Lag0016502 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016502
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Locationchr12: 38427516 .. 38428660 (+)
RNA-Seq ExpressionLag0016502
SyntenyLag0016502
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCGTGGGAGACCTCGGAGGATAAGCTAAAGGACTACTTTAGCAACTATGGTGAAGTGATGCATACCGTTGTTATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGCTTCGTCGTCTTTGCAGATCCCTCTGTCCTCGATCGAGTTCTCCAGGATAAGCACACTATCGATGGTAAAACGGTGCGTGAGAATCGTGTTTCTCTTTTCTTCATTCGATGTGCGGTTCTGGCCTTTTTTTGGTTTTTGATAATTAGCATGTGGGTTCGTTTGATTTGGCCTCTTTTTTAACGATTACTGTCGTGGGTGGATGCCTCATTCGAGTTGTTGGGGTTTTTGATTCCACAATGGCACTAAATAGTTCTCTTTTGTGTGTCACATGTCTGATGTTTGTTGGTTTTTTAGGGTAGCTCGTATTGATGCATCTGCACTTCTTGTTATTGAGCTTTTGGTTCGTGTGTTGTCTTTTCTGCGTAGTGTAGTTTTTGGTGTAACATTTGTTGGTTTGTTGCATTATTTATTCACTAGGGGAGGCATTGATAAAAGGGTCGGTTGTTTTCTGCCATTTCATTTCAACGTAGTTTATGTTTTTCACTATGATCTACTTGAACAATTTGTATTTCATATGGTTGTATCTTCCCTCTTGATAGTTAATTCTAGAGTGTGAACTTGGTGCGTCGGAAATGAGTTGGTATAAATCTGTTGACTTCAACTGTGAAGTGCTGTCTCAAGTCTTCTTTGGTTAACATTACTTTTTTGGAGATGAAATTTTACTAGTTCATTAGTATAACCGTTACTTGTAATCTGTGTTTTTGTTTTAAGGGTAGTGGTTATACCGTTGCTGTAACTTTCCCCCTCTTTTTTATTATCATCTCTTCTGGAAATATTTTTACCTTTCTGTCGAGTCATGTTTTTTTGGAGAACTTTTTAGCATTTGTAATTTATATTCTTTTTAGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAGGCAATTCTAATGCTACTAGAAATTCTGGTGGTGGTGGTGGTGGAGGAAATATGAGAACCAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTGA

mRNA sequence

ATGGACTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCGTGGGAGACCTCGGAGGATAAGCTAAAGGACTACTTTAGCAACTATGGTGAAGTGATGCATACCGTTGTTATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGCTTCGTCGTCTTTGCAGATCCCTCTGTCCTCGATCGAGTTCTCCAGGATAAGCACACTATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAGGCAATTCTAATGCTACTAGAAATTCTGGTGGTGGTGGTGGTGGAGGAAATATGAGAACCAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTGA

Coding sequence (CDS)

ATGGACTCGGATCAGGGGAAGCTTTTTATTGGTGGGATTTCGTGGGAGACCTCGGAGGATAAGCTAAAGGACTACTTTAGCAACTATGGTGAAGTGATGCATACCGTTGTTATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGCTTCGTCGTCTTTGCAGATCCCTCTGTCCTCGATCGAGTTCTCCAGGATAAGCACACTATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAGGCAATTCTAATGCTACTAGAAATTCTGGTGGTGGTGGTGGTGGAGGAAATATGAGAACCAAAAAATTTTTGTTGGGGGATTGCCTCCAACATTGA

Protein sequence

MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNSGGGGGGGNMRTKKFLLGDCLQH
Homology
[Close]
BLAST of Lag0016502 vs. NCBI nr
Match: XP_022959237.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata])

HSP 1 Score: 228.0 bits (580), Expect = 4.4e-56
Identity = 113/118 (95.76%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNSGGGGGGGNMRTKKFLLG 119
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRNSGGGGGGGNMRTKK  +G
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGNMRTKKIFVG 118

[Close]
BLAST of Lag0016502 vs. NCBI nr
Match: KAG7013472.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNS--GGGGGGGNMRTKKFLLG 119
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRNS  GGGGGGGNMRTKK  +G
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120

[Close]
BLAST of Lag0016502 vs. NCBI nr
Match: KAG6574899.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNS--GGGGGGGNMRTKKFLLG 119
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRNS  GGGGGGGNMRTKK  +G
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGNMRTKKIFVG 120

[Close]
BLAST of Lag0016502 vs. NCBI nr
Match: XP_023006071.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 221.9 bits (564), Expect = 3.1e-54
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 0 

Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNSGGGGGGGNMRTKKFLLG 119
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRNS GGGGGGNMRTKK  +G
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNS-GGGGGGNMRTKKIFVG 117

[Close]
BLAST of Lag0016502 vs. NCBI nr
Match: XP_023548146.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.5 bits (563), Expect = 4.1e-54
Identity = 113/124 (91.13%), Postives = 115/124 (92.74%), Query Frame = 0 

Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVL 60
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVF+DPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNS------GGGGGGGNMRTKK 119
           DRVLQDKHTIDGKTVEAKRALSREEQQTPARA NSNATRNS      GGGGGGGNMRTKK
Sbjct: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNATRNSGGGGGGGGGGGGGNMRTKK 120

[Close]
BLAST of Lag0016502 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-38
Identity = 77/118 (65.25%), Postives = 95/118 (80.51%), Query Frame = 0 

Query: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVL 60
           MDSDQGKLF+GGISWET EDKL+++F+NYGEV   +VMRDK+T RPRGFGFV+F+DPSVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRVLQDKHTIDGKTVEAKRALSREEQQTPARAGNSNATRNSGGGGGGGNMRTKKFLLG 119
           DRVLQ+KH+ID + V+ KRA+SREEQQ   R GN N +R+SGG       +TKK  +G
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYN---KTKKIFVG 115

[Close]
BLAST of Lag0016502 vs. ExPASy Swiss-Prot
Match: O94432 (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-22
Identity = 43/88 (48.86%), Postives = 64/88 (72.73%), Query Frame = 0 

Query: 4   DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRV 63
           + GK+FIGG++WET++D L+DYF  +GEV+   VMRD  T R RGFGF+ F +P  ++ V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220

Query: 64  LQDKHTIDGKTVEAKRALSREEQQTPAR 92
           +  +H +DGK ++ KRA+ REEQ+  A+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQEKTAK 248

[Close]
BLAST of Lag0016502 vs. ExPASy Swiss-Prot
Match: Q96DH6 (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.7e-21
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 4   DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRV 63
           D GK+FIGG+SW+TS D L+DYFS +GE+   +VMRD  T R RGFGFV FADP+ +D+V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 64  L-QDKHTIDGKTVEAKRALSREEQ 87
           L Q  H +D KT++ K A  R  Q
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQ 102

[Close]
BLAST of Lag0016502 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.7e-21
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 4   DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRV 63
           D GK+FIGG+SW+TS D L+DYFS +GE+   +VMRD  T R RGFGFV FADP+ +D+V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 64  L-QDKHTIDGKTVEAKRALSREEQ 87
           L Q  H +D KT++ K A  R  Q
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQ 102

[Close]
BLAST of Lag0016502 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 3   SDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDR 62
           +D GK+FIGG+SW+TS + L+DYF  YG++   +VM+D  T R RGFGFV F+DP+ +D+
Sbjct: 26  NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85

Query: 63  VL-QDKHTIDGKTVEAKRALSR 84
           VL Q  H +DGK V+ K A  R
Sbjct: 86  VLTQGTHELDGKKVDPKVAFPR 107

The following BLAST results are available for this feature:
BLAST of Lag0016502 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022959237.14.4e-5695.76heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata][more]
KAG7013472.11.4e-5494.17Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp... [more]
KAG6574899.11.4e-5494.17Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp... [more]
XP_023006071.13.1e-5494.92heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima][more]
XP_023548146.14.1e-5491.13heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo][more]
BLAST of Lag0016502 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8W0341.1e-3865.25Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
O944325.6e-2248.86Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain... [more]
Q96DH64.7e-2155.95RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1[more]
Q920Q64.7e-2155.95RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1[more]
Q9VVE51.5e-1952.44RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 7..78
e-value: 5.6E-20
score: 82.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 8..75
e-value: 3.7E-16
score: 58.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 6..82
score: 16.721853
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..114
e-value: 1.2E-25
score: 92.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..105
NoneNo IPR availablePANTHERPTHR48035:SF1SUBFAMILY NOT NAMEDcoord: 1..118
NoneNo IPR availablePANTHERPTHR48035HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1coord: 1..118
NoneNo IPR availableCDDcd12325RRM1_hnRNPA_hnRNPD_likecoord: 8..78
e-value: 2.09779E-39
score: 124.62
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016502.1Lag0016502.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding