Lag0016472 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016472
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 38122037 .. 38122522 (+)
RNA-Seq ExpressionLag0016472
SyntenyLag0016472
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGATTCAAAGAGGATTGGATTGGATTACCTTGAGAATCCAGACACTGTCGATTACTTCATCCAAGATCCCGGAAGGTTCTTCATCGAACTCCGGCGCCGGCTCATCGGACCACCAACGCCGGCGTTTCATCCGGCTGGTACGGAAGCGAATGCCGGGGTCGTCGTGTTCGTCATGGGCTTCAGGATCTTCGTCTCTGCGTGTGAATTTGTGGGAGCTGAAGGATTCGGCATTGGAGTCCCAAGGTCGGTAGTGGGTTGTTGCAGAGGAGAAACGAAAGCGAGAAGAGTGATTGGGAAGAAAGGGTCGCCATGGATGAAAAGGAAGAAGAAGAGTGGAGCAAGGATGAAGAAGCAAGGCATTCATTTCGCCACGTTATCCGTTTTGTTTTTTGTTTCTCTCTGCTTCTCTGTTAAAGCTAAGCTCCTTCTCCTTCATCTATACGGCGTCGTGGAATGTTCTACTTCTTCTCGAATCCAATGA

mRNA sequence

ATGGACGATTCAAAGAGGATTGGATTGGATTACCTTGAGAATCCAGACACTGTCGATTACTTCATCCAAGATCCCGGAAGGTTCTTCATCGAACTCCGGCGCCGGCTCATCGGACCACCAACGCCGGCGTTTCATCCGGCTGGTACGGAAGCGAATGCCGGGGTCGTCGTGTTCGTCATGGGCTTCAGGATCTTCGTCTCTGCGTGTGAATTTGTGGGAGCTGAAGGATTCGGCATTGGAGTCCCAAGGTCGGTAGTGGGTTGTTGCAGAGGAGAAACGAAAGCGAGAAGAGTGATTGGGAAGAAAGGGTCGCCATGGATGAAAAGGAAGAAGAAGAGTGGAGCAAGGATGAAGAAGCAAGGCATTCATTTCGCCACGTTATCCGTTTTGTTTTTTGTTTCTCTCTGCTTCTCTGTTAAAGCTAAGCTCCTTCTCCTTCATCTATACGGCGTCGTGGAATGTTCTACTTCTTCTCGAATCCAATGA

Coding sequence (CDS)

ATGGACGATTCAAAGAGGATTGGATTGGATTACCTTGAGAATCCAGACACTGTCGATTACTTCATCCAAGATCCCGGAAGGTTCTTCATCGAACTCCGGCGCCGGCTCATCGGACCACCAACGCCGGCGTTTCATCCGGCTGGTACGGAAGCGAATGCCGGGGTCGTCGTGTTCGTCATGGGCTTCAGGATCTTCGTCTCTGCGTGTGAATTTGTGGGAGCTGAAGGATTCGGCATTGGAGTCCCAAGGTCGGTAGTGGGTTGTTGCAGAGGAGAAACGAAAGCGAGAAGAGTGATTGGGAAGAAAGGGTCGCCATGGATGAAAAGGAAGAAGAAGAGTGGAGCAAGGATGAAGAAGCAAGGCATTCATTTCGCCACGTTATCCGTTTTGTTTTTTGTTTCTCTCTGCTTCTCTGTTAAAGCTAAGCTCCTTCTCCTTCATCTATACGGCGTCGTGGAATGTTCTACTTCTTCTCGAATCCAATGA

Protein sequence

MDDSKRIGLDYLENPDTVDYFIQDPGRFFIELRRRLIGPPTPAFHPAGTEANAGVVVFVMGFRIFVSACEFVGAEGFGIGVPRSVVGCCRGETKARRVIGKKGSPWMKRKKKSGARMKKQGIHFATLSVLFFVSLCFSVKAKLLLLHLYGVVECSTSSRIQ
Homology
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BLAST of Lag0016472 vs. NCBI nr
Match: KAG7026130.1 (hypothetical protein SDJN02_12629, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 2.8e-39
Identity = 84/123 (68.29%), Postives = 97/123 (78.86%), Query Frame = 0 

Query: 8   GLDYLENPDTVDYFIQDPGRFFIELRRRLIGPPTPAFHPAGTEANAGVVVFVMGFRIFVS 67
           GL YLENPDTVD+ IQDP RFFIELRR L+GPPT A  PAG+EANAGV   + GF +F+S
Sbjct: 35  GLGYLENPDTVDHIIQDPRRFFIELRRWLVGPPTAACLPAGSEANAGVEALLGGFFVFIS 94

Query: 68  ACEFVGAEGFGIGVPRSVVGCCRGETKARRVIGKKGSPWMKRKKKSGARMKKQGIHFATL 127
           A E +G EGFGIGVPR+VVGC RGE KARR+IG+ GSPWM   +     MKK+G+HFATL
Sbjct: 95  ASELLGTEGFGIGVPRTVVGCRRGEAKARRMIGENGSPWMSEAEAEAGGMKKEGLHFATL 154

Query: 128 SVL 131
           SVL
Sbjct: 155 SVL 157

The following BLAST results are available for this feature:
BLAST of Lag0016472 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026130.12.8e-3968.29hypothetical protein SDJN02_12629, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Lag0016472 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016472.1Lag0016472.1mRNA