Lag0016463 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016463
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	S-protein homolog
Location	chr12: 38036491 .. 38036901 (+)
RNA-Seq Expression	Lag0016463
Synteny	Lag0016463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCGTTTTCAACACTTGCACTATCCCTGTTAGTGTCATTGTTTCTCGCTAGCGTATACACGATGGAAGGATCACTCCTCCCATTGATTACGGTCAATATAACAAATACTTTGGACAGTCACAATGAGATCACTGTCCACTGCAAATCCGGCAATGACGATCTGGGAGTCCACAAGCTGCCATCTTTGGCCAGTTACAACTTCAACTTTCATCCAAACATCCTTGATACAACGTTGTTCTTCTGCAGCTTCCAGTGGCCTGGCTCATTTCATTACTTCGATATCTACAAGGACATGAGAGACAGAGAGCGTTGCCACAACTTGTGTTCGTGGATTGTGGCTGACAAGGGTATCTGCTTGTACAACTATGCTAACAAGATGTATGATATTTGCTATTCGTGGGCGTAA

mRNA sequence

ATGGGTTCGTTTTCAACACTTGCACTATCCCTGTTAGTGTCATTGTTTCTCGCTAGCGTATACACGATGGAAGGATCACTCCTCCCATTGATTACGGTCAATATAACAAATACTTTGGACAGTCACAATGAGATCACTGTCCACTGCAAATCCGGCAATGACGATCTGGGAGTCCACAAGCTGCCATCTTTGGCCAGTTACAACTTCAACTTTCATCCAAACATCCTTGATACAACGTTGTTCTTCTGCAGCTTCCAGTGGCCTGGCTCATTTCATTACTTCGATATCTACAAGGACATGAGAGACAGAGAGCGTTGCCACAACTTGTGTTCGTGGATTGTGGCTGACAAGGGTATCTGCTTGTACAACTATGCTAACAAGATGTATGATATTTGCTATTCGTGGGCGTAA

Coding sequence (CDS)

ATGGGTTCGTTTTCAACACTTGCACTATCCCTGTTAGTGTCATTGTTTCTCGCTAGCGTATACACGATGGAAGGATCACTCCTCCCATTGATTACGGTCAATATAACAAATACTTTGGACAGTCACAATGAGATCACTGTCCACTGCAAATCCGGCAATGACGATCTGGGAGTCCACAAGCTGCCATCTTTGGCCAGTTACAACTTCAACTTTCATCCAAACATCCTTGATACAACGTTGTTCTTCTGCAGCTTCCAGTGGCCTGGCTCATTTCATTACTTCGATATCTACAAGGACATGAGAGACAGAGAGCGTTGCCACAACTTGTGTTCGTGGATTGTGGCTGACAAGGGTATCTGCTTGTACAACTATGCTAACAAGATGTATGATATTTGCTATTCGTGGGCGTAA

Protein sequence

MGSFSTLALSLLVSLFLASVYTMEGSLLPLITVNITNTLDSHNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNILDTTLFFCSFQWPGSFHYFDIYKDMRDRERCHNLCSWIVADKGICLYNYANKMYDICYSWA

Homology

[Close]

BLAST of Lag0016463 vs. NCBI nr
Match: KGN61530.1 (hypothetical protein Csa_006387 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 9.1e-39
Identity = 78/140 (55.71%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 1   MGSFSTLALSLLVSLFLASVYTMEGSLL--PLITVNITNTL-DSHNEITVHCKSGNDDLG 60
           M SFST  LSL +SL  A+++T+EG     P +TVNITN L D +N++T+HCKSG+DDLG
Sbjct: 42  MSSFSTFGLSLFISLLFATIFTIEGKPFQSPPVTVNITNALKDVNNQLTIHCKSGDDDLG 101

Query: 61  VHKLPSLASYNFNFHPNILDTTLFFCSFQWPGSFHYFDIYKDMRDRERCHN-LCSWIVAD 120
           VH+L  LASY FNF PN   +TLF+C+F W GS HYF+IY+D+RDR +C++ LC WIV +
Sbjct: 102 VHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSHYFNIYQDLRDRAKCNDTLCLWIVGE 161

Query: 121 KGICLYNYANKMYDICYSWA 137
           +G+C+++Y    YDICY+W+
Sbjct: 162 QGLCMFDYKTNAYDICYTWS 181

[Close]

BLAST of Lag0016463 vs. NCBI nr
Match: XP_008465559.1 (PREDICTED: pumilio homolog 15-like, partial [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 3.2e-36
Identity = 67/118 (56.78%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 20  VYTMEGSLL--PLITVNITNTLDSHNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNILD 79
           ++T+EG     PL+TVNITN L   +++TVHCKSG+DDLG+H+L  L  Y F F PN + 
Sbjct: 1   LFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGIHQLQPLGGYAFTFRPNFIG 60

Query: 80  TTLFFCSFQWPGSFHYFDIYKDMRDRERCHNLCSWIVADKGICLYNYANKMYDICYSW 136
           TTLF+C+FQWPG  H FDIYKD RDR+RC+ LC WIV ++G+C+++Y  K YD CY+W
Sbjct: 61  TTLFYCTFQWPGWSHSFDIYKDSRDRDRCNGLCLWIVGEQGVCMFHYVTKKYDFCYTW 118

[Close]

BLAST of Lag0016463 vs. NCBI nr
Match: XP_022138779.1 (S-protein homolog 5 [Momordica charantia])

HSP 1 Score: 153.3 bits (386), Expect = 1.5e-33
Identity = 71/131 (54.20%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 5   STLALSLLVSLFLASVYTMEGSLLPLITVNITNTLDSHNEITVHCKSGNDDLGVHKLPSL 64
           ++L LSL   +  +++     +L    +VNITN L+SH ++TVHCKS +DDLG H+LP L
Sbjct: 7   TSLVLSLSFLVLFSTICVNVEALSARASVNITNILESHQQLTVHCKSKDDDLGFHQLPPL 66

Query: 65  ASYNFNFHPNILDTTLFFCSFQWPGSFHYFDIYKDMRDRERCHNLCSWIVADKGICLYNY 124
            SY F+F PN+  +TLFFCSFQWPGSFHYF+IY   RD + C  LC WIV +KG+CLYN 
Sbjct: 67  ISYAFDFRPNVWISTLFFCSFQWPGSFHYFEIYNQKRDEDLC-TLCLWIVGEKGLCLYNS 126

Query: 125 ANKMYDICYSW 136
               YDICY+W
Sbjct: 127 KTLKYDICYTW 136

[Close]

BLAST of Lag0016463 vs. NCBI nr
Match: XP_008460739.1 (PREDICTED: uncharacterized protein LOC103499501 [Cucumis melo])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 31  ITVNITNTLDS-HNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNILDTTLFFCSFQWPG 90
           +TVNITN +   +N++TVHCKSG+DDLGVHKLP L SY F F PN   +TLF+C FQW  
Sbjct: 1   MTVNITNEISGVNNQLTVHCKSGDDDLGVHKLPHLVSYTFTFRPNFWGSTLFYCKFQWSS 60

Query: 91  SFHYFDIYKDMRDRERCH-NLCSWIVADKGICLYNYANKMYDICYSW 136
             HYFDIYKD RD  RC+  LC WI+++KGIC++NY  K YD CY+W
Sbjct: 61  WLHYFDIYKDSRDNLRCNQTLCLWIISEKGICMFNYDTKNYDYCYAW 107

[Close]

BLAST of Lag0016463 vs. NCBI nr
Match: XP_022975116.1 (S-protein homolog 3-like, partial [Cucurbita maxima] >XP_022975285.1 S-protein homolog 3-like, partial [Cucurbita maxima] >XP_022975441.1 S-protein homolog 3-like, partial [Cucurbita maxima])

HSP 1 Score: 135.2 bits (339), Expect = 4.3e-28
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 22  TMEGSLL--PLITVNITNTLDSHNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNILDTT 81
           T++GS+   P ITVNITN L+SHN++TVHCKSG+DDLG+H+LP L  Y F F PN   TT
Sbjct: 11  TIDGSIFKDPPITVNITNVLESHNQLTVHCKSGDDDLGIHQLPYLGGYAFTFRPNFWGTT 70

Query: 82  LFFCSFQWPGSFHYFDIYKDMRDRERCH-NLCSWIVADKGI 120
            F+C+FQWPG   YFDIYKD RDR +C+  LC WIV  +GI
Sbjct: 71  QFYCTFQWPGFSQYFDIYKDYRDRIKCNKTLCLWIVGKQGI 111

[Close]

BLAST of Lag0016463 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.4e-19
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 33  VNITNTLDSHNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNILDTTLFFCSFQWPGSFH 92
           V ITN L     + +HCKS +DDLG+  L    S++F F  +I+ TTLF+C F WPG   
Sbjct: 39  VRITNRLGDGLTLNLHCKSADDDLGLKILAPNGSWSFKFRTSIVGTTLFYCHFTWPGQSK 98

Query: 93  YFDIYKDMRDRERCHNL---CSWIVADKGICLYNYANKMYDICYSW 136
            FDIY D RD  R H     C W ++ +G C+++ ++  ++ICY W
Sbjct: 99  RFDIYDDDRDGVRSHISCINCIWDISIQGPCMFSESDHAFNICYDW 144

[Close]

BLAST of Lag0016463 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-18
Identity = 45/108 (41.67%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 32  TVNITNTLDSHNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNILDTTLFFCSFQWPGSF 91
           TV I N L +   +  HCKS +DDLG   L    S++F+F       TL+FCSF WP   
Sbjct: 49  TVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNES 108

Query: 92  HYFDIYKDMRDR---ERCH-NLCSWIVADKGICLYNYANKMYDICYSW 136
           H FDIYKD RD     +C  + C W +   G C +N   K +D+CY W
Sbjct: 109 HSFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPW 156

[Close]

BLAST of Lag0016463 vs. ExPASy Swiss-Prot
Match: O23020 (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.8e-17
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 33  VNITNTLDSHNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNILDTTLFFCSFQWPGSFH 92
           V +TN +     +T+HCKS  DDLG+H +P    Y+F F PN+  +TLFFCSFQW   F 
Sbjct: 31  VTMTNLIGG-PPLTIHCKSKQDDLGIHVVPFKQEYHFKFQPNLWKSTLFFCSFQWDSQFK 90

Query: 93  YFDIYKDMRDRERCHNLCSWIVADKGICLYNYANKMYDICYSW 136
            FDIY   RD+  C + C W +   G C      K    C+ W
Sbjct: 91  SFDIYDAQRDQGICDD-CQWEIKPDGPCRLGKKAK----CFPW 127

[Close]

BLAST of Lag0016463 vs. ExPASy Swiss-Prot
Match: F4JZG1 (S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-16
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 33  VNITNTLDSHNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNIL-DTTLFFCSFQWPGSF 92
           V ITN L   + + +HCKS +DDLG+  L    S++F F P+I+   TLFFC F WPG  
Sbjct: 40  VTITNRLGDGSTLKLHCKSADDDLGLKILAPNGSWSFKFRPSIVPGVTLFFCHFTWPGQS 99

Query: 93  HYFDIYKDMRDRERCH---NLCSWIVADKGICLYNYANKMYDICYSW 136
            +F+IY D RD  R       C W +   G C ++  +  ++ICY W
Sbjct: 100 KWFNIYDDDRDGVRMGIPCIYCIWDIGKYGPCRFSEIDDAFNICYDW 146

[Close]

BLAST of Lag0016463 vs. ExPASy Swiss-Prot
Match: P0DN93 (S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-15
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 0


Query: 33  VNITNTLDSHNEITVHCKSGNDDLGVHKLPSLASYNFNFHPNILDTTLFFCSFQWPGSFH 92
           V +TN +     +T+ C+S +DDLG H L    ++ + F P+   TTLF C F W  +  
Sbjct: 33  VTVTNNISPQTTLTISCRSKDDDLGEHLLLHGQAFLWKFRPSWFRTTLFTCKFLWNNNVK 92

Query: 93  YFDIYKDMRDRERCHNLCSWIVADKGICLYNYANKMYDICYSW 136
           +FD Y+  RD+  C++ C+W +     C+    NK +D CY W
Sbjct: 93  WFDTYRSDRDQGHCYS-CNWSINADSACISGNFNKKFDRCYPW 134

The following BLAST results are available for this feature:

BLAST of Lag0016463 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61530.1	9.1e-39	55.71	hypothetical protein Csa_006387 [Cucumis sativus]	[more]
XP_008465559.1	3.2e-36	56.78	PREDICTED: pumilio homolog 15-like, partial [Cucumis melo]	[more]
XP_022138779.1	1.5e-33	54.20	S-protein homolog 5 [Momordica charantia]	[more]
XP_008460739.1	1.3e-32	60.75	PREDICTED: uncharacterized protein LOC103499501 [Cucumis melo]	[more]
XP_022975116.1	4.3e-28	61.39	S-protein homolog 3-like, partial [Cucurbita maxima] >XP_022975285.1 S-protein h...	[more]

BLAST of Lag0016463 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMQ4	8.4e-19	41.51	S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1	[more]
F4JLQ5	3.2e-18	41.67	S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1	[more]
O23020	7.8e-17	41.75	S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1	[more]
F4JZG1	2.3e-16	40.19	S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1	[more]
P0DN93	2.5e-15	34.95	S-protein homolog 29 OS=Arabidopsis thaliana OX=3702 GN=SPH29 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 32..135 e-value: 1.4E-31 score: 109.1
IPR010264	Plant self-incompatibility S1	PANTHER	PTHR31232	FAMILY NOT NAMED	coord: 9..135
None	No IPR available	PANTHER	PTHR31232:SF76	S-PROTEIN HOMOLOG 2	coord: 9..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016463.1	Lag0016463.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane