Lag0016512 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016512
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Actin-related protein 2/3 complex subunit 4
Location	chr12: 38513583 .. 38517028 (-)
RNA-Seq Expression	Lag0016512
Synteny	Lag0016512

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTAATGGACAAAGTCGCTTCTGGATTCGAAAACGTTTTACGATTTCTTCTTAGTATTGAGATGGCTTGTGGAGGAAGCAAGCTTCCATCTGATGAGCTTCTCACTTTGTGTTTTCGGCTTTTGATTGTGTGATTAGTCTAAATACTTAATTGTAGAATGAGATTGATCTTTTTTTTTTTTTTTTTTTTCCCTTTCTTTCCTACGTAATTTTCCATCTGTATATGCAAACTCAGGCAACTGCTTTACGCTTGTATTTGACATGCATACGGAACAGTCTTGAAGCCGCGATTTGCCTTCAGGTATTTCTATCGTTGTCGCGTTGGTGTTATTTCGATTCAATTTCGTTCGAGTGGTGACTTTTTGCAGTTGGATATATTATTTCTGGAATCGAACTTATTAGGTTCTGTAAAATAGTTCGTTCTTGATTATCTGAGAGTTATGTTAGCTGACTTTTCGTTCTACGGATTATTGGCTTTACGAACCTGAAGAATGCAATGTTAAATGATGTGTAAGTGCGAGTGGAAATACTTCTTTACGCATTTCTAGGTTTTCTTAATTTCCGTCCAGAAGGACGTTTGTAAGAGGAAATTAATTTATTAACTTTTAATTTGTGACGATAAATCTAGAGAGTGCTGTGCTTTTAGAATTGTGTCTTGAAGAAGTCGAAATAATTTCTAATGCATACTCCTAGTTGAAAGAGAAAGAAGTCCTTGAACATTGATGTTGTTTTCGTTTTCCCGCATGGTTAATTCATTTTACCTCTTGGCCAAACTTTATAAACAGTCAGGTGACTCAAGTAGCCGAACTTGAATATCCCTCCAGGCCAACCATATATGTGTTAAGCGTAGTGAATATATGTGTTCTTCTGTAGTGCATTGAGTTGAGAGTGAATGAAGCTTACACCTTGCATGACTAGTTAATTTTGCGTATGGTATTCCTCCCTGATACTTTTTGAAACCATTTGTTTACTCTGTATATTTGCATTTTCTAATACAAATCTCCCTGCCTTGTCGGGCTTACTTTCACATGTTTATGGTCTTTGATTTGTCAATTTTTCCCCACATGATTGCAGAATTTTCCTTGCCAAGAAGTTGAAAGACATAACAAGCCGGAGGTTGAACTGACGTATGCTTATGTCTTCTACATCTTATAACTTCTTGCTGTATTTATTTTAGATTTATCATCGTTTGTGAACCACTGATGACCTGAGTTGCCTGGTTAATGATTTCATTAATAAGCTCCATGTCAATTATTCACTGAAAAACCCTCACCCTGCCTTTTGAAGTTTATTGAAAAGCAATTGAACTAGGGAACTTTAGTCTTTGCCTTTGAGATGTCTGATAGCTATTCACTTATCAATATTGTATAGAGGTATAACGTTGTGATCATTATTCTATTATTAAATCATATTTGGTTACTGCTTAGCTTTCTTGTTGGTTAGCTTATTTTAGCCAACCTCAGCTTGTATTGGTTAGTTGAATATGCTGTTGGTAGCTGGTAACAGCTACCTGTCTTGATAACTTGTATAAATACCTGCCGTGCTAATTAGCAGGCAGATAAATAATAACTATTCAGAAAGGCTGTTTATCCCATTCTCCAAGTATTATTAGTTTCTTGCTTGCATCATAATAATTGAATCTTCACATGGAAAGGAACAATGAAAATATGCTAATTTATGCCTCTTCTCCTTTTCTTGTTTTTTTCCCCTTCCAGGACCAGCTCGGAACTTCTTCTCAATCCTGTAAGATCATGTCATAAATTTAAATAATGAGTATTCCACCATTGACCATTTAGTTAGTTTAAACTATTAGTGGTGATAGTGAGAAACACCAAGCATTCATGACACCTTTGACTTTCAGACTAGAACCTAGTTATGCCTCATGATGTGTAACTGTTTTCTGTGAAGGAATTTTGAATTTCCCACAATCATACAAGAACCGCTAGGTTATGCATATGTGCAAGTGTAAAAGCAGATTTTAGCAGCTAAGAAGGGTAGTTGTATATTATTGGTTTTTGGTCAGTTTTTAACAGTCAACTATCCGTCAGGTTTGTCCAGAAGGTTTAATTTCAACTTCTCGTTGGGATTTATTTGAGGTCTAGGCCATCTTCGTCTGGGTTCTGTAGTTTTATGTTTGTGCAGTTTTATGTTGGCAATTTGAAAGGAGTAGCAGTTTTTTAGAGAACTTTGGAGAGTTTCGTTCATTAAGGAAAGGTCAAAAGGGGCGTGGCTTCTTATTGGACTGCTAGTTTAAAGTTTGTTCGCTGGGAATCCTTTCTTTACTGAAATACGTGGGAAGATATAATGTATGTTTGCGGAGTATTGTTTTTCTATTCTCCATATGCTTCTTTTTATGGTTTTTTCCCTCTTAAATTTTCATCATTATGTTTATTGTGCGTTATCCTTGGATTGGATCTTCTCCTGTAAACATTTCTTTTTTTAAATAAAAAGGGTAGGTGTAGTGTAGATGAAGGTGCTATATTTATGGTTGCAATTACAGCACAAATCTAACTTCAACCTTGAAGGCCTATGTACTGCCATTAGTCACTTTCCATCTATTCCATTACTAAGGCTAACTCCTTTTACCCTTTCTAGCTTACCTGAAGAAAATCTGCTGAACGTATGAGATATAACATCACAAATTAACTTCAACTTGTTCGCAATTATTTTATGGAACTCTTTCTTGTGCATAGGTTTAGCAGACAGATGAACTGGAGAACATCCTAACTAAAAAGTTTCTTCGATTTTTATCAACGAGGGCAGAAGCTTTCCAGGTTCTGAGAAGAAAACCTGTACAGGTAATTGACACTGTCTAATCATGAAGTTGACTTGTAGTCTGTGCTTAAATTTGAGACGATATATTCAAGAGACTCTTTATAGATTATTTATGACTATCTCGAATCATGGAGTTGTAGTAGGATAATTGTGCCTTCACAAGTTACCACGAAAATTTCATATTCCATGTCTCTTTGATGGGCGAGATTTAAATTGGCTTACCCTTGATTGAGAAAAACCTGAAAAGAGAGTTCTTTGTCATTTCTCTTATTTATCTTTGTGATGGAGAGATAAGAGACCCCAAATTCTTTTATTTAATTCTGCTTAGTAGGGGTGAAAAACCCCGAACCGAACAGGAAAACCGAACCGGAAACGGAACCGGAAAACCGAATCGAGTCGGTTCGACTCGGTTCGGTTCTCATATTTGACTTACATAGAAATTTTAGGGTTTCTCGTACCGCATTTTCTCCTCTCCCTCTCTCTCTCTTCGTCTCCTCACAAACGGTGCAAGGCGCAACTCCTCGTCTCCTCACAAACGGCGCAACTCATCTTTTTTTTTTTTTTTTTTTAGATTCTCATCTTGGCGATGGGGTTCAAGAAATTGATGGGGTACGAGAATCTCTTCGATTCATCACATGCAGCGACCCAGACCCTCCGCTTGGGTTAG

mRNA sequence

ATGGTGTTAATGGACAAAGTCGCTTCTGGATTCGAAAACGTTTTACGATTTCTTCTTAGTATTGAGATGGCTTGTGGAGGAAGCAAGCTTCCATCTGATGAGCTTCTCACTTTGTGTTTTCGGCTTTTGATTGCAACTGCTTTACGCTTGTATTTGACATGCATACGGAACAGTCTTGAAGCCGCGATTTGCCTTCAGAATTTTCCTTGCCAAGAAGTTGAAAGACATAACAAGCCGGAGGTTGAACTGACGACCAGCTCGGAACTTCTTCTCAATCCTCACAAATCTAACTTCAACCTTGAAGGCCTATGTACTGCCATTAGTCACTTTCCATCTATTCCATTACTAAGGCTAACTCCTTTTACCCTTTCTAGCTTACCTGAAGAAAATCTGCTGAACACAGATGAACTGGAGAACATCCTAACTAAAAAGTTTCTTCGATTTTTATCAACGAGGGCAGAAGCTTTCCAGGTTCTGAGAAGAAAACCTGTACAGATTCTCATCTTGGCGATGGGGTTCAAGAAATTGATGGGGTACGAGAATCTCTTCGATTCATCACATGCAGCGACCCAGACCCTCCGCTTGGGTTAG

Coding sequence (CDS)

ATGGTGTTAATGGACAAAGTCGCTTCTGGATTCGAAAACGTTTTACGATTTCTTCTTAGTATTGAGATGGCTTGTGGAGGAAGCAAGCTTCCATCTGATGAGCTTCTCACTTTGTGTTTTCGGCTTTTGATTGCAACTGCTTTACGCTTGTATTTGACATGCATACGGAACAGTCTTGAAGCCGCGATTTGCCTTCAGAATTTTCCTTGCCAAGAAGTTGAAAGACATAACAAGCCGGAGGTTGAACTGACGACCAGCTCGGAACTTCTTCTCAATCCTCACAAATCTAACTTCAACCTTGAAGGCCTATGTACTGCCATTAGTCACTTTCCATCTATTCCATTACTAAGGCTAACTCCTTTTACCCTTTCTAGCTTACCTGAAGAAAATCTGCTGAACACAGATGAACTGGAGAACATCCTAACTAAAAAGTTTCTTCGATTTTTATCAACGAGGGCAGAAGCTTTCCAGGTTCTGAGAAGAAAACCTGTACAGATTCTCATCTTGGCGATGGGGTTCAAGAAATTGATGGGGTACGAGAATCTCTTCGATTCATCACATGCAGCGACCCAGACCCTCCGCTTGGGTTAG

Protein sequence

MVLMDKVASGFENVLRFLLSIEMACGGSKLPSDELLTLCFRLLIATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGLCTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKPVQILILAMGFKKLMGYENLFDSSHAATQTLRLG

Homology

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BLAST of Lag0016512 vs. NCBI nr
Match: XP_008457157.1 (PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo])

HSP 1 Score: 139.0 bits (349), Expect = 4.2e-29
Identity = 82/122 (67.21%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +AT+LRLYLTCIRN+LEAA+CLQNFPCQEVERHNKPEVEL TSSELLLNP     N    
Sbjct: 1   MATSLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +  TDELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKP 110

Query: 164 VQ 166
           VQ
Sbjct: 121 VQ 110

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BLAST of Lag0016512 vs. NCBI nr
Match: XP_008456149.1 (PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456150.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456151.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456152.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456153.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456154.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_008456156.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_016901908.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_016901909.1 PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 5.5e-29
Identity = 82/122 (67.21%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +AT LRLYLTCIRN+LEAA+CLQNFPCQEVERHNKPEVEL TSSELLLNP     N    
Sbjct: 1   MATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +  TDELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVRQTDELENILTKKFLRFLSMRAEAFQVLRRKP 110

Query: 164 VQ 166
           VQ
Sbjct: 121 VQ 110

[Close]

BLAST of Lag0016512 vs. NCBI nr
Match: XP_011649071.1 (actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus] >XP_038907196.1 actin-related protein 2/3 complex subunit 4 isoform X1 [Benincasa hispida] >KGN61430.1 hypothetical protein Csa_006614 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 5.5e-29
Identity = 82/122 (67.21%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +AT LRLYLTCIRN+LEAA+CLQNFPCQEVERHNKPEVEL TSSELLLNP     N    
Sbjct: 1   MATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +  TDELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKP 110

Query: 164 VQ 166
           VQ
Sbjct: 121 VQ 110

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BLAST of Lag0016512 vs. NCBI nr
Match: XP_024026797.1 (actin-related protein 2/3 complex subunit 4 isoform X1 [Morus notabilis])

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-28
Identity = 85/143 (59.44%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +A  LRLYLTCIRN+LEAA+CLQNFPCQEVERHNKPEVEL TS ELLLNP     N    
Sbjct: 1   MANTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVVICRNEAEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +   DELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVKQADELENILTKKFLRFLSMRAEAFQVLRRKP 120

Query: 164 VQILILA---MGFKKLMGYENLF 184
           VQ L L+   +  +K +GY+  F
Sbjct: 121 VQCLRLSNVPLACEKTLGYDISF 131

[Close]

BLAST of Lag0016512 vs. NCBI nr
Match: ONI28744.1 (hypothetical protein PRUPE_1G158800 [Prunus persica])

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-28
Identity = 80/128 (62.50%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 38  LCFRLLIATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSN 97
           +C  ++I+  LRLYLTCIRN+L+AA+CLQNFPCQEVERHNKPEVEL TSSELLLNP    
Sbjct: 1   MCTTIIISNTLRLYLTCIRNTLDAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLIC 60

Query: 98  FNLEGLCTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQ 157
            N    C   +   SI  LR++           +   DELENILTKKFLRFLS RAEAFQ
Sbjct: 61  RNEAEKCLIET---SINSLRIS---------LKVKQADELENILTKKFLRFLSMRAEAFQ 116

Query: 158 VLRRKPVQ 166
           VLRRKPVQ
Sbjct: 121 VLRRKPVQ 116

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BLAST of Lag0016512 vs. ExPASy Swiss-Prot
Match: F4JUL9 (Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=ARPC4 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.4e-29
Identity = 77/122 (63.11%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +A +LRLYL CI+N+LEAA+CLQNFPCQEVERHNKPEVEL TS ELLLNP     N    
Sbjct: 1   MANSLRLYLACIKNTLEAAMCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +   DELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVKQADELENILTKKFLRFLSMRAEAFQVLRRKP 110

Query: 164 VQ 166
           VQ
Sbjct: 121 VQ 110

[Close]

BLAST of Lag0016512 vs. ExPASy Swiss-Prot
Match: O96625 (Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=arcD PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-17
Identity = 59/124 (47.58%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNP--HKSNFNLE 103
           ++TA   YL CIRN+L A++CLQNF  Q VERHNKPEVE+ TS EL+LNP     N N  
Sbjct: 1   MSTAQVPYLNCIRNTLTASMCLQNFGSQIVERHNKPEVEVKTSKELVLNPVIIARNKNER 60

Query: 104 GLCTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRR 163
            L        SI  +R++          ++  +DE++ IL KKF+RFL  RAE F +LRR
Sbjct: 61  VLIET-----SINSIRIS---------VSIKKSDEVDVILAKKFVRFLQQRAENFIILRR 110

Query: 164 KPVQ 166
           KPV+
Sbjct: 121 KPVE 110

[Close]

BLAST of Lag0016512 vs. ExPASy Swiss-Prot
Match: P33204 (Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ARC19 PE=1 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 9.5e-16
Identity = 57/123 (46.34%), Postives = 74/123 (60.16%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVEL-TTSSELLLNP-HKSNFNLE 103
           ++ +LR YLT +R SLEAA+ L NF  QEVERHN+PEVE+  TS+ELLL P H S    E
Sbjct: 1   MSQSLRPYLTAVRYSLEAALTLSNFSSQEVERHNRPEVEVPNTSAELLLQPMHISRNENE 60

Query: 104 GLCTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRR 163
            +       PS+  +R++           +   DE+E IL  KF RFL  RAEAF +LRR
Sbjct: 61  QVLIE----PSVNSVRMSLM---------VKQADEIEQILVHKFTRFLEQRAEAFYILRR 110

Query: 164 KPV 165
            P+
Sbjct: 121 VPI 110

[Close]

BLAST of Lag0016512 vs. ExPASy Swiss-Prot
Match: Q148J6 (Actin-related protein 2/3 complex subunit 4 OS=Bos taurus OX=9913 GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-15
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNP------HKSN 103
           +   LR YL+ +R +L+AA+CL+NF  Q VERHNKPEVE+ +S ELLL P       K  
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 104 FNLEGLCTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQ 163
             +EG         SI  +R++           +   DE+E IL  KF+RF+  RAE F 
Sbjct: 61  VLIEG---------SINSVRVS---------IAVKQADEIEKILCHKFMRFMMMRAENFF 110

Query: 164 VLRRKPVQ 166
           +LRRKPV+
Sbjct: 121 ILRRKPVE 110

[Close]

BLAST of Lag0016512 vs. ExPASy Swiss-Prot
Match: P59998 (Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens OX=9606 GN=ARPC4 PE=1 SV=3)

HSP 1 Score: 84.0 bits (206), Expect = 2.1e-15
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNP------HKSN 103
           +   LR YL+ +R +L+AA+CL+NF  Q VERHNKPEVE+ +S ELLL P       K  
Sbjct: 1   MTATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEK 60

Query: 104 FNLEGLCTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQ 163
             +EG         SI  +R++           +   DE+E IL  KF+RF+  RAE F 
Sbjct: 61  VLIEG---------SINSVRVS---------IAVKQADEIEKILCHKFMRFMMMRAENFF 110

Query: 164 VLRRKPVQ 166
           +LRRKPV+
Sbjct: 121 ILRRKPVE 110

[Close]

BLAST of Lag0016512 vs. ExPASy TrEMBL
Match: A0A1S3C5J1 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496896 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 82/122 (67.21%), Postives = 90/122 (73.77%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +AT+LRLYLTCIRN+LEAA+CLQNFPCQEVERHNKPEVEL TSSELLLNP     N    
Sbjct: 1   MATSLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +  TDELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKP 110

Query: 164 VQ 166
           VQ
Sbjct: 121 VQ 110

[Close]

BLAST of Lag0016512 vs. ExPASy TrEMBL
Match: A0A1S3C2N8 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496175 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 82/122 (67.21%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +AT LRLYLTCIRN+LEAA+CLQNFPCQEVERHNKPEVEL TSSELLLNP     N    
Sbjct: 1   MATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +  TDELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVRQTDELENILTKKFLRFLSMRAEAFQVLRRKP 110

Query: 164 VQ 166
           VQ
Sbjct: 121 VQ 110

[Close]

BLAST of Lag0016512 vs. ExPASy TrEMBL
Match: A0A0A0LHM5 (Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G120960 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 82/122 (67.21%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +AT LRLYLTCIRN+LEAA+CLQNFPCQEVERHNKPEVEL TSSELLLNP     N    
Sbjct: 1   MATTLRLYLTCIRNTLEAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPILICRNESEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +  TDELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVKQTDELENILTKKFLRFLSMRAEAFQVLRRKP 110

Query: 164 VQ 166
           VQ
Sbjct: 121 VQ 110

[Close]

BLAST of Lag0016512 vs. ExPASy TrEMBL
Match: A0A4D8YVE3 (Actin-related protein 2/3 complex subunit 4 OS=Salvia splendens OX=180675 GN=ARPC4 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.6e-29
Identity = 83/132 (62.88%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 44  IATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSNFNLEGL 103
           +A +LRLYLTCIRN+LEAA+CLQNFPCQEVERHNKPEVEL TS ELLLNP     N    
Sbjct: 1   MANSLRLYLTCIRNTLEAALCLQNFPCQEVERHNKPEVELKTSPELLLNPVLICRNEAEK 60

Query: 104 CTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQVLRRKP 163
           C   +   SI  LR++           +   DELENILTKKFLRFLS RAEAFQVLRRKP
Sbjct: 61  CLIET---SINSLRIS---------LKVKQADELENILTKKFLRFLSMRAEAFQVLRRKP 120

Query: 164 VQILILAMGFKK 176
           VQ  I A  F K
Sbjct: 121 VQFFIKAQWFDK 120

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BLAST of Lag0016512 vs. ExPASy TrEMBL
Match: A0A251QY61 (Actin-related protein 2/3 complex subunit 4 OS=Prunus persica OX=3760 GN=PRUPE_1G158800 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 80/128 (62.50%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 38  LCFRLLIATALRLYLTCIRNSLEAAICLQNFPCQEVERHNKPEVELTTSSELLLNPHKSN 97
           +C  ++I+  LRLYLTCIRN+L+AA+CLQNFPCQEVERHNKPEVEL TSSELLLNP    
Sbjct: 1   MCTTIIISNTLRLYLTCIRNTLDAAMCLQNFPCQEVERHNKPEVELKTSSELLLNPVLIC 60

Query: 98  FNLEGLCTAISHFPSIPLLRLTPFTLSSLPEENLLNTDELENILTKKFLRFLSTRAEAFQ 157
            N    C   +   SI  LR++           +   DELENILTKKFLRFLS RAEAFQ
Sbjct: 61  RNEAEKCLIET---SINSLRIS---------LKVKQADELENILTKKFLRFLSMRAEAFQ 116

Query: 158 VLRRKPVQ 166
           VLRRKPVQ
Sbjct: 121 VLRRKPVQ 116

The following BLAST results are available for this feature:

BLAST of Lag0016512 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457157.1	4.2e-29	67.21	PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis melo]	[more]
XP_008456149.1	5.5e-29	67.21	PREDICTED: actin-related protein 2/3 complex subunit 4-like [Cucumis melo] >XP_0...	[more]
XP_011649071.1	5.5e-29	67.21	actin-related protein 2/3 complex subunit 4 isoform X1 [Cucumis sativus] >XP_038...	[more]
XP_024026797.1	1.6e-28	59.44	actin-related protein 2/3 complex subunit 4 isoform X1 [Morus notabilis]	[more]
ONI28744.1	2.1e-28	62.50	hypothetical protein PRUPE_1G158800 [Prunus persica]	[more]

BLAST of Lag0016512 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JUL9	3.4e-29	63.11	Actin-related protein 2/3 complex subunit 4 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
O96625	2.3e-17	47.58	Actin-related protein 2/3 complex subunit 4 OS=Dictyostelium discoideum OX=44689...	[more]
P33204	9.5e-16	46.34	Actin-related protein 2/3 complex subunit 4 OS=Saccharomyces cerevisiae (strain ...	[more]
Q148J6	2.1e-15	42.19	Actin-related protein 2/3 complex subunit 4 OS=Bos taurus OX=9913 GN=ARPC4 PE=1 ...	[more]
P59998	2.1e-15	42.19	Actin-related protein 2/3 complex subunit 4 OS=Homo sapiens OX=9606 GN=ARPC4 PE=...	[more]

BLAST of Lag0016512 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5J1	2.1e-29	67.21	Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A1S3C2N8	2.7e-29	67.21	Actin-related protein 2/3 complex subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A0A0LHM5	2.7e-29	67.21	Actin-related protein 2/3 complex subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]
A0A4D8YVE3	4.6e-29	62.88	Actin-related protein 2/3 complex subunit 4 OS=Salvia splendens OX=180675 GN=ARP...	[more]
A0A251QY61	1.0e-28	62.50	Actin-related protein 2/3 complex subunit 4 OS=Prunus persica OX=3760 GN=PRUPE_1...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008384	Actin-related protein 2/3 complex subunit 4	PFAM	PF05856	ARPC4	coord: 45..166 e-value: 5.2E-24 score: 84.8
IPR008384	Actin-related protein 2/3 complex subunit 4	PANTHER	PTHR22629	ARP2/3 COMPLEX 20 KD SUBUNIT	coord: 45..165
IPR034666	Arp2/3 complex subunit 2/4	GENE3D	3.30.1460.20		coord: 44..187 e-value: 1.3E-27 score: 98.3
IPR034666	Arp2/3 complex subunit 2/4	SUPERFAMILY	69645	Arp2/3 complex subunits	coord: 47..165
None	No IPR available	PANTHER	PTHR22629:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 4	coord: 45..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016512.1	Lag0016512.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
biological_process	GO:0030041	actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0051015	actin filament binding