Lag0016532 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016532
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 38684826 .. 38688085 (-)
RNA-Seq Expression	Lag0016532
Synteny	Lag0016532

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGATTTTTAACATCTGTATGGTGTCTTCATATTCGTCGTCGGATTCCATACCTCATCCCTCCCCGCCGCGCCCCGCCCCGGTATGTATATGTGCCTCTTTAGGGGTTCATATGATTAATTATAAAGCTTTTTAGACTCATCAAACAGAGAGAAATTAACAAAGCTCTCGGGAAATTGTTAATACATTTGAGGCGGCAGTAACTGTAATAAATACCTCTCTTGTATTCATTCTTTCATGGTTAAGAGCTTCGACACGAACCTGAAAGATCTAATTGCCTCTGTGGCCTTGAATCAGAAGACTGCAGCAGAACTTTTTGGATGAATTAGAAAGAAAAATTGGCTTTTAACTTTCTGCTGCAACTGTTTTCTTATGAAGATCTGATTTTATATTGACTGTTACTTCCCCTTTCATTTTCAAATGTTGTCTGTAATGGAAGAGAGAATATTTGCCTTTTTGGAGGATAGCTACAAGAGATTTGAACATGAAAAATGAACGTTTTTTTTTTAATTACAATGTGTGGGGTGAGGGATTCAAACTATATGTCAGTTAAGTTATGCTCTTGTTGGCAAAAAAATGAAGGACGTTTATAGTATGTTTGAGGTGAGTTTATTTTATGAGAGAATCATCAAGTAGGTTGATCAACAATGCATTTTAATCATGTTTGATAATCATTTGGTTTATGGTTTTTTGTTTTTGAAAATTAAGTTTTATTTTGACCTATGAGTTTCCATGTTTTGTTATGTAGTTTTTACAAATGTTTTTAAAATTCAAGTCAAGTTTTGAAAACTAGAAAAAGTAGTTAAAACTTGAAGAATTTGACTAAGAATATATACTTTCTCTTTAAAGGAAGATAAATATCATTATAAAGAAATTATGGAAAAACAAGTATAATTTTCAAAATTCAAAAACTAAATGATGATCAAACATGACCTTCCACTCCATTTCAAGAAACGTTTGGGAGTGGTTTCACTTGTGTTATCAAAATTACCCTTCTATTTAAAAGGGGTGATGTTTGGCAATGATAGAAAAGTGATTTTGGAAGAATCTAGAGTTACTTTATTGGTTTCTTAATTTTGATAAGTGAGAGATTTTGTTTTTAAAATGACTATTATTTCAAATTGAAAAAAAGAATCCTTCTATTCCACTCCATTTCATCCTAAAAATTTGTAAAAAGTTATTTCTTTTCCCTTCATTATGTCAAAATTTTCTTTTATCCATTTTTCTCACTTTTTCTCTTTCCAATATTTTAAAATCTCTCTAACTTTTTTATCCTCTAATCTTGTACTTATTTTGCTAACTTTTTTCTCTCAAATTTCCCCCTCCCCCTACCTCCTTTTTTTTTTTTTTTTTTTTTTTCTTCAAGTTTTTTCCTTAAAATTTTTGTATATCTCTCTATTTTTTTATTTTTAATCTTTGAATTTTCACTATCTTAAAATTTTCTCTATTCAATTTTTGTTTTCTCATTCTAAAGTTATATTTGAATAATTTTACATAAACAATTATAATTAATTCACTTAGGTTTAAAACACTAATTTTAAAGTAACTCTCGAACGTTCACTTCATTCAAAATCACCACTCTTGATGGTATGAAAATCACTTTTAAAAGTGCAAAACCAAACATTAAAATGAATATATAAAAATAAATTTTATAAGCTTAATTTCCAAAAATCAAATGATTATCAAACGGAGTCTAAAATGTTAGTACCATAGTGAACAAAGAACAAGTATTTTGTTTTGTTTATATATATATAAGTGCCTCTAAAAAAAATAGAAAAACTAATAATTTAAAGCGTGTTTAGCGTGATGAGTGATTTTAAAGGATCGAAAATTAATGGTTATAAAAATCACTTTTGGTCCTTAAATTTTCATGAAAGTAACAATTTAGTCTCTAAACTTTAATTTGTAACGATCTAGTCCATATACTTTCAATTTTGTAACACTGTACTTCCTAAACATTCATATGTAACAATTTAGTCCCTGTACTTTGAAATTTGTAACAATTTAGTTTCTATTGTGAAAATTAATGTTAAGATTTAATGAATTTCTTATATAGATAGATTAGGCCCCGTTTGATAACCATTTCGTTTTTTGTTTTTGAAAATTATGCTTGTTTTCTCCTAAATTCTTTATCATGACTTTCATCCTAGTTAATGTTGCATTTGAATTCCTAGCCAAATTTTACAAACAAAAACAAGTTTTTGAAAACTACTTTTTTTTTTTCCAAAATTGGACTTGGTTTTTGAAAAAAAGGTAGAAGAGCAATACTAAAACCAAGAAACTTATATGTGAAAGTACGTGTGTATAAGCTTAATTTTCAAAAACCAGAAACAAAAACCAAATGATTATCAAACAGACCTTTAATAAACCAATTTGGGACCTAATATGTTTATAAGCTACAAAGTTTAATCATTAAATAATAAAAATCGACATTTAATTTTGATGAATTTTTTTTGCAATGAAGATTAAATTGTTACAAATTTGAAAATATACATACTAAAAATTATTAGTTATTAAAGTTTTTGAACTAAATCATTACAAATCAAAGTTTGGAGATTAGGATTCGAACTGGATCGAAGATACATGTCAAAGTCAATCACCATTTTTTTTAAAAGAAAAAGGACATGTTAATTACCATCAAACTATGCTTCTTTCGCAACCAAATGTATTTATAGATTCTATGCATTTACCCCTCAAATTCAAATAAAAAAAATAATTAATGGGGCCCAAGCCAAGCCGAAGCGAACGCCAATGATTTGACAAATACTGCCTCCGTGGAACAAATCAACGGCTGTCATGTCCCCTTAAAGAACGACGGCCACTCCCGTCCGTACGATCGCCCATTCCACTGAACTTACACTTCGTTCTACAGTGGTTCTGCTGTTACAGTTCGATCGGAGTCGGCCCACCTCCCCTTCCGGCGAACCCCCTTTTTGCCCTTTGGATCCACTCAGATTCCAAAAAGCACACTCCATATCCCTCATAATTACCACAATACCCCTCCGTTCAACTCCAATTCCCTCTCTACTCCCGCATGCAGCTCCGCTACTGTCCTCCATCGGCGATTCTTCCGGTTTCGGAGCTTCTAAGTCTGGCGGAATTCGCCGCGGTTTGGTTTCAAGTGTTGTTGATCACCAGTTGTTGTTGCTTCGTTTGTTTTTGAAGATCTTGCTTGAAGTGATTTCCACTGGAGTGAGGGTAGCGTGTCGAGTTCATGAAGATTGGGGATTAGGTTTTCGGTTTGTGGTGATTTGA

mRNA sequence

ATGATGATGATTTTTAACATCTGTATGGTGTCTTCATATTCGTCGTCGGATTCCATACCTCATCCCTCCCCGCCGCGCCCCGCCCCGTTCGATCGGAGTCGGCCCACCTCCCCTTCCGGCGAACCCCCTTTTTGCCCTTTGGATCCACTCAGATTCCAAAAAGCACACTCCATATCCCTCATAATTACCACAATACCCCTCCGTTCAACTCCAATTCCCTCTCTACTCCCGCATGCAGCTCCGCTACTGTCCTCCATCGGCGATTCTTCCGGTTTCGGAGCTTCTAAGTCTGGCGGAATTCGCCGCGGTTTGGTTTCAAGTGTTGTTGATCACCAGTTGTTGTTGCTTCGTTTGTTTTTGAAGATCTTGCTTGAAGTGATTTCCACTGGAGTGAGGGTAGCGTGTCGAGTTCATGAAGATTGGGGATTAGGTTTTCGGTTTGTGGTGATTTGA

Coding sequence (CDS)

ATGATGATGATTTTTAACATCTGTATGGTGTCTTCATATTCGTCGTCGGATTCCATACCTCATCCCTCCCCGCCGCGCCCCGCCCCGTTCGATCGGAGTCGGCCCACCTCCCCTTCCGGCGAACCCCCTTTTTGCCCTTTGGATCCACTCAGATTCCAAAAAGCACACTCCATATCCCTCATAATTACCACAATACCCCTCCGTTCAACTCCAATTCCCTCTCTACTCCCGCATGCAGCTCCGCTACTGTCCTCCATCGGCGATTCTTCCGGTTTCGGAGCTTCTAAGTCTGGCGGAATTCGCCGCGGTTTGGTTTCAAGTGTTGTTGATCACCAGTTGTTGTTGCTTCGTTTGTTTTTGAAGATCTTGCTTGAAGTGATTTCCACTGGAGTGAGGGTAGCGTGTCGAGTTCATGAAGATTGGGGATTAGGTTTTCGGTTTGTGGTGATTTGA

Protein sequence

MMMIFNICMVSSYSSSDSIPHPSPPRPAPFDRSRPTSPSGEPPFCPLDPLRFQKAHSISLIITTIPLRSTPIPSLLPHAAPLLSSIGDSSGFGASKSGGIRRGLVSSVVDHQLLLLRLFLKILLEVISTGVRVACRVHEDWGLGFRFVVI

Homology

[Close]

BLAST of Lag0016532 vs. NCBI nr
Match: KAG6574911.1 (putative serine/threonine protein phosphatase 2A regulatory subunit B''delta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-09
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 62  ITTIPLRSTPIPSLLPHAAPLLSSIGDSSGFGASKSGGIRRGLVSSVVDHQLLLLR---- 121
           I+T+ LR T I SLLPHAAP LSSIG SSGFGAS+S        S VV   +LL+     
Sbjct: 545 ISTVFLRPTRILSLLPHAAPSLSSIGHSSGFGASESA------KSVVVWFHVLLITSCCC 604

Query: 122 --LFLKILLEVISTGVRVACRVHEDWGLG 145
              F +   +V+ +GVRV C VHE+WGLG
Sbjct: 605 VVCFWRSYFKVLRSGVRVECGVHEEWGLG 627

The following BLAST results are available for this feature:

BLAST of Lag0016532 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574911.1	8.3e-09	51.69	putative serine/threonine protein phosphatase 2A regulatory subunit B''delta, pa...	[more]

BLAST of Lag0016532 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016532.1	Lag0016532.1	mRNA