Lag0016089 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016089
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr12: 32977928 .. 32982387 (+)
RNA-Seq Expression	Lag0016089
Synteny	Lag0016089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACCAGAAACTCGATGGAGAGAGGATTCGAGGGCTTCGATGCGAGAGAGAAGAGAGGAGACGGTAGAATGGTGGATGAATTGGGGAAGCTATTCCTCACGAAAGAGCTTCTAATTTTGGAATGAAGGGGTTGAAATTGGTAATGCGATTGAAATTTCTTGGTACGAACACTTGGGTATTGAGAACAATGCTGGAATTGAGCAGATTGAAGAATTTGAGAAGCAAGAGCTTGAAGAAGGAGGTCGAAGGGAGACGGAGGATGGTGGGTTTGGAAGCATGGAGTGGCGAAATCGTCGCCCCAGCCGCAGCAACAGGCGGAAGGGAGATAGGTCCAGTGTAGATGGGGTTGATGAGGATGGTGATGAGAGGCCATTAGAGGCTCAAAGCTTGAAGCTGAGATTCTTCAAGGGCTTGGGTTTTGGGAAAAAATGGTGGTCTTCAACTTCAAGTGTGAGAAGGATCAGAAAGGGGTTTCCATTTTGATGAACTTTTGTGTGTGTGTTTTTTTTTCTAACGGAGAACAAATCGCCGCTGTTAGGGAAAGAGAAGAGAAGATAAAAAAAATAGAAGATGGAAGGAAGAAGAGAAGGGAAAGAGACGAGAAGATAAATAAAAAAAATAAAAATAAAAAATCATTGCCGGTCGCCGACGTCGGCGACAGGCAGCGGTCGGCTGTCTCTGGTGGCCGATGGTTGAAGAAGTAGAAGAGGAAGAGAGAGAGGGAAAAAGATATAAAAATAATAATAATTAAATATTTTTTATTTAATTTATTAGTATTTTATTTAAAAAAAATTTAAAAATAATTCTTTAATTAAAATAATAGTGCCACGTCAGCAACCTTTAGAACTTAACAGAAAAATAGACAGCAAGGACCAAAGTGCTCCTTATCTCAAACCTCAGAGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAAATGTAATTTAACTCAAACCTCAGGGACCAAAAGTGTATTTTTCCCAAAATGTTTTTTTCCTCCAAACTCGAACTTCTCCTCATGCCGTTTTCAAATGGCATTGGCAGAAATCATTTATGCCAACGCCGTTAAAATGGTGTCGGCAGATACTGTCATTTAAAAATTCGTTGGCATTTCTTCCCTTCAAAAGTCAAATTTCTCCCGACACCGTTTTCAAATGGTGTTGGTAGAAGTCACTTTTACCAATGCGATTAAAATGGCGTCAGGAAAGTTGAAAGGCGTTTAAAAGGTACCAACAGAAGTTCATTAAAATCCCTAATCACTTTTCTTCTTTCTCATTTCAGCCCACTACATTTTCCTCTCCTTTACAACTTTCCTCCTTGATTTGTCGCATCGTCTACCATTGTTGAATCATCTTGTCCTCGTCGACGCTACCTGTGCCATCTTGCCATCGTCGTCGCCACTAGCTAGCTATATCAGTGAGGTTTTGTTGGTTTTTTTTTCTATATTCTACGTTTTTTAGTTTTCAACGTAGAATTTTTGTAATTTTAAATTGGAATGGTTGTGTTGTTAGAATGTTTGTATATGTTAGCTTAAATATGGTGAATTTGATTGTTTGAGTTTGTGGATTTTGTTTGTTCTATTGAATTGAGAATTTTGGGGTTAATTTTGTTTGTTCATTTGAATTGAGGACTTGGAGATAATTTTGGTGGTTTTCCATTGAATTAGGGCCAATTATGGGAAGCTATAACAATAAGCTTAAAGGGAACAACATGGGAAAAAATGTTGTGAATTTGGTGAGTTTCAAAGTGAGAGAGGGAGGCGGGTTCGATTAATCATGTGCAGAAAGGGGGTTCAAAATTATGTGCCGCGAGGGGGGTTCAAAATGGTGTAATATGACTAAATTTGTAGGTATTGTGTGTTTGAAGTTTGATTTGGAGCTTATGTGAGATTAAAGTTTGATTCTATTCCCATTTGTGTGTTTAGAGACATCTATATGAACAAATATTTAATCAAGTGTTAGTGTATATAGTTTTTAAAGATAGATTAATTGTAGGTATGTAAGTATATAGGATTCATAGGATGGAAATTATTGTATGGTCTAGATCTTTTTCATTGGACTCATAGATGTCTTTAATGTGTTTGAAGTAAGTGTGTAGAGAAGAAAATAGAGTTGGAGAGAAGTAGTGAACTAAAGAAGAAAACATGTGTTTGCTTGGCAATATTGACTTCTTTATTCGACGACAAAGGTACATCGGCTGAAAATTTTGAGGTTTGTTTGTTTGAATTTGATTTTTAAAGTATTGTAGTTTATTGTTGTGAGATAGTTGACAAAAGTGAACTTACTTTATGTTTGCAAATTTCCCTCTTGGTAGGTTATCTTCCATCCAATAAAATGTCATACTAAAAAACTTTTGGGTTTATACTAAAATATTCAAAATGAGCAAAAAAAAAAAAAAAAAAATCTCAAAACCCACTCATTTAAATACAATTCGAGTTTTGCACAAAATTAAGTCTATCAAATGCACAAAGTGTCAATCATTCCATAAATCTCTCAAAACTCAATATTCTTTTTTTTTAAAAAAATCAATTTCTACTTTTTTCTTTTTTCTTCTTTGAGATCTCACCAAATTTTTGTACCAACTGTTATGGGTAATTCTAGCATGAGGGAATTTCCGGAAGAAAGAGGCCTTGGGCCCAATCCAAGCCAGCCCACGAAGAGAAGACCGCCCAGGAAGGAAAAACCATCTCCTCAGCCTCGACATTAGGCTGAGGCCGAGGAGCTGATGCCGAGGCCGACCAGGCGGTTAGGCCCAATGACCACCTGGGTCGTTTGGGGAAGCCTTCTTGGGCCCAGGGAAGGCAGGGTTCGTGAGGTAGGAGTCAGCTTACGACAAGGAGAGGCGAAAAACCCTAATGGGGAGGAGATATAAAAGGTCCTTTGGGGACCTAGGTAAGGGGATCGAAAATCTAAATTCCTAACTCCAGACTTTTACAGTATTACGATTGTTTTGTCGAATTCTTCCAATCACTGACTTAGGCATCGGAGCATGTGCGGCAAGCATCACATCGTTGTGCAGTGCTTACTTTCTTTTTTGCAGGTCACGTCTTCCCCGGATTCAAACAAATTCACTATTGGTGTCACGTGAAGGCCAGGTGAGCGTTTGGCCGGATTTTGCCATCAACAGTTGGCGCCGTCTGTGGGGAAGAAAGTTGGCTTGTGAGCATTGCACATTGGTGTGAAATACTGCTGATAGGAGAATGGAGAAGGAAAATCCAGTGGGCGAGGGAGGTCCTCGGCCTCAGGCTAATGCACAGGGCATGGAGATGGAAGTTCTCAGAGGAAGAGTAAATGAGATGGGGCAGAGTTTGGCCGAGATTCTGAGTATCCTGAGGCAACCGAATCCTAGCACGAAGTACCAAAAGAGTCTCGTGCGTGATCGAGAGAAAGGAAAAGGGATCTTAGATGAAGAAGAAGGGGAAACAAACAGTTCTACTAGCAAATTGCGAAAACCAGAGGGTGGCAAAGAATTTGACTTGAAGGAGCCAGGGTCGAGTAAATGGGTAGAGCGTAAAGGTGCACCTGACATCCCAGACGAAACCAGTACGTTAGGTTCGCGCATGAGGACTGATGCCGATGTCGAGGCCAAGATCCGGGCGAAGATTGAACTTGAGATCCAGGCCGAGGTTGAGGCTAAGTTGAGGGCCAAAGCCGAAGTCGCAGCCATAGCTAAGGTCGAGGCCGAGGTCGAGGTCAGGGCTAGGGCTAGGATACAGGGAAACACACAACCCAGAGATGCAGACAAAGAAGATTTAGAGGATTTAATAGGTCAGGCCAATCCATCTTTTGTCGACGAGATCATCCGGGCAAAAGTTCCACACAAGTTTAAGTTGCCGACCTTTCCACAGTATGATGGGAAGAAAGATCCGGTTCAACAATTGGATACCTACTGATCTTGGATGGAGTTTCATAGGGCTTCTGAGGCAACCAAGTGTCGTGCATTTTCTCTGACCTTGACCAGAATAGCACGACAATGGTACAACAAGTTGCCACGCAAGTCCATTGGCTCATTCAAGGAGTTGTCTTGCGTTTTTGCCAAACAATTCTTGGGGGCAAGGGATCGAAGGAAACAACAATTTAATTTGTTGACTGTCAAACAAAGGTCGGGGGAAAGTTTGAATGGGTATATCACGTGTTTCAGTAATGAGGTGGTACAGGTGGAAGGATATGATGATGAAGTGGCTCTAACGGCGGTTATCTCAGGGTTGCAAGACGAGAAATTGTTAAACTCCATAGGAGAGGATCAACCACGTACATATGTCGAGTTTGTCTCCAGGACACAAAAATACATAAACGCAGAGGAATTAATGAAGTCCAAGCGTGCAGAAAGGGAAGCGCAGAGGGTGACCACTATTAACAAGGGCAAAAGGAAAGAAGAAAGAAGCAAGAGGCCGCGGGGGGAGGATGGAGACCGAGATCGTCACAGTTGCTCCTCTAGCCGAAGTCGTGTAGACTAG

mRNA sequence

ATGAGAACCAGAAACTCGATGGAGAGAGGATTCGAGGGCTTCGATGCGAGAGAGAAGAGAGGAGACGGGGTTGAAATTGGTAATGCGATTGAAATTTCTTGGTACGAACACTTGGGTATTGAGAACAATGCTGGAATTGAGCAGATTGAAGAATTTGAGAAGCAAGAGCTTGAAGAAGGAGGTCGAAGGGAGACGGAGGATGGTGGGTTTGGAAGCATGGAGTGGCGAAATCGTCGCCCCAGCCGCAGCAACAGGCGGAAGGGAGATAGGTCCAGTGTAGATGGGGTTGATGAGGATGGTGATGAGAGGCCATTAGAGGCTCAAAGCTTGAAGCTGAGATTCTTCAAGGGCTTGGGTTTTGGGAAAAAATGGTGGTCTTCAACTTCAACCCACTACATTTTCCTCTCCTTTACAACTTTCCTCCTTGATTTGTCGCATCGTCTACCATTGTTGAATCATCTTGTCCTCGTCGACGCTACCTGTGCCATCTTGCCATCGTCGTCGCCACTAGCTAGCTATATCAGTGAGTGTGTAGAGAAGAAAATAGAGTTGGAGAGAAGTAGTGAACTAAAGAAGAAAACATGTGTTTGCTTGGCAATATTGACTTCTTTATTCGACGACAAAGGTACATCGGCTGAAAATTTTGAGGCTGAGGCCGAGGAGCTGATGCCGAGGCCGACCAGGCGGTTAGGCCCAATGACCACCTGGGTCGTTTGGGGAAGCCTTCTTGGGCCCAGGGAAGGCAGGGTTCGTGAGGCATCGGAGCATGTGCGGCAAGCATCACATCGTTGTGCAGTGCTTACTTTCTTTTTTGCAGGTCACGTCTTCCCCGGATTCAAACAAATTCACTATTGGTGTCACGTGAAGGCCAGGAGAATGGAGAAGGAAAATCCAGTGGGCGAGGGAGGTCCTCGGCCTCAGGCTAATGCACAGGGCATGGAGATGGAAGTTCTCAGAGGAAGAGTAAATGAGATGGGGCAGAGTTTGGCCGAGATTCTGAGTATCCTGAGGCAACCGAATCCTAGCACGAAGTACCAAAAGAGTCTCGTGCGTGATCGAGAGAAAGGAAAAGGGATCTTAGATGAAGAAGAAGGGGAAACAAACAGTTCTACTAGCAAATTGCGAAAACCAGAGGGTGGCAAAGAATTTGACTTGAAGGAGCCAGGGTCGAGTAAATGGGTAGAGCGTAAAGGTGCACCTGACATCCCAGACGAAACCAGTACGTTAGGTTCGCGCATGAGGACTGATGCCGATGTCGAGGCCAAGATCCGGGCGAAGATTGAACTTGAGATCCAGGCCGAGGTTGAGGCTAAGTTGAGGGCCAAAGCCGAAGTCGCAGCCATAGCTAAGGTCGAGGCCGAGGTCGAGGTCAGGGCTAGGGCTAGGATACAGGGAAACACACAACCCAGAGATGCAGACAAAGAAGATTTAGAGGATTTAATAGGTCAGGCCAATCCATCTTTTGTCGACGAGATCATCCGGGCAAAAGTTCCACACAAGTTTAAGTTGCCGACCTTTCCACAGGCTTCTGAGGCAACCAAGTGTCGTGCATTTTCTCTGACCTTGACCAGAATAGCACGACAATGGTACAACAAGTTGCCACGCAAGTCCATTGGCTCATTCAAGGAGTTGTCTTGCGTTTTTGCCAAACAATTCTTGGGGGCAAGGGATCGAAGGAAACAACAATTTAATTTGTTGACTGTCAAACAAAGGTCGGGGGAAAGTTTGAATGGGTATATCACGTGTTTCAGTAATGAGGTGGTACAGGTGGAAGGATATGATGATGAAGTGGCTCTAACGGCGGTTATCTCAGGGTTGCAAGACGAGAAATTGTTAAACTCCATAGGAGAGGATCAACCACGTACATATGTCGAGTTTGTCTCCAGGACACAAAAATACATAAACGCAGAGGAATTAATGAAGTCCAAGCGTGCAGAAAGGGAAGCGCAGAGGGTGACCACTATTAACAAGGGCAAAAGGAAAGAAGAAAGAAGCAAGAGGCCGCGGGGGGAGGATGGAGACCGAGATCGTCACAGTTGCTCCTCTAGCCGAAGTCGTGTAGACTAG

Coding sequence (CDS)

ATGAGAACCAGAAACTCGATGGAGAGAGGATTCGAGGGCTTCGATGCGAGAGAGAAGAGAGGAGACGGGGTTGAAATTGGTAATGCGATTGAAATTTCTTGGTACGAACACTTGGGTATTGAGAACAATGCTGGAATTGAGCAGATTGAAGAATTTGAGAAGCAAGAGCTTGAAGAAGGAGGTCGAAGGGAGACGGAGGATGGTGGGTTTGGAAGCATGGAGTGGCGAAATCGTCGCCCCAGCCGCAGCAACAGGCGGAAGGGAGATAGGTCCAGTGTAGATGGGGTTGATGAGGATGGTGATGAGAGGCCATTAGAGGCTCAAAGCTTGAAGCTGAGATTCTTCAAGGGCTTGGGTTTTGGGAAAAAATGGTGGTCTTCAACTTCAACCCACTACATTTTCCTCTCCTTTACAACTTTCCTCCTTGATTTGTCGCATCGTCTACCATTGTTGAATCATCTTGTCCTCGTCGACGCTACCTGTGCCATCTTGCCATCGTCGTCGCCACTAGCTAGCTATATCAGTGAGTGTGTAGAGAAGAAAATAGAGTTGGAGAGAAGTAGTGAACTAAAGAAGAAAACATGTGTTTGCTTGGCAATATTGACTTCTTTATTCGACGACAAAGGTACATCGGCTGAAAATTTTGAGGCTGAGGCCGAGGAGCTGATGCCGAGGCCGACCAGGCGGTTAGGCCCAATGACCACCTGGGTCGTTTGGGGAAGCCTTCTTGGGCCCAGGGAAGGCAGGGTTCGTGAGGCATCGGAGCATGTGCGGCAAGCATCACATCGTTGTGCAGTGCTTACTTTCTTTTTTGCAGGTCACGTCTTCCCCGGATTCAAACAAATTCACTATTGGTGTCACGTGAAGGCCAGGAGAATGGAGAAGGAAAATCCAGTGGGCGAGGGAGGTCCTCGGCCTCAGGCTAATGCACAGGGCATGGAGATGGAAGTTCTCAGAGGAAGAGTAAATGAGATGGGGCAGAGTTTGGCCGAGATTCTGAGTATCCTGAGGCAACCGAATCCTAGCACGAAGTACCAAAAGAGTCTCGTGCGTGATCGAGAGAAAGGAAAAGGGATCTTAGATGAAGAAGAAGGGGAAACAAACAGTTCTACTAGCAAATTGCGAAAACCAGAGGGTGGCAAAGAATTTGACTTGAAGGAGCCAGGGTCGAGTAAATGGGTAGAGCGTAAAGGTGCACCTGACATCCCAGACGAAACCAGTACGTTAGGTTCGCGCATGAGGACTGATGCCGATGTCGAGGCCAAGATCCGGGCGAAGATTGAACTTGAGATCCAGGCCGAGGTTGAGGCTAAGTTGAGGGCCAAAGCCGAAGTCGCAGCCATAGCTAAGGTCGAGGCCGAGGTCGAGGTCAGGGCTAGGGCTAGGATACAGGGAAACACACAACCCAGAGATGCAGACAAAGAAGATTTAGAGGATTTAATAGGTCAGGCCAATCCATCTTTTGTCGACGAGATCATCCGGGCAAAAGTTCCACACAAGTTTAAGTTGCCGACCTTTCCACAGGCTTCTGAGGCAACCAAGTGTCGTGCATTTTCTCTGACCTTGACCAGAATAGCACGACAATGGTACAACAAGTTGCCACGCAAGTCCATTGGCTCATTCAAGGAGTTGTCTTGCGTTTTTGCCAAACAATTCTTGGGGGCAAGGGATCGAAGGAAACAACAATTTAATTTGTTGACTGTCAAACAAAGGTCGGGGGAAAGTTTGAATGGGTATATCACGTGTTTCAGTAATGAGGTGGTACAGGTGGAAGGATATGATGATGAAGTGGCTCTAACGGCGGTTATCTCAGGGTTGCAAGACGAGAAATTGTTAAACTCCATAGGAGAGGATCAACCACGTACATATGTCGAGTTTGTCTCCAGGACACAAAAATACATAAACGCAGAGGAATTAATGAAGTCCAAGCGTGCAGAAAGGGAAGCGCAGAGGGTGACCACTATTAACAAGGGCAAAAGGAAAGAAGAAAGAAGCAAGAGGCCGCGGGGGGAGGATGGAGACCGAGATCGTCACAGTTGCTCCTCTAGCCGAAGTCGTGTAGACTAG

Protein sequence

MRTRNSMERGFEGFDAREKRGDGVEIGNAIEISWYEHLGIENNAGIEQIEEFEKQELEEGGRRETEDGGFGSMEWRNRRPSRSNRRKGDRSSVDGVDEDGDERPLEAQSLKLRFFKGLGFGKKWWSSTSTHYIFLSFTTFLLDLSHRLPLLNHLVLVDATCAILPSSSPLASYISECVEKKIELERSSELKKKTCVCLAILTSLFDDKGTSAENFEAEAEELMPRPTRRLGPMTTWVVWGSLLGPREGRVREASEHVRQASHRCAVLTFFFAGHVFPGFKQIHYWCHVKARRMEKENPVGEGGPRPQANAQGMEMEVLRGRVNEMGQSLAEILSILRQPNPSTKYQKSLVRDREKGKGILDEEEGETNSSTSKLRKPEGGKEFDLKEPGSSKWVERKGAPDIPDETSTLGSRMRTDADVEAKIRAKIELEIQAEVEAKLRAKAEVAAIAKVEAEVEVRARARIQGNTQPRDADKEDLEDLIGQANPSFVDEIIRAKVPHKFKLPTFPQASEATKCRAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRKQQFNLLTVKQRSGESLNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQPRTYVEFVSRTQKYINAEELMKSKRAEREAQRVTTINKGKRKEERSKRPRGEDGDRDRHSCSSSRSRVD

Homology

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BLAST of Lag0016089 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 143.3 bits (360), Expect = 7.9e-30
Identity = 97/235 (41.28%), Postives = 133/235 (56.60%), Query Frame = 0


Query: 466 NTQPRDADKE---DLEDLIGQANPSFVDEIIRAKVPHKFKLPTFPQ-------------- 525
           +++ R + KE   DLE+L+ QA+  F +EI+R KVP KFKLPT  Q              
Sbjct: 155 SSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAY 214

Query: 526 --------ASEATKCRAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRK 585
                    SEA +CR FS TL   AR W+ +L R SI SFK L+  F  QF+G R R +
Sbjct: 215 REWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSR 274

Query: 586 QQFNLLTVKQRSGESLNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQP 645
               LLT+KQR+ ESL  Y+  F+ E +QVEG  D V+L A +SG++DE L  S G+  P
Sbjct: 275 PVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTP 334

Query: 646 RTYVEFVSRTQKYINAEELMKSKRAEREAQRVTTINKGKRKEERSKRPRGEDGDR 676
            T+ E +SR Q+Y++A E   SKR E + +R  T  K +R  ++ +  R E  DR
Sbjct: 335 NTFSEALSRAQRYMSAGEFFYSKR-EPDGKR--TDPKRERSGDKPQGSRWEKRDR 386

[Close]

BLAST of Lag0016089 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-28
Identity = 94/235 (40.00%), Postives = 132/235 (56.17%), Query Frame = 0


Query: 466 NTQPRDADKE---DLEDLIGQANPSFVDEIIRAKVPHKFKLPTFPQ-------------- 525
           +++ R   KE   DLE+L+GQA+  F +EI+R KVP KFKLPT                 
Sbjct: 60  SSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAY 119

Query: 526 --------ASEATKCRAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRK 585
                    S+A +CR FS TL   AR W+ +L R SI SFK L+  F  QF+G R R +
Sbjct: 120 REWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSR 179

Query: 586 QQFNLLTVKQRSGESLNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQP 645
               LLT+KQR+ ESL+ Y+  F+ E +Q+EG  D V+L A +SG++DE L  S  +  P
Sbjct: 180 PVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTP 239

Query: 646 RTYVEFVSRTQKYINAEELMKSKRAEREAQRVTTINKGKRKEERSKRPRGEDGDR 676
            T+ E +SR Q+Y++A E   SKR E + +R  T  K +R  ++ +  R E  DR
Sbjct: 240 STFSEALSRAQRYMSASEFCYSKR-EPDGKR--TDQKRERSGDKPQGSRWEKRDR 291

[Close]

BLAST of Lag0016089 vs. NCBI nr
Match: XP_024047974.1 (uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 uncharacterized protein LOC112498174 [Citrus sinensis])

HSP 1 Score: 135.6 bits (340), Expect = 1.6e-27
Identity = 85/217 (39.17%), Postives = 119/217 (54.84%), Query Frame = 0


Query: 478 EDLIGQANPSFVDEIIRAKVPHKFKLPT--------FPQ--------------ASEATKC 537
           +D++ ++ P F  EI+RA+ P  F+LP+        +P                S A  C
Sbjct: 9   DDMMAESEPPFTQEIMRARYPSGFRLPSIEPYDGQKYPMEHVELYRSLMEVQGVSSAILC 68

Query: 538 RAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRKQQFNLLTVKQRSGES 597
           RAF LTL+R AR+W+  L   SI SF EL   F   F  AR R K    LLTVKQ  GES
Sbjct: 69  RAFPLTLSRAARRWFRMLRPNSISSFNELIREFTMHFHSARQRGKPVTYLLTVKQHEGES 128

Query: 598 LNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQPRTYVEFVSRTQKYIN 657
           L  YI  ++ E  QV+GYDD VAL+ ++ GLQ  +L  S+ ++ P TY E +SR +KY N
Sbjct: 129 LREYIQRYNAETTQVDGYDDGVALSGLMEGLQMGRLWWSVAKNPPSTYSEMLSRAEKYAN 188

Query: 658 AEELMKSKRAEREAQRVTTINKGKRKEERSKRPRGED 673
           AEE  +SK+   + +  ++ NK  +++ R  RP   D
Sbjct: 189 AEERFQSKKGREKGE--SSKNKKTKEDRRDIRPGRPD 223

[Close]

BLAST of Lag0016089 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-26
Identity = 80/214 (37.38%), Postives = 113/214 (52.80%), Query Frame = 0


Query: 477 LEDLIGQANPSFVDEIIRAKVPHKFKLPTFPQ----------------------ASEATK 536
           L+D+  +  P F  +I+ AK P +F LP                          AS+A  
Sbjct: 166 LDDVTAEHEPPFTSDIMVAKYPPRFHLPQMEPYDGQRDPTEHLELYRTLMEVQGASQAIL 225

Query: 537 CRAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRKQQFNLLTVKQRSGE 596
           CRAF LTL   AR+W+ +L   SI SF +LS  F   F  AR R K    LLTVKQ+ GE
Sbjct: 226 CRAFPLTLVGAARRWFRRLQPHSISSFGDLSREFTSHFRSARQRGKPVTYLLTVKQQEGE 285

Query: 597 SLNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQPRTYVEFVSRTQKYI 656
           +L  YI  ++NE+ QV+GYDD +AL+ ++ GL+  KL  S+ +  P +Y E ++R +KY 
Sbjct: 286 TLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMGKLWWSVSKRPPTSYSEMLARAEKYA 345

Query: 657 NAEELMKSKRAEREAQRVTTINKGKRKEERSKRP 669
           NAEE  K++  E+         K  ++E R  RP
Sbjct: 346 NAEERFKNRNQEKGESTKGKKKKDDQRERRVVRP 379

[Close]

BLAST of Lag0016089 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 7.7e-25
Identity = 74/164 (45.12%), Postives = 103/164 (62.80%), Query Frame = 0


Query: 511 EATKCRAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRKQQFNLLTVKQ 570
           EA +CR FS TLT  AR W+ +L R SI SFKEL+  F  QF+G R + K    LLT+KQ
Sbjct: 41  EAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQ 100

Query: 571 RSGESLNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQPRTYVEFVSRT 630
           ++ ESL  Y+  F+ E +QVEG  D VAL A +SG++DE+L+ S G+  P T++E +SR 
Sbjct: 101 KATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRA 160

Query: 631 QKYINAEELMKSKRAEREAQRVTTINKGKRKEERSKRPRGEDGD 675
           QKY++A EL+   R + E +R     K +R+ E+  R   E  D
Sbjct: 161 QKYMSAGELIHLSR-DLERERANYSTKRERRGEKRHRSSWERSD 203

[Close]

BLAST of Lag0016089 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.8e-30
Identity = 97/235 (41.28%), Postives = 133/235 (56.60%), Query Frame = 0


Query: 466 NTQPRDADKE---DLEDLIGQANPSFVDEIIRAKVPHKFKLPTFPQ-------------- 525
           +++ R + KE   DLE+L+ QA+  F +EI+R KVP KFKLPT  Q              
Sbjct: 155 SSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAY 214

Query: 526 --------ASEATKCRAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRK 585
                    SEA +CR FS TL   AR W+ +L R SI SFK L+  F  QF+G R R +
Sbjct: 215 REWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSR 274

Query: 586 QQFNLLTVKQRSGESLNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQP 645
               LLT+KQR+ ESL  Y+  F+ E +QVEG  D V+L A +SG++DE L  S G+  P
Sbjct: 275 PVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTP 334

Query: 646 RTYVEFVSRTQKYINAEELMKSKRAEREAQRVTTINKGKRKEERSKRPRGEDGDR 676
            T+ E +SR Q+Y++A E   SKR E + +R  T  K +R  ++ +  R E  DR
Sbjct: 335 NTFSEALSRAQRYMSAGEFFYSKR-EPDGKR--TDPKRERSGDKPQGSRWEKRDR 386

[Close]

BLAST of Lag0016089 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.4e-29
Identity = 94/235 (40.00%), Postives = 132/235 (56.17%), Query Frame = 0


Query: 466 NTQPRDADKE---DLEDLIGQANPSFVDEIIRAKVPHKFKLPTFPQ-------------- 525
           +++ R   KE   DLE+L+GQA+  F +EI+R KVP KFKLPT                 
Sbjct: 60  SSEKRHNQKEKGFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAY 119

Query: 526 --------ASEATKCRAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRK 585
                    S+A +CR FS TL   AR W+ +L R SI SFK L+  F  QF+G R R +
Sbjct: 120 REWMDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSR 179

Query: 586 QQFNLLTVKQRSGESLNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQP 645
               LLT+KQR+ ESL+ Y+  F+ E +Q+EG  D V+L A +SG++DE L  S  +  P
Sbjct: 180 PVAYLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTP 239

