Lag0016266 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016266
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 35493154 .. 35493648 (+)
RNA-Seq ExpressionLag0016266
SyntenyLag0016266
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGCTTCCCTTTTCTGCTTTCTTGCTTCTTCTTTCACTGAATTTCTTCTTCTTCTTCTTCTACTGTTTCTCGTCTCGCTCGGCGTGTTCCGAGCATCAAAACATCCTCCCATGTGAAATCGTTCAGCTGGTAGAAAAATCGAGTCGTGTATCGGTGTTTCTCGTGTTTAATGCCATCATTTTCAGCCTCTTGTCCCAGAATGTTAATCGAACATCGAGCGAAGAAGAAGGGATGGAATTGGAGTTAGTAGAATACTATGATGATTATAGCGACGACGACAAACTACTTAGTTACGAAGATCGCGTTCACGAGAGTTGTGTTAAAGATGATCGAGAAGAAGGGTTTGAAGAAGAGGATTTGGAGGAGAAGGTTCAAGAATTCATAGACATGATGAACAATTTATGGAGGGAAGAAAAGATTCATGATCTCTTACTTCATCATCCAAGTTACAACCTGAAAAAAGCACCATTAAACATTTGGTCTTCCTAA

mRNA sequence

ATGAGGAAGCTTCCCTTTTCTGCTTTCTTGCTTCTTCTTTCACTGAATTTCTTCTTCTTCTTCTTCTACTGTTTCTCGTCTCGCTCGGCGTGTTCCGAGCATCAAAACATCCTCCCATGTGAAATCGTTCAGCTGGTAGAAAAATCGAGTCGTGTATCGGTGTTTCTCGTGTTTAATGCCATCATTTTCAGCCTCTTGTCCCAGAATGTTAATCGAACATCGAGCGAAGAAGAAGGGATGGAATTGGAGTTAGTAGAATACTATGATGATTATAGCGACGACGACAAACTACTTAGTTACGAAGATCGCGTTCACGAGAGTTGTGTTAAAGATGATCGAGAAGAAGGGTTTGAAGAAGAGGATTTGGAGGAGAAGGTTCAAGAATTCATAGACATGATGAACAATTTATGGAGGGAAGAAAAGATTCATGATCTCTTACTTCATCATCCAAGTTACAACCTGAAAAAAGCACCATTAAACATTTGGTCTTCCTAA

Coding sequence (CDS)

ATGAGGAAGCTTCCCTTTTCTGCTTTCTTGCTTCTTCTTTCACTGAATTTCTTCTTCTTCTTCTTCTACTGTTTCTCGTCTCGCTCGGCGTGTTCCGAGCATCAAAACATCCTCCCATGTGAAATCGTTCAGCTGGTAGAAAAATCGAGTCGTGTATCGGTGTTTCTCGTGTTTAATGCCATCATTTTCAGCCTCTTGTCCCAGAATGTTAATCGAACATCGAGCGAAGAAGAAGGGATGGAATTGGAGTTAGTAGAATACTATGATGATTATAGCGACGACGACAAACTACTTAGTTACGAAGATCGCGTTCACGAGAGTTGTGTTAAAGATGATCGAGAAGAAGGGTTTGAAGAAGAGGATTTGGAGGAGAAGGTTCAAGAATTCATAGACATGATGAACAATTTATGGAGGGAAGAAAAGATTCATGATCTCTTACTTCATCATCCAAGTTACAACCTGAAAAAAGCACCATTAAACATTTGGTCTTCCTAA

Protein sequence

MRKLPFSAFLLLLSLNFFFFFFYCFSSRSACSEHQNILPCEIVQLVEKSSRVSVFLVFNAIIFSLLSQNVNRTSSEEEGMELELVEYYDDYSDDDKLLSYEDRVHESCVKDDREEGFEEEDLEEKVQEFIDMMNNLWREEKIHDLLLHHPSYNLKKAPLNIWSS
Homology
[Close]
BLAST of Lag0016266 vs. NCBI nr
Match: KAE8646698.1 (hypothetical protein Csa_005140 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 7.9e-13
Identity = 63/148 (42.57%), Postives = 85/148 (57.43%), Query Frame = 0 

Query: 1   MRKLPFSAFLLLLSLNFFFFFFYCFSSRSACSEHQNILPCEIVQLVEKSSRVSVFLVFNA 60
           M+KL      +++ L+FF FF   F+ R+  ++   I+      LV KSSR S+FL  N 
Sbjct: 1   MKKLQVIFLCIIIVLSFFLFFMVSFTHRNVVNQSMEIV------LVVKSSRASIFLASNT 60

Query: 61  IIFSLLSQNVNRTSSEEEGMELELVEYYDDYSDDDKLLSYE-DRVHESCVKDDREEGFEE 120
           II  L  + + + SS+EE  E    +     SDD +L SYE   V +SC +D  EEG  +
Sbjct: 61  IILILFGKKLKQLSSKEEEEE-RCKDCCSGCSDDHELNSYEMICVEDSCDEDYCEEGMIQ 120

Query: 121 EDLEEKVQEFIDMMNNLWREEKIHDLLL 148
           +DLE+K QEFIDMMN  WREE IHD  L
Sbjct: 121 DDLEKKAQEFIDMMNAFWREELIHDRFL 141

[Close]
BLAST of Lag0016266 vs. NCBI nr
Match: KAA0040002.1 (hypothetical protein E6C27_scaffold122G002850 [Cucumis melo var. makuwa] >TYK24499.1 hypothetical protein E5676_scaffold266G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-07
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 0 

Query: 32  SEHQNILPCEIVQLVE-----KSSRVSVFLVFNAIIFSLLSQNVNRTSSEEEGMELELVE 91
           S+H+N     I++L+E     KSSR S+FL  N I+  L  + + R SS+E+  E    +
Sbjct: 4   SKHRNF----IIRLIEIIWVVKSSRASMFLASNTIVLILFWEKLKRLSSKEK--ESWCKD 63

Query: 92  YYDDYSDDDKLLSYEDRVHESCVKDDREEGFEE---EDLEEKVQEFIDMMNNLWREEKIH 148
           +   +SD +  L+ E+ +   CV+D  +EG EE   +DLE+K QEFIDMMN  WREE IH
Sbjct: 64  FCSRHSDGE--LNSEEII---CVEDSCDEGCEEGIQDDLEKKAQEFIDMMNAFWREELIH 116

The following BLAST results are available for this feature:
BLAST of Lag0016266 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646698.17.9e-1342.57hypothetical protein Csa_005140 [Cucumis sativus][more]
KAA0040002.13.8e-0741.94hypothetical protein E6C27_scaffold122G002850 [Cucumis melo var. makuwa] >TYK244... [more]
BLAST of Lag0016266 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016266.1Lag0016266.1mRNA