Lag0016511 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016511
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	CCHC-type domain-containing protein
Location	chr12: 38500080 .. 38500382 (-)
RNA-Seq Expression	Lag0016511
Synteny	Lag0016511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTCGACCCAATACTGAGACTTCGTGTTCGTTTGAACTTGAAATGTCCTTTGTGGCGGAGCTTCAAACTCCAAACCAGTAATGAAGAGGAGGTTTGGTGCCCAGTTATTTATGAAAGGCTGCCAGATTTTTGCTATAGTTGTGGGCGGCTTGGCCATGCAAGGAAGGAGTGTGTGCATGATGTGGGAGAGGGGGTGCAAATGGGTCAGGAGCAATATGGCGAGTGGATGCGAACGGGGACGGTGTTGGGGGATGTGGGGAGACAGGGCCTGAATTCGAATGAGAAGAAGGAAGGCTAG

mRNA sequence

ATGTGGGTCGACCCAATACTGAGACTTCGTGTTCGTTTGAACTTGAAATGTCCTTTGTGGCGGAGCTTCAAACTCCAAACCAGTAATGAAGAGGAGGTTTGGTGCCCAGTTATTTATGAAAGGCTGCCAGATTTTTGCTATAGTTGTGGGCGGCTTGGCCATGCAAGGAAGGAGTGTGTGCATGATGTGGGAGAGGGGGTGCAAATGGGTCAGGAGCAATATGGCGAGTGGATGCGAACGGGGACGGTGTTGGGGGATGTGGGGAGACAGGGCCTGAATTCGAATGAGAAGAAGGAAGGCTAG

Coding sequence (CDS)

ATGTGGGTCGACCCAATACTGAGACTTCGTGTTCGTTTGAACTTGAAATGTCCTTTGTGGCGGAGCTTCAAACTCCAAACCAGTAATGAAGAGGAGGTTTGGTGCCCAGTTATTTATGAAAGGCTGCCAGATTTTTGCTATAGTTGTGGGCGGCTTGGCCATGCAAGGAAGGAGTGTGTGCATGATGTGGGAGAGGGGGTGCAAATGGGTCAGGAGCAATATGGCGAGTGGATGCGAACGGGGACGGTGTTGGGGGATGTGGGGAGACAGGGCCTGAATTCGAATGAGAAGAAGGAAGGCTAG

Protein sequence

MWVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEGVQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG

Homology

[Close]

BLAST of Lag0016511 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 2   WVDPILRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVH 61
           W  P +R+RV++++  PL R  KL+ S+ +++WCP+ YE+LPDFCY CG++GH+ +EC  
Sbjct: 163 WAGPFIRVRVKIDVSKPLRRGIKLKNSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQ 222

Query: 62  DVGEGVQMGQEQYGEWMR 80
                     EQYG+W+R
Sbjct: 223 RSKVVTTNSPEQYGDWLR 240

[Close]

BLAST of Lag0016511 vs. NCBI nr
Match: KAF5469007.1 (hypothetical protein F2P56_013112 [Juglans regia])

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-12
Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 7   LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEG 66
           +R+RV L++  PL R  KL+  +E   W  ++YERLPDFCY CG LGH+ +EC   +   
Sbjct: 169 MRVRVLLDISTPLQRRKKLKLGDENYCWVRLVYERLPDFCYQCGLLGHSLRECAEFISVN 228

Query: 67  VQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG 101
            ++ Q  YG W+R G      G Q       KEG
Sbjct: 229 AEIDQLPYGAWLRAGFSSPKRGWQVGAGARSKEG 262

[Close]

BLAST of Lag0016511 vs. NCBI nr
Match: XP_035546641.1 (uncharacterized protein LOC108984200 [Juglans regia])

HSP 1 Score: 80.5 bits (197), Expect = 9.1e-12
Identity = 38/94 (40.43%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 7   LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEG 66
           +R+RV L++  PL R  KL+  +E   W  ++YERLPDFCY CG LGH+ +EC   +   
Sbjct: 169 MRVRVLLDISTPLQRRKKLKLGDENYCWVRLVYERLPDFCYQCGLLGHSLRECAEFISVN 228

Query: 67  VQMGQEQYGEWMRTGTVLGDVGRQGLNSNEKKEG 101
            ++ Q  YG W+R G      G Q       KEG
Sbjct: 229 AEIDQLPYGAWLRAGFSSPKRGWQVGAGARSKEG 262

[Close]

BLAST of Lag0016511 vs. NCBI nr
Match: OMO52400.1 (hypothetical protein COLO4_37225 [Corchorus olitorius])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 7   LRLRVRLNLKCPLWRSFKLQTSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVHDVGEG 66
           LRLRV ++++ PL   F     N  +VW  + YE+L DFCY CG+LGH  K C  DV  G
Sbjct: 154 LRLRVAMDIEKPLLGGFWFPRKNGHKVWAEIRYEKLGDFCYRCGKLGHIEKVCEKDVIAG 213

Query: 67  VQMGQEQYGEWMRTGTV 84
            +  ++QYG WMRTG +
Sbjct: 214 TE--RKQYGPWMRTGMI 228

[Close]

BLAST of Lag0016511 vs. NCBI nr
Match: OQU92454.1 (hypothetical protein SORBI_3001G347001 [Sorghum bicolor])

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 3   VDPILRLRVRLNLKCPLWRSFKLQ-TSNEEEVWCPVIYERLPDFCYSCGRLGHARKECVH 62
           V   LR++V+++++ PL R   L+    E++ WCP+ YE LP+FCY CG LGH  KEC  
Sbjct: 29  VGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYLPNFCYGCGLLGHVEKECDS 88

Query: 63  DVGEGVQMGQEQYGEWMR 80
            V E  ++G +Q+G+W+R
Sbjct: 89  CVEE--EVGFKQFGDWLR 104

The following BLAST results are available for this feature:

BLAST of Lag0016511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149484.1	3.0e-15	43.59	uncharacterized protein LOC111017902 [Momordica charantia]	[more]
KAF5469007.1	9.1e-12	40.43	hypothetical protein F2P56_013112 [Juglans regia]	[more]
XP_035546641.1	9.1e-12	40.43	uncharacterized protein LOC108984200 [Juglans regia]	[more]
OMO52400.1	1.6e-11	46.75	hypothetical protein COLO4_37225 [Corchorus olitorius]	[more]
OQU92454.1	2.0e-11	43.59	hypothetical protein SORBI_3001G347001 [Sorghum bicolor]	[more]

BLAST of Lag0016511 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 18..59 e-value: 2.0E-13 score: 49.8
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 46..59 score: 9.850513

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016511.1	Lag0016511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding