Lag0016485 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016485
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AWPM-19-like protein
Location	chr12: 38324234 .. 38324734 (-)
RNA-Seq Expression	Lag0016485
Synteny	Lag0016485

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAACGGAGCTACGCCGTTCTTCTTGACGTTTGCAATGCTGACGGCAGTTCTGGGAGTGGCGTCGAAACTCGCCGGACTCTACCATATTAGAGCTTGGCGGAGCGACAGCCTCGCCGGCGCCGGCTCCGCTTCATTGATCACTTGGGCTGTAACTGTTCTAGCTTTTGGGTAACTTTCTATCTCTATCACTTCAAATTTCACACATTTCTCTTCAACAAACTCAAGCCATTGGCCTTCTTTCTTTTTCCCTTTCCACAGCTTGGCCTGCAAGCAAATCAGCATAGGAGGCCACAGAGGGTGGAGGCTGAGAGTGGTGGAAGCTTTCATAATAATACTGACTTTCACTCAGCTTCTCTACCTGCTCTTGCTCCACGCCGGAATCTTCAGCCGCCGTTACGGCCCCGGTTATTGGGACACCGACTACGGCATGGGCGGGGGAACGGCTGCCCCTGGTGAGCCTCCCAAGGGGACTGCCGGGACCAGGGTGGTTTAG

mRNA sequence

ATGGGAGGCAACGGAGCTACGCCGTTCTTCTTGACGTTTGCAATGCTGACGGCAGTTCTGGGAGTGGCGTCGAAACTCGCCGGACTCTACCATATTAGAGCTTGGCGGAGCGACAGCCTCGCCGGCGCCGGCTCCGCTTCATTGATCACTTGGGCTGTAACTGTTCTAGCTTTTGGCTTGGCCTGCAAGCAAATCAGCATAGGAGGCCACAGAGGGTGGAGGCTGAGAGTGGTGGAAGCTTTCATAATAATACTGACTTTCACTCAGCTTCTCTACCTGCTCTTGCTCCACGCCGGAATCTTCAGCCGCCGTTACGGCCCCGGTTATTGGGACACCGACTACGGCATGGGCGGGGGAACGGCTGCCCCTGGTGAGCCTCCCAAGGGGACTGCCGGGACCAGGGTGGTTTAG

Coding sequence (CDS)

ATGGGAGGCAACGGAGCTACGCCGTTCTTCTTGACGTTTGCAATGCTGACGGCAGTTCTGGGAGTGGCGTCGAAACTCGCCGGACTCTACCATATTAGAGCTTGGCGGAGCGACAGCCTCGCCGGCGCCGGCTCCGCTTCATTGATCACTTGGGCTGTAACTGTTCTAGCTTTTGGCTTGGCCTGCAAGCAAATCAGCATAGGAGGCCACAGAGGGTGGAGGCTGAGAGTGGTGGAAGCTTTCATAATAATACTGACTTTCACTCAGCTTCTCTACCTGCTCTTGCTCCACGCCGGAATCTTCAGCCGCCGTTACGGCCCCGGTTATTGGGACACCGACTACGGCATGGGCGGGGGAACGGCTGCCCCTGGTGAGCCTCCCAAGGGGACTGCCGGGACCAGGGTGGTTTAG

Protein sequence

MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGSASLITWAVTVLAFGLACKQISIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGTAAPGEPPKGTAGTRVV

Homology

[Close]

BLAST of Lag0016485 vs. NCBI nr
Match: XP_038874443.1 (membrane protein PM19L [Benincasa hispida] >XP_038874444.1 membrane protein PM19L [Benincasa hispida])

HSP 1 Score: 267.7 bits (683), Expect = 5.5e-68
Identity = 133/136 (97.79%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGSASLITWAVTVLAFGL 60
           MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGS SL+TWAVTVLAFGL
Sbjct: 45  MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGSTSLLTWAVTVLAFGL 104

Query: 61  ACKQISIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 120
           ACKQI+IGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT
Sbjct: 105 ACKQINIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 164

Query: 121 AAPGEPPKGTAGTRVV 137
           AAPGEPPKGTAGTRVV
Sbjct: 165 AAPGEPPKGTAGTRVV 180

[Close]

BLAST of Lag0016485 vs. NCBI nr
Match: XP_008460698.1 (PREDICTED: uncharacterized protein LOC103499466 [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 7.2e-68
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGSASLITWAVTVLAFGL 60
           MGGNGATPFFLTFAMLTAVLG+ASKLAGLYHIRAWRSDSLAGAGS SL+TWAVTVLAFGL
Sbjct: 45  MGGNGATPFFLTFAMLTAVLGIASKLAGLYHIRAWRSDSLAGAGSTSLLTWAVTVLAFGL 104

Query: 61  ACKQISIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 120
           ACKQI+IGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT
Sbjct: 105 ACKQINIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 164

Query: 121 AAPGEPPKGTAGTRVV 137
           AAPGEPPKGTAGTRVV
Sbjct: 165 AAPGEPPKGTAGTRVV 180

[Close]

