Lag0016135 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016135
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr12: 33756708 .. 33758305 (-)
RNA-Seq Expression	Lag0016135
Synteny	Lag0016135

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTCAGGCTTGAAAAGATCGATGCTTTTCTGAACGCAACCTTCGTACTCATTCGATTCCACGAGACAGCCGATTTGAAATGCTCGCCATCGATGTTCTCTCTAATAATCTCTCGCCATTTCCCTCGCGTCATCACAGCTCTGCAAATTATGCCTCCATTCTTCTCCCATTTCAACTGCCACCAAATCCACCAATGCCAGATTCCCATCCAATGCTTCCACAACACCATGAAGACTATGAATAAAAACTTTTATACTTCAATGACTCTCTCTCTTCTCCAACCCATCCATCAAATCCTCCTCGAATTTCATAATTCAAGTAACTTAACCATATCTTTTTACTTTTATTTCTGTGCCTTTTCTGTTCTCAAGAATCAAGATTCTTGTTTCTTTGGTCTTTTTTTAAATGGTTATCAAAGGGCTTGGAAGACAACGGCTTCGCCAATTGTCATTGCTACCTGCAAGAGAGGAGGATGTAGGCGAAATTGACTATACAACCTTCGTCTCAATTGATTCAAAAGTGTTTAAACGCATTGCAACGGAGTTAGATGAGTTCACTGGTGATATATAATTCTATATCTTCTTCCTTCTTGAAAAAAATTTGTCTTAACTTTCTAAAAACTTCTTATGGTCGTTCTTCGCAGCCCTTGTTACTCTAACGGATTCACAAGTCAAATTCCAAGTTGAAGCTAGGGAGATTACTCTTACCCAAGAGGTATATTATTACGTACAACCCATTAATCTTTTTTACTAAAGGTGTATTAGATAGAACCCATTTGAAAATTTAGGAATTGTATCCTCACTTTTGTGGGGAGGAGATACGAAATGGGAAGTTTAGGGTTGGGATAAAATTCAATTTTATATTTAATAGATGGTTTCATTTTTAAAAATTTTGAACAAGTCAGAGGTTTATTAGAGATAAAATTGAAAGTTAAATGATCTATTAAACATTTTTAAAGTTTAAGGACTCGTTAGACACAAAATTGAAAGTTCAAGAACCTATTAGAAACTTTTTAAAGTACAGTAACCAAATTAGCATAATCCTGAAACATCAGGGACTAAACTTATAATTTAACCATACTTAATTATAAGTTGCACGTGTGTCAAACATAGGGACATTTGATTATTGGGTGAAGAAGGATCCGTTTGAAATACTTTTAGTTTAAATGTTTTTCAAGAATACATTTTCTTTTAAACATTTTGCATAAAATTGTTTAGAATTTAAACACTCGTATGTTTGGTTACATAATTTGCTAGTTTTTATACCCAAGTTATAATATACTTAAAAAATCTTTTTAAAAAATTTGGTTGTAAGTGTTTCACTCGAAATAGTTTATTTCTCAATCTCATTCTTTAATAAGACATTTTCAATGGTTGCCAAACACTAGAATTTTTCTTAAAATGATTGTTGTTTTTAAAATTAATCACTTGAAAAGTTAAACCTGTGCAGGGAAGAGAATGTATAATTGGAGGCCTTGCAGCGGGAGAACAAACTCGATTCTTCATCGTTCTCAATCCCATAATTTTTTTTCGTGATTTGACAGATCAGTCAAAAAGGATATGGCTGTTCAAGTCAGCTAATTCCTGTAGTATAA

mRNA sequence

ATGCTCTTCAGGCTTGAAAAGATCGATGCTTTTCTGAACGCAACCTTCGTACTCATTCGATTCCACGAGACAGCCGATTTGAAATGCTCGCCATCGATGTTCTCTCTAATAATCTCTCGCCATTTCCCTCGCGTCATCACAGCTCTGCAAATTATGCCTCCATTCTTCTCCCATTTCAACTGCCACCAAATCCACCAATGCCAGATTCCCATCCAATGCTTCCACAACACCATGAAGACTATGAATAAAAACTTTTATACTTCAATGACTCTCTCTCTTCTCCAACCCATCCATCAAATCCTCCTCGAATTTCATAATTCAAGGCTTGGAAGACAACGGCTTCGCCAATTGTCATTGCTACCTGCAAGAGAGGAGGATGTAGGCGAAATTGACTATACAACCTTCGTCTCAATTGATTCAAAAGTGTTTAAACGCATTGCAACGGAGTTAGATGAGTTCACTGCCCTTGTTACTCTAACGGATTCACAAGTCAAATTCCAAGTTGAAGCTAGGGAGATTACTCTTACCCAAGAGATCAGTCAAAAAGGATATGGCTGTTCAAGTCAGCTAATTCCTGTAGTATAA

