Lag0016153 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016153
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Arginine decarboxylase
Location	chr12: 34024504 .. 34024872 (-)
RNA-Seq Expression	Lag0016153
Synteny	Lag0016153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTTGATACAATCCGTTGTGTATGCGACCGTAGGGCCGTCAAGCACCCAATAATCTGCAGTGAAAATGGACGAGCAATCGTCTCTCATCACTCTATTCTGATTTTTGAGGTCGTTTCTGCTAGCACTTATGAGGTTCCATCCATGAGCTCGCTTGAACTTCAGTATCTTGTTGATGGGCTGACAGAAGATGCTCGAATTGATTATCATAACCTTTCGACTACAATTTATATGGGTGAGTACAAGACATGCTTGCTATTTGCAGACCAATTGAAACAACGATGCCTTGAGAAATTCAAGGATGGGTGTTTGGGAATGGAACAACTAGCTGCGGTGGATGGGCTTTGTGCTCTTGTTTCACCTTGA

mRNA sequence

ATGGTTGTTGATACAATCCGTTGTGTATGCGACCGTAGGGCCGTCAAGCACCCAATAATCTGCAGTGAAAATGGACGAGCAATCGTCTCTCATCACTCTATTCTGATTTTTGAGGTCGTTTCTGCTAGCACTTATGAGGTTCCATCCATGAGCTCGCTTGAACTTCAGTATCTTGTTGATGGGCTGACAGAAGATGCTCGAATTGATTATCATAACCTTTCGACTACAATTTATATGGGTGAGTACAAGACATGCTTGCTATTTGCAGACCAATTGAAACAACGATGCCTTGAGAAATTCAAGGATGGGTGTTTGGGAATGGAACAACTAGCTGCGGTGGATGGGCTTTGTGCTCTTGTTTCACCTTGA

Coding sequence (CDS)

ATGGTTGTTGATACAATCCGTTGTGTATGCGACCGTAGGGCCGTCAAGCACCCAATAATCTGCAGTGAAAATGGACGAGCAATCGTCTCTCATCACTCTATTCTGATTTTTGAGGTCGTTTCTGCTAGCACTTATGAGGTTCCATCCATGAGCTCGCTTGAACTTCAGTATCTTGTTGATGGGCTGACAGAAGATGCTCGAATTGATTATCATAACCTTTCGACTACAATTTATATGGGTGAGTACAAGACATGCTTGCTATTTGCAGACCAATTGAAACAACGATGCCTTGAGAAATTCAAGGATGGGTGTTTGGGAATGGAACAACTAGCTGCGGTGGATGGGCTTTGTGCTCTTGTTTCACCTTGA

Protein sequence

MVVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDGLTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALVSP

Homology

[Close]

BLAST of Lag0016153 vs. NCBI nr
Match: XP_038900377.1 (arginine decarboxylase [Benincasa hispida])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 103/120 (85.83%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDG 61
           VVD +RCVCDRR+VKHPIICSE+GRAIVSHHS+LIFE VSAS+YE PSMSSLELQYLVDG
Sbjct: 379 VVDAVRCVCDRRSVKHPIICSESGRAIVSHHSVLIFEAVSASSYEAPSMSSLELQYLVDG 438

Query: 62  LTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALVS 121
           LT+DAR+DY NLS   YMGEYKTCLL+ADQLKQRC+EKFKDGCLGMEQLAAVDGLCAL+S
Sbjct: 439 LTDDARVDYQNLSAAAYMGEYKTCLLYADQLKQRCVEKFKDGCLGMEQLAAVDGLCALIS 498

[Close]

BLAST of Lag0016153 vs. NCBI nr
Match: XP_008461023.1 (PREDICTED: arginine decarboxylase [Cucumis melo] >KAA0045659.1 arginine decarboxylase [Cucumis melo var. makuwa] >TYK02603.1 arginine decarboxylase [Cucumis melo var. makuwa])

HSP 1 Score: 219.2 bits (557), Expect = 2.0e-53
Identity = 103/120 (85.83%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDG 61
           VVD +RCVCDRR+VKHPIICSE+GRAIVSHHS+LIFE VSAS+YEVPSMSSLELQYLVDG
Sbjct: 378 VVDAVRCVCDRRSVKHPIICSESGRAIVSHHSVLIFEAVSASSYEVPSMSSLELQYLVDG 437

Query: 62  LTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALVS 121
           LT+DAR+DY NLS   YMGEYKTCL++ADQLKQRC+EKFKDGCLGMEQLAAVDGLCALV+
Sbjct: 438 LTDDARVDYQNLSAAAYMGEYKTCLVYADQLKQRCVEKFKDGCLGMEQLAAVDGLCALVA 497

[Close]

BLAST of Lag0016153 vs. NCBI nr
Match: XP_022146142.1 (arginine decarboxylase [Momordica charantia])

HSP 1 Score: 218.4 bits (555), Expect = 3.4e-53
Identity = 103/120 (85.83%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDG 61
           VV+ +RC CDRR+VKHPIICSE+GRAIVSHHS+LIFE VSASTYEVPSM+SLELQYLVDG
Sbjct: 377 VVEAVRCACDRRSVKHPIICSESGRAIVSHHSVLIFEAVSASTYEVPSMNSLELQYLVDG 436

Query: 62  LTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALVS 121
           LT+DAR+DY NLS   YMGEYKTCLL+ADQLKQRC+EKFKDGCLGMEQLAAVDGLCALVS
Sbjct: 437 LTDDARLDYQNLSAAAYMGEYKTCLLYADQLKQRCVEKFKDGCLGMEQLAAVDGLCALVS 496

[Close]

BLAST of Lag0016153 vs. NCBI nr
Match: KGN61856.1 (hypothetical protein Csa_006231 [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 5.8e-53
Identity = 102/120 (85.00%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDG 61
           VVD +RCVCDRR+VKHPIICSE+GRAIVSHHS+LIFE VSAS+YEVPSMSSLELQYLVDG
Sbjct: 378 VVDAVRCVCDRRSVKHPIICSESGRAIVSHHSVLIFEAVSASSYEVPSMSSLELQYLVDG 437

Query: 62  LTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALVS 121
           LT++AR+DY NLS   YMGEYKTCL++ADQLKQRC+EKFKDGCLGMEQLAAVDGLCALV+
Sbjct: 438 LTDEARVDYQNLSAAAYMGEYKTCLVYADQLKQRCVEKFKDGCLGMEQLAAVDGLCALVA 497

[Close]

BLAST of Lag0016153 vs. NCBI nr
Match: NP_001295829.1 (arginine decarboxylase [Cucumis sativus] >AAP36992.2 arginine decarboxylase [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 4.2e-51
Identity = 100/120 (83.33%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDG 61
           VVD +RCVCD R+VKHPIICSE+GRAIVS HS+LIFE VSAS+YEVPSMSSLELQYLVDG
Sbjct: 378 VVDAVRCVCDCRSVKHPIICSESGRAIVSRHSVLIFEAVSASSYEVPSMSSLELQYLVDG 437

Query: 62  LTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALVS 121
           LT++AR+DY NLS   YMGEYKTCL++ADQLKQRC+EKFKDGCLGMEQLAAVDGLCALV+
Sbjct: 438 LTDEARVDYQNLSAAAYMGEYKTCLVYADQLKQRCVEKFKDGCLGMEQLAAVDGLCALVA 497

[Close]

BLAST of Lag0016153 vs. ExPASy Swiss-Prot
Match: Q43075 (Arginine decarboxylase OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-38
Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDG 61
           VV  ++ VCDR+ VKHP+ICSE+GRAIVSHHSILIFE   AST   PS+SS+ELQYL +G
Sbjct: 378 VVHAVKYVCDRKNVKHPVICSESGRAIVSHHSILIFEASGASTNTAPSLSSIELQYLGEG 437

Query: 62  LTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALVS 121
           L+E+A  DY N+S     GEY+ CLL+ +Q K+RC+E+FK G LG+EQLAAVDGLC L++
Sbjct: 438 LSEEALADYQNISAATLRGEYEACLLYTEQFKKRCVEEFKQGTLGIEQLAAVDGLCDLIT 497

[Close]

BLAST of Lag0016153 vs. ExPASy Swiss-Prot
Match: Q96412 (Arginine decarboxylase OS=Dianthus caryophyllus OX=3570 GN=ADC PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.3e-36
Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSM--SSLELQYLV 61
           VV T+  VCDR+ VK P+ICSE+ RAIVSHHSIL+FE VS+S+   P M  S+L L YLV
Sbjct: 373 VVGTVMSVCDRKGVKSPVICSESVRAIVSHHSILVFEAVSSSSSASPPMPGSTLALDYLV 432

Query: 62  DGLTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCAL 121
           DGLT++ + +Y +L+     GEY++CL+++  LKQRC+E FKDGCLGMEQLAAVDGLC L
Sbjct: 433 DGLTDEVKGEYRSLTAAAMRGEYESCLMYSGMLKQRCVELFKDGCLGMEQLAAVDGLCEL 492

[Close]

BLAST of Lag0016153 vs. ExPASy Swiss-Prot
Match: P49726 (Arginine decarboxylase OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-35
Identity = 78/121 (64.46%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSM-SSLELQYLVD 61
           VV  +  VCDR+  KHP+ICSE+GRAIVSHHSILIFE VSAST  V +  SS  LQ LV+
Sbjct: 259 VVQAVLYVCDRKGGKHPVICSESGRAIVSHHSILIFEAVSASTSHVSTQPSSGGLQSLVE 318

Query: 62  GLTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALV 121
            L EDAR DY NLS     GEY TCL+++DQLKQRC+E+FKDG L +EQLAAVD +C  V
Sbjct: 319 TLNEDARADYRNLSAAAVRGEYDTCLIYSDQLKQRCVEQFKDGSLDIEQLAAVDSICDWV 378

[Close]

BLAST of Lag0016153 vs. ExPASy Swiss-Prot
Match: O82475 (Arginine decarboxylase OS=Brassica juncea OX=3707 GN=ADC1 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.0e-33
Identity = 68/120 (56.67%), Postives = 93/120 (77.50%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDG 61
           VV ++R VCD+++VKHP+ICSE+GRAIVSHHS+LIFE VSA      + S  +LQ+L++G
Sbjct: 358 VVASVRFVCDQKSVKHPVICSESGRAIVSHHSVLIFEAVSAGKRHETTPS--DLQFLLEG 417

Query: 62  LTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALVS 121
            +E+AR DY NL   +  G+ ++CLL+ DQLKQRC+E+FK+G L +EQLA VDGLC  V+
Sbjct: 418 YSEEARGDYENLYDAVMRGDRESCLLYVDQLKQRCVEEFKEGSLSIEQLAGVDGLCEWVT 475

[Close]

BLAST of Lag0016153 vs. ExPASy Swiss-Prot
Match: O23141 (Arginine decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=ADC2 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-31
Identity = 66/119 (55.46%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 2   VVDTIRCVCDRRAVKHPIICSENGRAIVSHHSILIFEVVSASTYEVPSMSSLELQYLVDG 61
           VV ++R VCDR +VKHP+ICSE+GRAIVSHHS+LIFE VSA    V   +  ++Q+L++G
Sbjct: 364 VVASVRVVCDRSSVKHPVICSESGRAIVSHHSVLIFEAVSADKPMVHQATPGDIQFLLEG 423

Query: 62  LTEDARIDYHNLSTTIYMGEYKTCLLFADQLKQRCLEKFKDGCLGMEQLAAVDGLCALV 121
             E+AR +Y +L   +  G++++CLL+ DQLKQRC+E FK+G L +EQLA+VDGLC  V
Sbjct: 424 -NEEARANYEDLYAAVMRGDHESCLLYVDQLKQRCVEGFKEGVLSIEQLASVDGLCEWV 481

The following BLAST results are available for this feature:

BLAST of Lag0016153 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900377.1	1.5e-53	85.83	arginine decarboxylase [Benincasa hispida]	[more]
XP_008461023.1	2.0e-53	85.83	PREDICTED: arginine decarboxylase [Cucumis melo] >KAA0045659.1 arginine decarbox...	[more]
XP_022146142.1	3.4e-53	85.83	arginine decarboxylase [Momordica charantia]	[more]
KGN61856.1	5.8e-53	85.00	hypothetical protein Csa_006231 [Cucumis sativus]	[more]
NP_001295829.1	4.2e-51	83.33	arginine decarboxylase [Cucumis sativus] >AAP36992.2 arginine decarboxylase [Cuc...	[more]

BLAST of Lag0016153 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43075	1.5e-38	62.50	Arginine decarboxylase OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q96412	2.3e-36	61.48	Arginine decarboxylase OS=Dianthus caryophyllus OX=3570 GN=ADC PE=2 SV=1	[more]
P49726	1.5e-35	64.46	Arginine decarboxylase OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
O82475	7.0e-33	56.67	Arginine decarboxylase OS=Brassica juncea OX=3707 GN=ADC1 PE=2 SV=1	[more]
O23141	1.3e-31	55.46	Arginine decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=ADC2 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR43295:SF5	ARGININE DECARBOXYLASE	coord: 2..121
IPR002985	Arginine decarboxylase	PANTHER	PTHR43295	ARGININE DECARBOXYLASE	coord: 2..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016153.1	Lag0016153.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006527	arginine catabolic process
biological_process	GO:0033388	putrescine biosynthetic process from arginine
biological_process	GO:0009409	response to cold
biological_process	GO:0008295	spermidine biosynthetic process
molecular_function	GO:0008792	arginine decarboxylase activity