BLAST of Lag0016485 vs. NCBI nr
Match: KAA0031944.1 (AWPM-19-like protein [Cucumis melo var. makuwa] >TYK16765.1 AWPM-19-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 267.3 bits (682), Expect = 7.2e-68
Identity = 132/136 (97.06%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGSASLITWAVTVLAFGL 60
           MGGNGATPFFLTFAMLTAVLG+ASKLAGLYHIRAWRSDSLAGAGS SL+TWAVTVLAFGL
Sbjct: 1   MGGNGATPFFLTFAMLTAVLGIASKLAGLYHIRAWRSDSLAGAGSTSLLTWAVTVLAFGL 60

Query: 61  ACKQISIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 120
           ACKQI+IGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT
Sbjct: 61  ACKQINIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 120

Query: 121 AAPGEPPKGTAGTRVV 137
           AAPGEPPKGTAGTRVV
Sbjct: 121 AAPGEPPKGTAGTRVV 136

[Close]

BLAST of Lag0016485 vs. NCBI nr
Match: XP_004147191.1 (membrane protein PM19L [Cucumis sativus] >KGN61555.1 hypothetical protein Csa_006579 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.1e-67
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGSASLITWAVTVLAFGL 60
           MGGNGATPFFLTFAMLTAVLG+ASKLAGLYHIRAWRSDSLAGAGS SL+TWAVTVLAFGL
Sbjct: 45  MGGNGATPFFLTFAMLTAVLGIASKLAGLYHIRAWRSDSLAGAGSTSLLTWAVTVLAFGL 104

Query: 61  ACKQISIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 120
           ACKQI+IGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT
Sbjct: 105 ACKQINIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 164

Query: 121 AAPGEPPKGTAGTRVV 137
           AAPGEPPKGT GTRVV
Sbjct: 165 AAPGEPPKGTTGTRVV 180

[Close]

BLAST of Lag0016485 vs. NCBI nr
Match: XP_022959288.1 (uncharacterized protein LOC111460317 [Cucurbita moschata])

HSP 1 Score: 264.2 bits (674), Expect = 6.1e-67
Identity = 131/136 (96.32%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGSASLITWAVTVLAFGL 60
           MGGNGATPFFLTFAMLTAV+GVASKLAGLYHIRAWRSDSLAGAGS SL+TWAVTVLAFGL
Sbjct: 45  MGGNGATPFFLTFAMLTAVMGVASKLAGLYHIRAWRSDSLAGAGSTSLLTWAVTVLAFGL 104

Query: 61  ACKQISIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 120
           ACKQISIGGHRGWRLRVVEAFIIILT TQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT
Sbjct: 105 ACKQISIGGHRGWRLRVVEAFIIILTITQLLYLLLLHAGIFSRRYGPGYWDTDYGMGGGT 164

Query: 121 AAPGEPPKGTAGTRVV 137
           A PGEPPKGTAGTRVV
Sbjct: 165 AVPGEPPKGTAGTRVV 180

[Close]

BLAST of Lag0016485 vs. ExPASy Swiss-Prot
Match: Q6L4D2 (Membrane protein PM19L OS=Oryza sativa subsp. japonica OX=39947 GN=PM19L PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.7e-33
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 0


Query: 1   MGGNGATPFFLTFAMLTAVLGVASKLAGLYHIRAWRSDSLAGAGSASLITWAVTVLAFGL 60
           + GNGAT +FL FA+L  V+G ASKLAG++H+R+W + SLA   +++LI WA+T LAFGL
Sbjct: 44  VAGNGATFYFLVFAILAGVVGAASKLAGVHHVRSWGAHSLAAGAASALIAWAITALAFGL 103

Query: 61  ACKQISIGGHRGWRLRVVEAFIIILTFTQLLYLLLLHAGIFSRRY--GPGYWDTDY 115
           ACK+I IGG+RGWRLRV+EAF+IIL FTQLLY+ +LH G+FS  +  G G +  DY
Sbjct: 104 ACKEIHIGGYRGWRLRVLEAFVIILAFTQLLYVAMLHGGLFSGNHAAGAGGYGGDY 159

The following BLAST results are available for this feature:

BLAST of Lag0016485 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874443.1	5.5e-68	97.79	membrane protein PM19L [Benincasa hispida] >XP_038874444.1 membrane protein PM19...	[more]
XP_008460698.1	7.2e-68	97.06	PREDICTED: uncharacterized protein LOC103499466 [Cucumis melo]	[more]
KAA0031944.1	7.2e-68	97.06	AWPM-19-like protein [Cucumis melo var. makuwa] >TYK16765.1 AWPM-19-like protein...	[more]
XP_004147191.1	2.1e-67	96.32	membrane protein PM19L [Cucumis sativus] >KGN61555.1 hypothetical protein Csa_00...	[more]
XP_022959288.1	6.1e-67	96.32	uncharacterized protein LOC111460317 [Cucurbita moschata]	[more]

BLAST of Lag0016485 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6L4D2	2.7e-33	59.48	Membrane protein PM19L OS=Oryza sativa subsp. japonica OX=39947 GN=PM19L PE=2 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008390	AWPM-19-like	PFAM	PF05512	AWPM-19	coord: 2..99 e-value: 5.0E-42 score: 143.5
IPR008390	AWPM-19-like	PANTHER	PTHR33294	AWPM-19-LIKE FAMILY PROTEIN	coord: 1..121
None	No IPR available	PANTHER	PTHR33294:SF5	AWPM-19-LIKE FAMILY PROTEIN	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016485.1	Lag0016485.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane