Lag0016362 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016362
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDUF1985 domain-containing protein
Locationchr12: 36808541 .. 36809258 (+)
RNA-Seq ExpressionLag0016362
SyntenyLag0016362
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGGAAGAACAAGACCAAGAGTGTCGTCGACAGAACACTATTCGACGACGTTGAAGACCTGAATTATTACAACAGCAAGGACTGGGATAATATCATATGGGAGTGAACACTCAAGGTTCTTAAGGTTGCCTTGAAAAGATAGGGTAGATGATCACAGAGGAAGGTCTCTACGACTGACGGCAAGTCTGTCAAGTATTTGCTACCCGGGTTTCCACACGTCTTTTAGGTAATGTTTCGGTACTGTACATATAAAAAATTTGTTAGTTTTAACCGAGAACCAACCTAACGTGTTACTTTCAGGTTTGGGCGTATGAGATAATGTCGTCTGTTACGGGGAGGGTTGCCATCAGGAGTAAGGACTTGGCAGTTCCTGGTTTCTCAGATGGTCCTGTAGCAGCTCGCCGAAGAACGTGGTACTGCAGTATGACGTTTTCCAGTTGGCACAAGTAAGGACATCTTCTGATTAGGTACTTTTCAATTGAATTATGGGGCTTTCCCTAGTGTAAATGATTGACACTTGTACAATGCAGACGGTTGTTACCACGTCCCTTGACATGTCAATCGAGGAGGAGCGATATCAGGATGCTAGAATCAATCAACGACTGGTATTTGTACATGAACTCGAGGACGTTGAAGGGGATTCCTTGGAAGCTGTTGGATATGCACAGGGCAATCAGACCCAGAAAGCAATTGACCCATTGGATGGTGATTAG

mRNA sequence

ATGATGGGGAAGAACAAGACCAAGAGTGTCGTCGACAGAACACTATTCGACGACGTTGAAGACCTGAATTATTACAACAGCAAGGACTGGGATAATATCATATGGGAATGGTCCTGTAGCAGCTCGCCGAAGAACGTGGTACTGCAGTATGACGTTTTCCAGTTGGCACAAACGGTTGTTACCACGTCCCTTGACATGTCAATCGAGGAGGAGCGATATCAGGATGCTAGAATCAATCAACGACTGGTATTTGTACATGAACTCGAGGACGTTGAAGGGGATTCCTTGGAAGCTGTTGGATATGCACAGGGCAATCAGACCCAGAAAGCAATTGACCCATTGGATGGTGATTAG

Coding sequence (CDS)

ATGATGGGGAAGAACAAGACCAAGAGTGTCGTCGACAGAACACTATTCGACGACGTTGAAGACCTGAATTATTACAACAGCAAGGACTGGGATAATATCATATGGGAATGGTCCTGTAGCAGCTCGCCGAAGAACGTGGTACTGCAGTATGACGTTTTCCAGTTGGCACAAACGGTTGTTACCACGTCCCTTGACATGTCAATCGAGGAGGAGCGATATCAGGATGCTAGAATCAATCAACGACTGGTATTTGTACATGAACTCGAGGACGTTGAAGGGGATTCCTTGGAAGCTGTTGGATATGCACAGGGCAATCAGACCCAGAAAGCAATTGACCCATTGGATGGTGATTAG

Protein sequence

MMGKNKTKSVVDRTLFDDVEDLNYYNSKDWDNIIWEWSCSSSPKNVVLQYDVFQLAQTVVTTSLDMSIEEERYQDARINQRLVFVHELEDVEGDSLEAVGYAQGNQTQKAIDPLDGD
Homology
BLAST of Lag0016362 vs. NCBI nr
Match: XP_038875066.1 (uncharacterized protein LOC120067593 [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 9.4e-08
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 1   MMGKNKTKSVVDRTLFDDVEDLNYYNSKDWDNIIWEWSCSSSPKNVVLQYDVFQLAQTVV 60
           MMGKNK KSVVDRTLF+DVED+ YYNS DW  IIW+ +  +    +  +  +++  +T V
Sbjct: 164 MMGKNKQKSVVDRTLFEDVEDIYYYNSLDWGTIIWQRTFDALKITLNDKVGLYK-EKTKV 223

Query: 61  TTSLDMSIEEERYQDARIN 80
              L MS  E++++D +I+
Sbjct: 224 KKGLVMSDAEKKFRDTQID 241

BLAST of Lag0016362 vs. NCBI nr
Match: XP_038887081.1 (uncharacterized protein LOC120077257 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-07
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 0

Query: 1   MMGKNKTKSVVDRTLFDDVEDLNYYNSKDWDNIIWEWSCSSSPKNVVLQYDVFQLA---Q 60
           MMGKNK K+VVDRTLFDDVED+++YN+ DW  IIW+ +            D  + A   +
Sbjct: 106 MMGKNKQKNVVDRTLFDDVEDIDHYNNLDWGTIIWQRT-----------LDAMKTALNDK 165

Query: 61  TVVTTSLDMSIEEERYQDARINQRLV 84
           T V   L MS  E+ ++D  I++R+V
Sbjct: 166 TKVKEGLVMSDTEKEFRDTSIDRRVV 180

BLAST of Lag0016362 vs. NCBI nr
Match: XP_038896702.1 (uncharacterized protein LOC120084963 [Benincasa hispida])

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-07
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 1   MMGKNKTKSVVDRTLFDDVEDLNYYNSKDWDNIIWEWSCSSSPKNVVLQYDVFQLA---Q 60
           MMGKNK K+ +D TLFDDVED++YYNS DWD IIW+ +            D  + A   +
Sbjct: 160 MMGKNKQKNAMDHTLFDDVEDIDYYNSLDWDLIIWQRT-----------LDFLKTALKDK 219

Query: 61  TVVTTSLDMSIEEERYQDARINQRLV 84
           T V  SL M   E+ ++DA I++R V
Sbjct: 220 TKVKESLVMFEAEKEFRDASIDRRAV 234

BLAST of Lag0016362 vs. NCBI nr
Match: XP_008437500.1 (PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-07
Identity = 41/155 (26.45%), Postives = 66/155 (42.58%), Query Frame = 0

Query: 1   MMGKNKTKSVVDRTLFDDVEDLNYYNSKDWDNIIWE------------------------ 60
           MMGK++TKS+++++L DDVEDL YYNS DW +I+WE                        
Sbjct: 247 MMGKDRTKSIINKSLLDDVEDLKYYNSLDWGHILWERTLRGLQNALKNKVDMYKKKVKLN 306

Query: 61  ----------------------------------------------WSCSSSPKNVVLQY 86
                                                         WSCS S  + +LQ 
Sbjct: 307 KNYNVKYSLPGFPHAFQVWAYEIISSMAAGRAVTRLNNDAVPRFLRWSCSYSLPSKLLQR 366

BLAST of Lag0016362 vs. NCBI nr
Match: XP_008437501.1 (PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-07
Identity = 41/155 (26.45%), Postives = 66/155 (42.58%), Query Frame = 0

Query: 1   MMGKNKTKSVVDRTLFDDVEDLNYYNSKDWDNIIWE------------------------ 60
           MMGK++TKS+++++L DDVEDL YYNS DW +I+WE                        
Sbjct: 245 MMGKDRTKSIINKSLLDDVEDLKYYNSLDWGHILWERTLRGLQNALKNKVDMYKKKVKLN 304

Query: 61  ----------------------------------------------WSCSSSPKNVVLQY 86
                                                         WSCS S  + +LQ 
Sbjct: 305 KNYNVKYSLPGFPHAFQVWAYEIISSMAAGRAVTRLNNDAVPRFLRWSCSYSLPSKLLQR 364

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875066.19.4e-0845.57uncharacterized protein LOC120067593 [Benincasa hispida][more]
XP_038887081.12.1e-0744.19uncharacterized protein LOC120077257 [Benincasa hispida][more]
XP_038896702.12.7e-0745.35uncharacterized protein LOC120084963 [Benincasa hispida][more]
XP_008437500.16.1e-0726.45PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo][more]
XP_008437501.16.1e-0726.45PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016362.1Lag0016362.1mRNA