Lag0016122 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016122
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PMD domain-containing protein
Location	chr12: 33525554 .. 33525910 (+)
RNA-Seq Expression	Lag0016122
Synteny	Lag0016122

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTATTTCACTGAGCACCCTGATCCTGAGAAAAACTGCTTAGTAATCTTGAAGGATAGAGATCAACCTGTTGAAAATGACGTTATTCTTCCTGTAGGAGAGACAATGTGTGGTAATTTTAGGAGATCACAACCTTGTCTAGATGATTCTACCTTTTTGTCTAGATGGTCTGAAGAAAGACTTTTGAGTCACGACTCTTCCTTGAAGGCGTGGTTTTTAGAGTCTCCAATGCATAACAAGGTGCCAGGTGAAAATCCAGAATCAACTTTAGGTCGTCGCATTATTGGAGATGAACAAGTTCGCTGGGGTAGTTCAATAAGAATTCATGGAGAATTCTTTTATATCCCTAATTAA

mRNA sequence

ATGGTGTATTTCACTGAGCACCCTGATCCTGAGAAAAACTGCTTAGTAATCTTGAAGGATAGAGATCAACCTGTTGAAAATGACGTTATTCTTCCTGTAGGAGAGACAATGTGTGGTAATTTTAGGAGATCACAACCTTGTCTAGATGATTCTACCTTTTTGTCTAGATGGTCTGAAGAAAGACTTTTGAGTCACGACTCTTCCTTGAAGGCGTGGTTTTTAGAGTCTCCAATGCATAACAAGGTGCCAGGTGAAAATCCAGAATCAACTTTAGGTCGTCGCATTATTGGAGATGAACAAGTTCGCTGGGGTAGTTCAATAAGAATTCATGGAGAATTCTTTTATATCCCTAATTAA

Coding sequence (CDS)

ATGGTGTATTTCACTGAGCACCCTGATCCTGAGAAAAACTGCTTAGTAATCTTGAAGGATAGAGATCAACCTGTTGAAAATGACGTTATTCTTCCTGTAGGAGAGACAATGTGTGGTAATTTTAGGAGATCACAACCTTGTCTAGATGATTCTACCTTTTTGTCTAGATGGTCTGAAGAAAGACTTTTGAGTCACGACTCTTCCTTGAAGGCGTGGTTTTTAGAGTCTCCAATGCATAACAAGGTGCCAGGTGAAAATCCAGAATCAACTTTAGGTCGTCGCATTATTGGAGATGAACAAGTTCGCTGGGGTAGTTCAATAAGAATTCATGGAGAATTCTTTTATATCCCTAATTAA

Protein sequence

MVYFTEHPDPEKNCLVILKDRDQPVENDVILPVGETMCGNFRRSQPCLDDSTFLSRWSEERLLSHDSSLKAWFLESPMHNKVPGENPESTLGRRIIGDEQVRWGSSIRIHGEFFYIPN

Homology

[Close]

BLAST of Lag0016122 vs. NCBI nr
Match: XP_031745312.1 (uncharacterized protein LOC116405439 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-31
Identity = 65/118 (55.08%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 1   MVYFTEHPDPEKNCLVILKDRDQPVENDVILPVGETMCGNFRRSQPCLDDSTFLSRWSEE 60
           MV+FTE+ D  K CL+ILKD DQ +E  +ILPV E    N   SQ   D+  FL +WS+E
Sbjct: 1   MVHFTEYSDSTKRCLIILKDVDQSLEEGIILPVREGTYENIMDSQIPEDNFIFLPKWSKE 60

Query: 61  RLLSHDSSLKAWFLESPMHNKVPGENPESTLGRRIIGDEQVRWGSSIRIHGEFFYIPN 119
           R ++ +SSLK+WFLES +HNK P E+PESTLGRRII D ++RWG+ +++HGEF+Y+P+
Sbjct: 61  RFVNPNSSLKSWFLESSIHNKPPNEDPESTLGRRIINDPKIRWGNVLKVHGEFYYLPH 118

[Close]

BLAST of Lag0016122 vs. NCBI nr
Match: KAA0033822.1 (uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-27
Identity = 56/116 (48.28%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 1   MVYFTEHPDPEKNCLVILKDRDQPVENDVILPVGETMCGNFRRSQPCLDDSTFLSRWSEE 60
           MVYFTE+ D  K CL+ILKD +Q +++ ++LPV E    N   SQ   ++   L +WS+E
Sbjct: 1   MVYFTEYSDSTKRCLIILKDENQSLDSGIVLPVREEAFENIIDSQILKENFILLPKWSKE 60

Query: 61  RLLSHDSSLKAWFLESPMHNKVPGENPESTLGRRIIGDEQVRWGSSIRIHGEFFYI 117
           + ++ +S L +WFLES +HNK+P ENPESTL RR+I D + RWG+ +++HGEF+Y+
Sbjct: 61  KSVNPNSPLTSWFLESSIHNKIPNENPESTLSRRMISDSKFRWGTVLKVHGEFYYL 116

[Close]

BLAST of Lag0016122 vs. NCBI nr
Match: TYK21863.1 (uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-27
Identity = 56/116 (48.28%), Postives = 83/116 (71.55%), Query Frame = 0


Query: 1   MVYFTEHPDPEKNCLVILKDRDQPVENDVILPVGETMCGNFRRSQPCLDDSTFLSRWSEE 60
           MVYFTE+ D  K CL+ILKD +Q +++ ++LPV E    N   SQ   ++   L +WS+E
Sbjct: 1   MVYFTEYSDSTKRCLIILKDENQSLDSGIVLPVREEAFENIIDSQILKENFILLPKWSKE 60

Query: 61  RLLSHDSSLKAWFLESPMHNKVPGENPESTLGRRIIGDEQVRWGSSIRIHGEFFYI 117
           + ++ +S L +WFLES +HNK+P ENPESTL RR+I D + RWG+ +++HGEF+Y+
Sbjct: 61  KSVNPNSPLTSWFLESSIHNKIPNENPESTLSRRMISDSKFRWGTVLKVHGEFYYL 116

[Close]

BLAST of Lag0016122 vs. NCBI nr
Match: KAA0033523.1 (hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 7.0e-27
Identity = 55/116 (47.41%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MVYFTEHPDPEKNCLVILKDRDQPVENDVILPVGETMCGNFRRSQPCLDDSTFLSRWSEE 60
           MVYFTE+ D  K CL+ILKD +Q +++ ++LPV E    N   SQ   ++   L +WS+E
Sbjct: 110 MVYFTEYSDSTKRCLIILKDENQSLDSAIVLPVREGAFENIIDSQILKENFILLPKWSKE 169

Query: 61  RLLSHDSSLKAWFLESPMHNKVPGENPESTLGRRIIGDEQVRWGSSIRIHGEFFYI 117
           + ++ +S L +WFLES +HNK+P +N ESTLGRR+I D ++RWG+ +++HGEF+Y+
Sbjct: 170 KSVNSNSPLTSWFLESSIHNKIPNKNSESTLGRRMISDSKIRWGTVLKVHGEFYYL 225

[Close]

BLAST of Lag0016122 vs. NCBI nr
Match: TYJ95665.1 (hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 7.0e-27
Identity = 55/116 (47.41%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 1   MVYFTEHPDPEKNCLVILKDRDQPVENDVILPVGETMCGNFRRSQPCLDDSTFLSRWSEE 60
           MVYFTE+ D  K CL+ILKD +Q +++ ++LPV E    N   SQ   ++   L +WS+E
Sbjct: 1   MVYFTEYSDSTKRCLIILKDENQSLDSAIVLPVREGAFENIIDSQILKENFILLPKWSKE 60

Query: 61  RLLSHDSSLKAWFLESPMHNKVPGENPESTLGRRIIGDEQVRWGSSIRIHGEFFYI 117
           + ++ +S L +WFLES +HNK+P +N ESTLGRR+I D ++RWG+ +++HGEF+Y+
Sbjct: 61  KSVNSNSPLTSWFLESSIHNKIPNKNSESTLGRRMISDSKIRWGTVLKVHGEFYYL 116

The following BLAST results are available for this feature:

BLAST of Lag0016122 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745312.1	2.7e-31	55.08	uncharacterized protein LOC116405439 [Cucumis sativus]	[more]
KAA0033822.1	3.1e-27	48.28	uncharacterized protein E6C27_scaffold1735G00180 [Cucumis melo var. makuwa]	[more]
TYK21863.1	3.1e-27	48.28	uncharacterized protein E5676_scaffold836G00160 [Cucumis melo var. makuwa]	[more]
KAA0033523.1	7.0e-27	47.41	hypothetical protein E6C27_scaffold261G00660 [Cucumis melo var. makuwa]	[more]
TYJ95665.1	7.0e-27	47.41	hypothetical protein E5676_scaffold104G00970 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0016122 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016122.1	Lag0016122.1	mRNA