. ExPASy Swiss-Prot
Match: A0A1L6K371 (11S globulin OS=Juglans nigra OX=16719 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 68/188 (36.17%), Postives = 92/188 (48.94%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG-----------------------------------KI 60
           +L P YSNAP+L+++V+G  I G                                   KI
Sbjct: 83  LLLPQYSNAPQLLYIVKGRGITGVLFPGCPETFEESQQGQSRIRPSLRSASFQRDRHQKI 142

Query: 61  REFREGDLLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRP----- 120
           R FREGD++  PAGV+HW YN G + ++ +   DT N ANQ+D   R F+LAG P     
Sbjct: 143 RHFREGDVIAFPAGVAHWCYNDGDTPVVAVALMDTTNNANQLDQNPRNFYLAGNPDDEFR 202

Query: 121 -------EQIERGVEEWERRGRRGSAEEKSG-NVFSGFADELLEEAFQIDSGLVRRLKGE 141
                  EQ  R  +  +R G  G  +  SG NVFSGF  + L +AF +D+   RRL+ E
Sbjct: 203 PQGQQEYEQHRRQQQHQQRHGEPGQQQRGSGNNVFSGFDADFLADAFNVDTETARRLQSE 262

BLAST of Lag0016537 vs. ExPASy Swiss-Prot
Match: P09800 (Legumin B OS=Gossypium hirsutum OX=3635 GN=LEGB PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 69/180 (38.33%), Postives = 94/180 (52.22%), Query Frame = 0

Query: 1   MLQPGYSNAPKLIFVVQGSDIRG----------------------------KIREFREGD 60
           +L P +++AP L +V QG  I G                            K+R  +EGD
Sbjct: 98  LLLPSFTSAPMLFYVEQGEGIHGAVFPGCPETYQSQSQQNIQDRPQRDQHQKLRRLKEGD 157

Query: 61  LLILPAGVSHWIYNRGQSDLILIVFADTRNVANQIDPYLRKFHLAGRPE-QIERGVEEWE 120
           ++ LPAGV+HWI+N G+S L+L+   D  N ANQ+D   RKF LAG P+  + RG +  +
Sbjct: 158 VVALPAGVAHWIFNNGRSQLVLVALVDVGNDANQLDENFRKFFLAGSPQGGVVRGGQSRD 217

Query: 121 R-----RGRRGSAEEK------SGNVFSGFADELLEEAFQIDSGLVRRLKGEDDERDKIV 141
           R     R +RG  EE+        NV SGF D LL +AF ID+ L R+L+ E D R  IV
Sbjct: 218 RNQRQSRTQRGEREEEESQESGGNNVLSGFRDNLLAQAFGIDTRLARKLQNERDNRGAIV 277

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P13744.13.4e-5769.23RecName: Full=11S globulin subunit beta; Contains: RecName: Full=11S globulin ga... [more]
XP_023000493.13.4e-5769.2311S globulin subunit beta [Cucurbita maxima][more]
2E9Q_A3.4e-5769.23Recombinant pro-11S globulin of pumpkin [Cucurbita maxima] >2EVX_A Crystal struc... [more]
XP_022964523.17.7e-5768.6411S globulin subunit beta [Cucurbita moschata][more]
XP_023515280.17.7e-5768.6411S globulin subunit beta [Cucurbita pepo subsp. pepo] >KAG7026167.1 hypothetica... [more]
Match NameE-valueIdentityDescription
P137444.5e-6069.2311S globulin subunit beta OS=Cucurbita maxima OX=3661 PE=1 SV=1[more]
Q8GZP66.6e-2739.6311S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occident... [more]
B5KVH49.5e-2638.0411S globulin seed storage protein 1 OS=Carya illinoinensis OX=32201 PE=1 SV=1[more]
A0A1L6K3712.3e-2436.1711S globulin OS=Juglans nigra OX=16719 PE=1 SV=1[more]
P098002.3e-2438.33Legumin B OS=Gossypium hirsutum OX=3635 GN=LEGB PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006045Cupin 1SMARTSM00835Cupin_1_3coord: 1..127
e-value: 7.0E-4
score: 12.9
IPR006045Cupin 1PFAMPF00190Cupin_1coord: 1..81
e-value: 7.0E-12
score: 45.2
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 1..140
e-value: 3.6E-44
score: 152.8
NoneNo IPR availablePANTHERPTHR31189:SF48LEGUMIN Bcoord: 24..140
NoneNo IPR availablePANTHERPTHR31189OS03G0336100 PROTEIN-RELATEDcoord: 24..140
NoneNo IPR availableCDDcd02242cupin_11S_legumin_Ncoord: 1..140
e-value: 1.0387E-50
score: 158.517
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016537.1Lag0016537.1mRNA