Lag0016500 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016500
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionActin-related protein 2/3 complex subunit 2
Locationchr12: 38419464 .. 38420923 (+)
RNA-Seq ExpressionLag0016500
SyntenyLag0016500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGAATAGGCATTTTGGTTCTTTAGGGTTCGAGAAGGTTGGGAACGACGTCAATGGAGACGGCGATAGTGAATCGATTGCTTTGATATTGCCATCTCTTCGAGGTGGGCTTTCAAGGAAACTGGAAAAACCGAGGCGAAAAGTGCAGTGGAATGATAACAATGGAGGAAAGTTAACGGAGGTAGTGGTGTTTGAACCAAGGTAATGTGATCTCTCTGTTCTTGTAATTTGGAAAATAAAGCAAAGAAGAAGGTCTAATTTGCAATTATCTGTATTCCAAGTTCCTTTTGCCAAATCTTGCATACCATACCAGTATAGAAAATGGAAGGTTAAATTAAAGTTTAGTACCTTAACTTTCAGATTTGTGTCTATTTAGTTCTTTAGCTCAAAGATAATATAATAAATCCTCGAACTTATTTTGTGTCTAGTTATTGAACTTAAAAAATGTCTGATAGGCCCTGTTTTAATTTGTATCTAATCCACTAGATTTGTGTCTGTTTTAATGTCTAATAATCCACCAGATATAACTTAAAAGATGAAAGTTGGGAGACATGTTGGGCACCAAAGTTAAGTTTTACGCCTTTTTTTTTTTTTTTTTTTTTTGAAAGTTATGCTTATAAACACTACTTCTACTCACAAGTTTTCTTATTTTGTTATCTATTTTCTTCCTATGTTTTCAAAAACCAAGTCAAGTTTTAAGTAGAAAAACATTTTTTGGAATTTGGTTAAGAATGCAAATGTGTCATTTTCAAAGAAAAAAATATTGGAAGAAAAGAAGCATAATTTTCAAAAACAAAAAACCAAAAACCAAATGGGTTATCAAACGGATCTCAGTAATCATGCTTTTTAAAATTGAAAGCTCGGGACCTATACAAGAAAATTTAGAGACTAAATTTGTAATTTAAGCAAAGTTGAATGATTTATTGTTCTAAGTTAGAATTAGACTTAGCTCAAAGAGAGCAAATATTTGTTGATTCACTTCATTTCCCATGTTTGTGGGTGCAGTTCTGTAAGCGATTCGGAAGATGAGGCATCAGATGCGTGTATGTGTATGTGTGCTTTAATGTAAATCAAGTACTTAAGAGTGATTATTTTGGATTAGGTTTGTTGATATCTAGCGATTAGCTAGCTTCCTTTGGAAATTAAATTAAAGCAGATAATAGAATGATCCTGTTCTTGTTTTCTGTGTGATATCTGTAAATATAGAGCTGTTGATTCATTTCTACAATGTAGAAACTGTCTGGTAATATAGTAATATGCTCATACTACAAGACTGGTTTTTTTCTTTGGTATCTTGTTAAATCTGCTGCACAACTTGAAAGACTGACGAAGCTACCAGCGACAGCGAAACGCCCACCGGAAAACACAAAGCAAGACTCTAAAATTCCTGTCTATGTAAAGATATCTGTATTCACCCCCTTCAAATCTTTGACAACTAAAAAAGAAAAAGGTTGA

mRNA sequence

ATGGCTGTGAATAGGCATTTTGGTTCTTTAGGGTTCGAGAAGGTTGGGAACGACGTCAATGGAGACGGCGATAGTGAATCGATTGCTTTGATATTGCCATCTCTTCGAGGTGGGCTTTCAAGGAAACTGGAAAAACCGAGGCGAAAAGTGCAGTGGAATGATAACAATGGAGGAAAGTTAACGGAGGTAGTGGTGTTTGAACCAAGTTCTGTAAGCGATTCGGAAGATGAGGCATCAGATGCGTTAATATGCTCATACTACAAGACTGGTTTTTTTCTTTGGTATCTTGTTAAATCTGCTGCACAACTTGAAAGACTGACGAAGCTACCAGCGACAGCGAAACGCCCACCGGAAAACACAAAGCAAGACTCTAAAATTCCTGTCTATGTAAAGATATCTGTATTCACCCCCTTCAAATCTTTGACAACTAAAAAAGAAAAAGGTTGA

Coding sequence (CDS)

ATGGCTGTGAATAGGCATTTTGGTTCTTTAGGGTTCGAGAAGGTTGGGAACGACGTCAATGGAGACGGCGATAGTGAATCGATTGCTTTGATATTGCCATCTCTTCGAGGTGGGCTTTCAAGGAAACTGGAAAAACCGAGGCGAAAAGTGCAGTGGAATGATAACAATGGAGGAAAGTTAACGGAGGTAGTGGTGTTTGAACCAAGTTCTGTAAGCGATTCGGAAGATGAGGCATCAGATGCGTTAATATGCTCATACTACAAGACTGGTTTTTTTCTTTGGTATCTTGTTAAATCTGCTGCACAACTTGAAAGACTGACGAAGCTACCAGCGACAGCGAAACGCCCACCGGAAAACACAAAGCAAGACTCTAAAATTCCTGTCTATGTAAAGATATCTGTATTCACCCCCTTCAAATCTTTGACAACTAAAAAAGAAAAAGGTTGA

Protein sequence

MAVNRHFGSLGFEKVGNDVNGDGDSESIALILPSLRGGLSRKLEKPRRKVQWNDNNGGKLTEVVVFEPSSVSDSEDEASDALICSYYKTGFFLWYLVKSAAQLERLTKLPATAKRPPENTKQDSKIPVYVKISVFTPFKSLTTKKEKG
Homology
[Close]
BLAST of Lag0016500 vs. NCBI nr
Match: XP_022138680.1 (uncharacterized protein LOC111009782 [Momordica charantia] >XP_022138681.1 uncharacterized protein LOC111009782 [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-23
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 0 

Query: 1  MAVNRHFGSLGFEKVGNDVNGDGDSESIALILPSLRGGLSRKLEKPRRKVQWNDNNGGKL 60
          MAVNRHFGS+G EKV + VNGD + ES+AL LP  RGG+S+KL+KPRRKVQWNDNNG KL
Sbjct: 1  MAVNRHFGSVGSEKVEDHVNGDSNVESMAL-LPPRRGGISKKLDKPRRKVQWNDNNGRKL 60

Query: 61 TEVVVFEPSSVSDSEDEASDALICS 86
          TEV+VFE S  SDSED+ SDA +C+
Sbjct: 61 TEVMVFEXSYESDSEDDESDACMCT 84

[Close]
BLAST of Lag0016500 vs. NCBI nr
Match: XP_020226457.1 (uncharacterized protein LOC109808052 isoform X2 [Cajanus cajan])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-16
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 9  SLGFEKVGNDVNGDGDSESIALILPSLRGGLSRKLEKPRRKVQWNDNNGGKLTEVVVFEP 68
          SLG EKV + VNG+ DS+S AL LP  RGG+SR  +K RRKVQWND NG KL EV+ +EP
Sbjct: 20 SLGGEKVEDHVNGEDDSDSNAL-LPPRRGGMSRNCDKTRRKVQWNDRNGNKLAEVLEYEP 79

Query: 69 SSVSDSEDEASDALICS 86
          S VSDSEDE SD+ IC+
Sbjct: 80 SDVSDSEDEDSDSCICT 95

[Close]
BLAST of Lag0016500 vs. NCBI nr
Match: XP_007145827.1 (hypothetical protein PHAVU_007G271300g [Phaseolus vulgaris] >ESW17821.1 hypothetical protein PHAVU_007G271300g [Phaseolus vulgaris])

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-16
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 9  SLGFEKVGNDVNGDGDSESIALILPSLRGGLSRKLEKPRRKVQWNDNNGGKLTEVVVFEP 68
          +LG EKV + VNGD +S+S +L LP  RGG+SR  +K RRKVQWND NG KL EV+ +EP
Sbjct: 22 TLGSEKVEDHVNGDDESDSNSL-LPPRRGGMSRNSDKTRRKVQWNDRNGNKLAEVLEYEP 81

Query: 69 SSVSDSEDEASDALICS 86
          S VSDSEDE SD+ IC+
Sbjct: 82 SDVSDSEDEDSDSCICT 97

[Close]
BLAST of Lag0016500 vs. NCBI nr
Match: XP_027938019.1 (uncharacterized protein LOC114192484 [Vigna unguiculata])

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-16
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 9  SLGFEKVGNDVNGDGDSESIALILPSLRGGLSRKLEKPRRKVQWNDNNGGKLTEVVVFEP 68
          SL  EKV + VNGD DS+S +L LP  RGG+SR  +K RRKVQWND NG KL EV+ +EP
Sbjct: 21 SLRSEKVEDHVNGDDDSDSNSL-LPPRRGGMSRNCDKTRRKVQWNDRNGNKLAEVLEYEP 80

Query: 69 SSVSDSEDEASDALICS 86
          S VSDSEDE SD+ IC+
Sbjct: 81 SDVSDSEDEDSDSCICT 96

[Close]
BLAST of Lag0016500 vs. NCBI nr
Match: KAG4983251.1 (hypothetical protein JHK87_028000 [Glycine soja] >KAG4997312.1 hypothetical protein JHK85_028751 [Glycine max] >KAG5127251.1 hypothetical protein JHK82_028086 [Glycine max] >KAG5151865.1 hypothetical protein JHK84_028337 [Glycine max] >KHN48466.1 hypothetical protein glysoja_044611 [Glycine soja])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 9  SLGFEKVGNDVNGDGDSESIALILPSLRGGLSRKLEKPRRKVQWNDNNGGKLTEVVVFEP 68
          SL  EKV + VNG+ DS+S +L LP  RGG+SR  EK RRKVQWND NG KL EV+ +EP
Sbjct: 21 SLVCEKVEDHVNGEDDSDSNSL-LPPRRGGMSRNCEKTRRKVQWNDRNGNKLAEVLEYEP 80

Query: 69 SSVSDSEDEASDALICS 86
          S VSDSEDE SD+ IC+
Sbjct: 81 SDVSDSEDEDSDSCICA 96

The following BLAST results are available for this feature:
BLAST of Lag0016500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022138680.12.0e-2370.59uncharacterized protein LOC111009782 [Momordica charantia] >XP_022138681.1 uncha... [more]
XP_020226457.11.4e-1664.94uncharacterized protein LOC109808052 isoform X2 [Cajanus cajan][more]
XP_007145827.16.9e-1662.34hypothetical protein PHAVU_007G271300g [Phaseolus vulgaris] >ESW17821.1 hypothet... [more]
XP_027938019.16.9e-1663.64uncharacterized protein LOC114192484 [Vigna unguiculata][more]
KAG4983251.11.2e-1563.64hypothetical protein JHK87_028000 [Glycine soja] >KAG4997312.1 hypothetical prot... [more]
BLAST of Lag0016500 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33401:SF2OS03G0138400 PROTEINcoord: 19..85
NoneNo IPR availablePANTHERPTHR33401LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTICcoord: 19..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016500.1Lag0016500.1mRNA