Lag0016448 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016448
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr12: 37879079 .. 37879919 (-)
RNA-Seq ExpressionLag0016448
SyntenyLag0016448
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCCATATCCGACATGAGCACTCTTCGGTCGATGGCCGAGGCCGAGCAGAAGCCCAATCACAAAAAGGCCCGCAAAAGTTCGCCGCTAAAGACAACGTCAGGTACGTACACAGGGAGTAATGACAGGAAAAAATCAGAGGCTCGGGCAAAGTCCGAGGCTGAGTAGGGCCAAAAGGGGCGAGAGCTATCCAAATGGCTAAAAGACGAAGCAACAAGGTGCCGAGCCTCTGCGCTAACACTCGCAGGTTGGGCAAGGCAATGGATTAGTAAGATCCAACGGAAGTCAATCGGTTCGTTTAAAGAATTGGCCCGAGCGCTTGTTACATAATTCCTAGCAGTCTGGAGCCGACATAAGCCTCAGATCAAGTTGCTGACAGTAAAGCAGGGGCCTCGAGAAAGCTTGAAGGATTATATTAACAGATTTTGTAACGAAGTTTTGCAGGTAGAAGGCCATGACGATGGAGTTGCCTTGACTGCTATGATTTTAGGTCTACAGGATGGAAGACTACTCAGCTCAGCCAGCAAGGACAGTCCTCGGCCAATGGCCGAGGCCGGAAAGAGGCCAAGGAGCCACAGGGTTGTGCGGAACAAAAAGTCAGATTCGACAGGTATACACCACTAACAGCTTCGCTTGAACATGTCTTGGCCACAATGCAGGATGCAAACCTAATGAAGTGCCCAGAAAAATTGAGGTCGGACCCAGACGGGAGGAATGGGAACAAGTGATGCATGTTCCACGGAGACCACGGTCATACAACTCGGAAATGCATACAGTTGAGAGACGAGATAGAAGCCCTAACCTGAAAGGGTTACCTCAAGGAGTTTGTGGGAAATGA

mRNA sequence

ATGGAGCCCATATCCGACATGAGCACTCTTCGGTCGATGGCCGAGGCCGAGCAGAAGCCCAATCACAAAAAGGCCCGCAAAAGTTCGCCGCTAAAGACAACGTCAGTCTGGAGCCGACATAAGCCTCAGATCAAGTTGCTGACAGTAAAGCAGGGGCCTCGAGAAAGCTTGAAGGATTATATTAACAGATTTTGTAACGAAGTTTTGCAGGTAGAAGGCCATGACGATGGAGTTGCCTTGACTGCTATGATTTTAGGTCTACAGGATGGAAGACTACTCAGCTCAGCCAGCAAGGACAGTCCTCGGCCAATGGCCGAGGCCGGAAAGAGGCCAAGGAGCCACAGGGTTGTGCGGAACAAAAAGTCAGATTCGACAGGATGCAAACCTAATGAAGTGCCCAGAAAAATTGAGGTCGGACCCAGACGGGAGGAATGGGAACAAGTGATGCATGTTCCACGGAGACCACGGTCATACAACTCGGAAATGCATACAGTTGAGAGACGAGATAGAAGCCCTAACCTGAAAGGGTTACCTCAAGGAGTTTGTGGGAAATGA

Coding sequence (CDS)

ATGGAGCCCATATCCGACATGAGCACTCTTCGGTCGATGGCCGAGGCCGAGCAGAAGCCCAATCACAAAAAGGCCCGCAAAAGTTCGCCGCTAAAGACAACGTCAGTCTGGAGCCGACATAAGCCTCAGATCAAGTTGCTGACAGTAAAGCAGGGGCCTCGAGAAAGCTTGAAGGATTATATTAACAGATTTTGTAACGAAGTTTTGCAGGTAGAAGGCCATGACGATGGAGTTGCCTTGACTGCTATGATTTTAGGTCTACAGGATGGAAGACTACTCAGCTCAGCCAGCAAGGACAGTCCTCGGCCAATGGCCGAGGCCGGAAAGAGGCCAAGGAGCCACAGGGTTGTGCGGAACAAAAAGTCAGATTCGACAGGATGCAAACCTAATGAAGTGCCCAGAAAAATTGAGGTCGGACCCAGACGGGAGGAATGGGAACAAGTGATGCATGTTCCACGGAGACCACGGTCATACAACTCGGAAATGCATACAGTTGAGAGACGAGATAGAAGCCCTAACCTGAAAGGGTTACCTCAAGGAGTTTGTGGGAAATGA

Protein sequence

MEPISDMSTLRSMAEAEQKPNHKKARKSSPLKTTSVWSRHKPQIKLLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMILGLQDGRLLSSASKDSPRPMAEAGKRPRSHRVVRNKKSDSTGCKPNEVPRKIEVGPRREEWEQVMHVPRRPRSYNSEMHTVERRDRSPNLKGLPQGVCGK
Homology
BLAST of Lag0016448 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-07
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 0

Query: 35  SVWSRHKPQIKLLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMILGLQDGRLLS 94
           S   R KP   LLTVKQ   E+L+DYI R+ NE+ QV+G+DDG+AL+ ++ GL+ G+L  
Sbjct: 265 SARQRGKPVTYLLTVKQQEGETLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMGKLWW 324

Query: 95  SASKDSPRPMAE 107
           S SK  P   +E
Sbjct: 325 SVSKRPPTSYSE 336

BLAST of Lag0016448 vs. NCBI nr
Match: XP_015386823.1 (uncharacterized protein LOC107177480 [Citrus sinensis] >XP_024038300.1 uncharacterized protein LOC112097346 [Citrus clementina])

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-07
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = 0

Query: 35  SVWSRHKPQIKLLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMILGLQDGRLLS 94
           S   R KP   LLTVKQ   E+L+DYI ++ NE++QV+G+DDG++L  ++ GL+ G+L  
Sbjct: 114 SAQQRRKPVTYLLTVKQQEWETLRDYIRKYNNEIIQVDGYDDGISLFGIMEGLKMGKLWW 173

Query: 95  SASKDSPRPMAE 107
           S SK  P   +E
Sbjct: 174 SVSKRPPTSYSE 185

BLAST of Lag0016448 vs. NCBI nr
Match: XP_024047974.1 (uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 uncharacterized protein LOC112498174 [Citrus sinensis])

HSP 1 Score: 65.5 bits (158), Expect = 5.6e-07
Identity = 39/97 (40.21%), Postives = 53/97 (54.64%), Query Frame = 0

Query: 35  SVWSRHKPQIKLLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMILGLQDGRLLS 94
           S   R KP   LLTVKQ   ESL++YI R+  E  QV+G+DDGVAL+ ++ GLQ GRL  
Sbjct: 107 SARQRGKPVTYLLTVKQHEGESLREYIQRYNAETTQVDGYDDGVALSGLMEGLQMGRLWW 166

Query: 95  SASKDSPRPMAEAGKRPRSHRVVRNKKSDSTGCKPNE 132
           S +K+ P   +E   R   +     +     G +  E
Sbjct: 167 SVAKNPPSTYSEMLSRAEKYANAEERFQSKKGREKGE 203

BLAST of Lag0016448 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 4.7e-06
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 39  RHKPQIKLLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMILGLQDGRLLSSASK 98
           + KP   LLT+KQ   ESLK+Y+ RF  E LQVEG  D VAL A + G++D RL+ S  K
Sbjct: 88  KSKPVTYLLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGK 147

Query: 99  DSPRPMAEAGKRPRSH 115
            +P    EA  R + +
Sbjct: 148 RTPGTFMEALSRAQKY 163

BLAST of Lag0016448 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 62.0 bits (149), Expect = 6.2e-06
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 0

Query: 37  WSRHKPQIKLLTVKQGPRESLKDYINRFCNEVLQVEGHDDGVALTAMILGLQDGRLLSSA 96
           W+R +P   LLT+KQ   ESLKDY+ RF  E LQVEG  D V L   I G++D +L+ S 
Sbjct: 86  WNRSRPVAYLLTIKQKATESLKDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSF 145

Query: 97  SKDSPRPMAEAGKRPRSHRVVR---NKKSDSTGCKPNEVPRKIEVGPRRE--EWEQ 148
            K +    +EA  R +++  V    + K D  G   +   ++   G +R    WE+
Sbjct: 146 GKRTSGTFSEARSRAQTYMSVGELIHSKRDPKGKYADYNTKRKRPGEKRHGLRWER 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024041095.11.1e-0748.61uncharacterized protein LOC112098853 [Citrus clementina][more]
XP_015386823.13.3e-0745.83uncharacterized protein LOC107177480 [Citrus sinensis] >XP_024038300.1 uncharact... [more]
XP_024047974.15.6e-0740.21uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 unchara... [more]
XP_022158344.14.7e-0646.05uncharacterized protein LOC111024851 [Momordica charantia][more]
XP_022147761.16.2e-0636.21uncharacterized protein LOC111016619 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016448.1Lag0016448.1mRNA