Coding sequence (CDS)

ATGCTCTTCAGGCTTGAAAAGATCGATGCTTTTCTGAACGCAACCTTCGTACTCATTCGATTCCACGAGACAGCCGATTTGAAATGCTCGCCATCGATGTTCTCTCTAATAATCTCTCGCCATTTCCCTCGCGTCATCACAGCTCTGCAAATTATGCCTCCATTCTTCTCCCATTTCAACTGCCACCAAATCCACCAATGCCAGATTCCCATCCAATGCTTCCACAACACCATGAAGACTATGAATAAAAACTTTTATACTTCAATGACTCTCTCTCTTCTCCAACCCATCCATCAAATCCTCCTCGAATTTCATAATTCAAGGCTTGGAAGACAACGGCTTCGCCAATTGTCATTGCTACCTGCAAGAGAGGAGGATGTAGGCGAAATTGACTATACAACCTTCGTCTCAATTGATTCAAAAGTGTTTAAACGCATTGCAACGGAGTTAGATGAGTTCACTGCCCTTGTTACTCTAACGGATTCACAAGTCAAATTCCAAGTTGAAGCTAGGGAGATTACTCTTACCCAAGAGATCAGTCAAAAAGGATATGGCTGTTCAAGTCAGCTAATTCCTGTAGTATAA

Protein sequence

MLFRLEKIDAFLNATFVLIRFHETADLKCSPSMFSLIISRHFPRVITALQIMPPFFSHFNCHQIHQCQIPIQCFHNTMKTMNKNFYTSMTLSLLQPIHQILLEFHNSRLGRQRLRQLSLLPAREEDVGEIDYTTFVSIDSKVFKRIATELDEFTALVTLTDSQVKFQVEAREITLTQEISQKGYGCSSQLIPVV

Homology

[Close]

BLAST of Lag0016135 vs. NCBI nr
Match: XP_031744051.1 (uncharacterized protein LOC116404769 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-42
Identity = 103/187 (55.08%), Postives = 133/187 (71.12%), Query Frame = 0


Query: 1   MLFRLEKIDAFLNATFVLIRFHETADLKCSPSMFSLIISRHFPRVITALQIMPPFFSHFN 60
           M  RLE I +F  A   L RFH+ ADLKCSP MFSLIISRHFP +IT+LQ++PP+F++F 
Sbjct: 1   MELRLENIHSFSKALLPLERFHDVADLKCSPKMFSLIISRHFPLIITSLQLLPPYFTNFF 60

Query: 61  C-HQIHQCQIPIQCFHNTMKTMNKNFYTSMTLSL--LQPIHQILLEFHNSRLGRQR---L 120
           C +QI Q QIPI+ F+N M TM + FY+SM L L   QP++QI L+F N R+   +    
Sbjct: 61  CQNQIFQYQIPIKSFYNIMNTMKQRFYSSMILFLHHQQPLNQIFLQFRNPRVVDDQDVLF 120

Query: 121 RQLSLLPAREEDVGEIDYTTFVSIDSKVFKRIATELDEFTALVTLTDSQVKFQVEAREIT 180
               L P+REEDVGEIDY  F SIDS V + IATELD++ ALVTLT+S+VKF V  +EI+
Sbjct: 121 HGFPLSPSREEDVGEIDYGIFFSIDSLVLRFIATELDDYDALVTLTNSEVKFSVNDKEIS 180

Query: 181 LTQEISQ 182
           L +E+ +
Sbjct: 181 LYKEVDE 187

[Close]

BLAST of Lag0016135 vs. NCBI nr
Match: XP_008458677.1 (PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-40
Identity = 102/184 (55.43%), Postives = 130/184 (70.65%), Query Frame = 0


Query: 1   MLFRLEKIDAFLNATFVLIRFHETADLKCSPSMFSLIISRHFPRVITALQIMPPFFSHFN 60
           M  +LE I +F  A   L RF++TADLKCSP MFSLIISRHFP +IT+LQI+PPFF++F 
Sbjct: 1   MELKLENIHSFSKALLPLQRFNDTADLKCSPKMFSLIISRHFPLIITSLQILPPFFTNFL 60

Query: 61  C-HQIHQCQIPIQCFHNTMKTMNKNFYTSMTLSL--LQPIHQILLEFHNSRLGRQR---L 120
           C +QI Q QIPI+ F++ M +M    Y+SMTLSL   QP+ QI L+F N R+   +    
Sbjct: 61  CQNQIFQFQIPIKSFYDIMNSMTHRLYSSMTLSLHPQQPLIQIALQFRNPRVVDDQEALY 120

Query: 121 RQLSLLPAREEDVGEIDYTTFVSIDSKVFKRIATELDEFTALVTLTDSQVKFQVEAREIT 179
               L P+REEDVGEIDY  F SI+S VF+ IA ELD+F ALVTLT+S+VKF V  ++I 
Sbjct: 121 HAFPLSPSREEDVGEIDYGIFFSIESLVFRFIAIELDDFDALVTLTNSEVKFSVNDKDII 180

[Close]

BLAST of Lag0016135 vs. NCBI nr
Match: XP_023514485.1 (uncharacterized protein LOC111778745 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 66/101 (65.35%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 78  MKTMNKNFYTSMTLSLLQPIHQILLEFHNSRLGRQRLRQLSLLPAREEDVGEIDYTTFVS 137
           MK M +  YTS+TLSL   ++Q+LL+FHNSR+G +++RQLSLLP+RE+DVGEIDY  FVS
Sbjct: 1   MKAMKRILYTSITLSLRNSLNQMLLQFHNSRIGEEQVRQLSLLPSREKDVGEIDYGIFVS 60

Query: 138 IDSKVFKRIATELDEFTALVTLTDSQVKFQVEAREITLTQE 179
           IDS+VF+RIAT+L++ TALVTLT+SQVKF +EA+EI+L +E
Sbjct: 61  IDSEVFERIATDLNDSTALVTLTNSQVKFTMEAKEISLVKE 101

[Close]

BLAST of Lag0016135 vs. NCBI nr
Match: XP_023000631.1 (uncharacterized protein LOC111494875 [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 66/101 (65.35%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 78  MKTMNKNFYTSMTLSLLQPIHQILLEFHNSRLGRQRLRQLSLLPAREEDVGEIDYTTFVS 137
           MK M +  YTS+TLSL   ++Q+LL+FHNSR+G +++RQLSLLP+RE+DVGEIDY  FVS
Sbjct: 1   MKAMKRILYTSITLSLRNSLNQMLLQFHNSRIGEEQVRQLSLLPSREKDVGEIDYGIFVS 60

Query: 138 IDSKVFKRIATELDEFTALVTLTDSQVKFQVEAREITLTQE 179
           IDS+VF+RIAT+L++  ALVTLT+SQVKF VEA+EI+L +E
Sbjct: 61  IDSEVFERIATDLNDSNALVTLTNSQVKFSVEAKEISLVEE 101

[Close]

BLAST of Lag0016135 vs. NCBI nr
Match: XP_022964074.1 (uncharacterized protein LOC111464210 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 66/101 (65.35%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 78  MKTMNKNFYTSMTLSLLQPIHQILLEFHNSRLGRQRLRQLSLLPAREEDVGEIDYTTFVS 137
           MK M +  YTS+TLSL   ++Q+LL+FHNSR+G +++RQLSLLP+RE+DVGEIDY  FVS
Sbjct: 1   MKAMKRILYTSITLSLRNSLNQMLLQFHNSRIGEEQVRQLSLLPSREKDVGEIDYGIFVS 60

Query: 138 IDSKVFKRIATELDEFTALVTLTDSQVKFQVEAREITLTQE 179
           IDS+VF+RIAT+L++  ALVTLT+SQVKF VEA+EI+L +E
Sbjct: 61  IDSEVFERIATDLNDSNALVTLTNSQVKFSVEAKEISLVEE 101

The following BLAST results are available for this feature:

BLAST of Lag0016135 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744051.1	1.1e-42	55.08	uncharacterized protein LOC116404769 [Cucumis sativus]	[more]
XP_008458677.1	2.4e-40	55.43	PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo]	[more]
XP_023514485.1	1.1e-26	65.35	uncharacterized protein LOC111778745 [Cucurbita pepo subsp. pepo]	[more]
XP_023000631.1	1.1e-26	65.35	uncharacterized protein LOC111494875 [Cucurbita maxima]	[more]
XP_022964074.1	1.1e-26	65.35	uncharacterized protein LOC111464210 [Cucurbita moschata]	[more]

BLAST of Lag0016135 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..189 e-value: 1.4E-15 score: 59.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016135.1	Lag0016135.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane