Lag0016523 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016523
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionEmbryo sac development arrest protein
Locationchr12: 38623626 .. 38624000 (+)
RNA-Seq ExpressionLag0016523
SyntenyLag0016523
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTTCACTCACGCACCACCACCACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGCCGTTTGTGAAGCCGAAACCTTTGGGAGCCGACTCGGTTGCGTCGAATCGGCTTCTAGCCGGCTACCTGGCTCACGAGTTTCTCAGCAGAGGCACTTTGTTTGGGGAGAAGTACGAGCCGGCTCGAAGCGAAGCCGCGTCCATGGCTAGCTGTTCGCCAGCCGAGTGTAAGAGGACGAAGCCGGAAGCCAGAAAGGAAAATCAGAGCTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTGA

mRNA sequence

ATGAGTGTTCACTCACGCACCACCACCACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGCCGTTTGTGAAGCCGAAACCTTTGGGAGCCGACTCGGTTGCGTCGAATCGGCTTCTAGCCGGCTACCTGGCTCACGAGTTTCTCAGCAGAGGCACTTTGTTTGGGGAGAAGTACGAGCCGGCTCGAAGCGAAGCCGCGTCCATGGCTAGCTGTTCGCCAGCCGAGTGTAAGAGGACGAAGCCGGAAGCCAGAAAGGAAAATCAGAGCTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTGA

Coding sequence (CDS)

ATGAGTGTTCACTCACGCACCACCACCACCATGTTGCCTCCTGGGGCGTCAAGGAAGCGAAAGGAGGTTGAGCCGCCGTTTGTGAAGCCGAAACCTTTGGGAGCCGACTCGGTTGCGTCGAATCGGCTTCTAGCCGGCTACCTGGCTCACGAGTTTCTCAGCAGAGGCACTTTGTTTGGGGAGAAGTACGAGCCGGCTCGAAGCGAAGCCGCGTCCATGGCTAGCTGTTCGCCAGCCGAGTGTAAGAGGACGAAGCCGGAAGCCAGAAAGGAAAATCAGAGCTATGCTGAGGTGGCAAGCATCTTGAAGATGGATGGGGCCCACTTGCCTGGGATTGTTAACCCGGCCCAGCTCGCTCGGTGGATTAAAATGTGA

Protein sequence

MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKPLGADSVASNRLLAGYLAHEFLSRGTLFGEKYEPARSEAASMASCSPAECKRTKPEARKENQSYAEVASILKMDGAHLPGIVNPAQLARWIKM
Homology
BLAST of Lag0016523 vs. NCBI nr
Match: XP_023547636.1 (uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637.1 uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-48
Identity = 108/132 (81.82%), Postives = 112/132 (84.85%), Query Frame = 0

Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKPLGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MSVHSRT TTMLPP ASRKRKEVE PFVKPK  G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA--------RKENQSYAEVASILKMDGAHLPGI 120
           EKYEPARSEA  M S  P+ECKRTKPEA        RKEN SYAEVASILKMDGAHLPGI
Sbjct: 61  EKYEPARSEAVGMTSSQPSECKRTKPEAAAAAAPSVRKENHSYAEVASILKMDGAHLPGI 120

Query: 121 VNPAQLARWIKM 125
           VNPAQLARWIKM
Sbjct: 121 VNPAQLARWIKM 131

BLAST of Lag0016523 vs. NCBI nr
Match: KAG6574904.1 (hypothetical protein SDJN03_25543, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-48
Identity = 108/134 (80.60%), Postives = 112/134 (83.58%), Query Frame = 0

Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKPLGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MSVHSRT TTMLPP ASRKRKEVE PFVKPK  G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA----------RKENQSYAEVASILKMDGAHLP 120
           EKYEPARSEA  M S  P+ECKR KPEA          RKENQSYAEVASILKMDGAHLP
Sbjct: 61  EKYEPARSEAVRMTSSQPSECKRMKPEAATAAAAAPSVRKENQSYAEVASILKMDGAHLP 120

Query: 121 GIVNPAQLARWIKM 125
           GIVNPAQLARWIKM
Sbjct: 121 GIVNPAQLARWIKM 133

BLAST of Lag0016523 vs. NCBI nr
Match: XP_023006321.1 (uncharacterized protein LOC111499092 [Cucurbita maxima])

HSP 1 Score: 200.3 bits (508), Expect = 9.8e-48
Identity = 106/130 (81.54%), Postives = 110/130 (84.62%), Query Frame = 0

Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKPLGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MS HSRT TTMLPP ASRKRKEVE PFVKPK  G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSFHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA------RKENQSYAEVASILKMDGAHLPGIVN 120
           EKYEP RSEA  M S  P+ECKRTKPEA      RKEN SYAEVASILKMDGAHLPGIVN
Sbjct: 61  EKYEPPRSEAVGMTSSQPSECKRTKPEAAAAPSVRKENHSYAEVASILKMDGAHLPGIVN 120

Query: 121 PAQLARWIKM 125
           PAQLARWIKM
Sbjct: 121 PAQLARWIKM 129

BLAST of Lag0016523 vs. NCBI nr
Match: KAG7013475.1 (hypothetical protein SDJN02_23641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 9.8e-48
Identity = 107/134 (79.85%), Postives = 112/134 (83.58%), Query Frame = 0

Query: 1   MSVHSRTTTTMLPPGASRKRKEVEPPFVKPKPLGADSVASNRLLAGYLAHEFLSRGTLFG 60
           MSVHSRT TTMLPP ASRKRKEVE PFVKPK  G DSV+SN+LLAGYLAHEFLS+GTLFG
Sbjct: 1   MSVHSRTITTMLPPRASRKRKEVE-PFVKPKATGVDSVSSNQLLAGYLAHEFLSKGTLFG 60

Query: 61  EKYEPARSEAASMASCSPAECKRTKPEA----------RKENQSYAEVASILKMDGAHLP 120
           EKYEPARSEA  M S  P+ECKR KPEA          RKENQSYAEVASILKMDGAHLP
Sbjct: 61  EKYEPARSEAVRMTSSQPSECKRMKPEAATAAAAAPSVRKENQSYAEVASILKMDGAHLP 120

Query: 121 GIVNPAQLARWIKM 125
           GIVNPAQLARWIK+
Sbjct: 121 GIVNPAQLARWIKI 133

BLAST of Lag0016523 vs. NCBI nr
Match: XP_022964143.1 (uncharacterized protein LOC111464257 [Cucurbita moschata])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 107/129 (82.95%), Postives = 111/129 (86.05%), Query Frame = 0

Query: 2   SVHSRTTTTMLPPGASRKRKEVEPPFVKPKPLGADSVASNRLLAGYLAHEFLSRGTLFGE 61
           SVHSRTTTTMLPPGASRKRKEVE  FVKPK +GADSV SNRLLAGYLAHEFLS+GTLFGE
Sbjct: 3   SVHSRTTTTMLPPGASRKRKEVE-AFVKPKAVGADSVVSNRLLAGYLAHEFLSKGTLFGE 62

Query: 62  KYEPARSEAASMASCSPAECKRTKPEA------RKENQSYAEVASILKMDGAHLPGIVNP 121
           KYEPARSEA  M    PAE K+TKPEA       KENQSYAEVASILKM+GAHLPGIVNP
Sbjct: 63  KYEPARSEAVGMTCSRPAEYKKTKPEAAAAPSVEKENQSYAEVASILKMEGAHLPGIVNP 122

Query: 122 AQLARWIKM 125
           AQLARWIKM
Sbjct: 123 AQLARWIKM 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023547636.11.2e-4881.82uncharacterized protein LOC111806520 [Cucurbita pepo subsp. pepo] >XP_023547637.... [more]
KAG6574904.13.4e-4880.60hypothetical protein SDJN03_25543, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023006321.19.8e-4881.54uncharacterized protein LOC111499092 [Cucurbita maxima][more]
KAG7013475.19.8e-4879.85hypothetical protein SDJN02_23641, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022964143.11.3e-4782.95uncharacterized protein LOC111464257 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR34657EMBRYO SAC DEVELOPMENT ARREST 6coord: 20..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016523.1Lag0016523.1mRNA