Query: 646 RTYVEFVSRTQKYINAEELMKSKRAEREAQRVTTINKGKRKEERSKRPRGEDGDR 676
            T+ E +SR Q+Y++A E   SKR E + +R  T  K +R  ++ +  R E  DR
Sbjct: 240 STFSEALSRAQRYMSASEFCYSKR-EPDGKR--TDQKRERSGDKPQGSRWEKRDR 291

[Close]

BLAST of Lag0016089 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.7e-25
Identity = 74/164 (45.12%), Postives = 103/164 (62.80%), Query Frame = 0


Query: 511 EATKCRAFSLTLTRIARQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRKQQFNLLTVKQ 570
           EA +CR FS TLT  AR W+ +L R SI SFKEL+  F  QF+G R + K    LLT+KQ
Sbjct: 41  EAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQ 100

Query: 571 RSGESLNGYITCFSNEVVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQPRTYVEFVSRT 630
           ++ ESL  Y+  F+ E +QVEG  D VAL A +SG++DE+L+ S G+  P T++E +SR 
Sbjct: 101 KATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRA 160

Query: 631 QKYINAEELMKSKRAEREAQRVTTINKGKRKEERSKRPRGEDGD 675
           QKY++A EL+   R + E +R     K +R+ E+  R   E  D
Sbjct: 161 QKYMSAGELIHLSR-DLERERANYSTKRERRGEKRHRSSWERSD 203

[Close]

BLAST of Lag0016089 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.3e-25
Identity = 85/220 (38.64%), Postives = 118/220 (53.64%), Query Frame = 0


Query: 489 VDEIIRAKVPHKFKLPTFPQ----------------------ASEATKCRAFSLTLTRIA 548
           ++EI++ KVP KFKLPT  Q                       SEA KCR FS TL+  A
Sbjct: 1   MEEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSA 60

Query: 549 RQWYNKLPRKSIGSFKELSCVFAKQFLGARDRRKQQFNLLTVKQRSGESLNGYITCFSNE 608
           R W+ +L R SI SFK L+  F  QF+G R R +    LLT+KQR+ ESL+ Y+  F+ E
Sbjct: 61  RVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEE 120

Query: 609 VVQVEGYDDEVALTAVISGLQDEKLLNSIGEDQPRTYVEFVSRTQKYINAEELMKSKRAE 668
            +QVEG  + V+L A +S ++DE L  S G+  P T+ E +SR QKY++A E   SKR  
Sbjct: 121 KLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREP 180

Query: 669 REAQRVTTINKGKRKEERSKRPRGEDGDRDRHSCSSSRSR 687
                     +GK+ ++  +R     GD+ + S    R R
Sbjct: 181 ----------EGKQSDQNRER----SGDKPQWSRWEKRDR 206

[Close]

BLAST of Lag0016089 vs. ExPASy TrEMBL
Match: A0A7J0DWQ5 (Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_00g0089600 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.5e-22
Identity = 75/215 (34.88%), Postives = 115/215 (53.49%), Query Frame = 0


Query: 477 LEDLIGQANPSFVDEIIRAKVPHKFKLPTFPQASEATKCRAFSLTLTRIARQWYNKLPRK 536
           ++ L+ Q +P F + ++R ++  KFKLPT     +   C+AFS TL   AR W+ KL   
Sbjct: 119 VDALVRQTDPPFTERVLRTRISSKFKLPT-----QLVMCKAFSATLKGPARSWFRKLSPG 178

Query: 537 SIGSFKELSCVFAKQFLGARDRRKQQFNLLTVKQRSGESLNGYITCFSNEVVQVEGYDDE 596
           ++ SF ELS +F   F+  R+R+K   +L TV Q+  ESL  ++  F+  V+ VE   D+
Sbjct: 179 TVDSFGELSRLFVANFMSCRNRQKNASHLFTVHQKETESLKDFVKRFNQAVLDVEDPSDK 238

Query: 597 VALTAVISGLQDEKLLNSIGEDQPRTYVEFVSRTQKYINAEELMKSKRAER-----EAQR 656
           V + A++ GL+   L +S+ ++ P T     S+  KYI AEEL ++KR  R       + 
Sbjct: 239 VIIMAMMEGLRPGPLFDSLSKNVPETLSALHSKADKYIAAEELAEAKRRRRGKEDHNRKE 298

Query: 657 VTTINKGKRKEERSKRPRGEDGDRDRHSCSSSRSR 687
             T     R+E R KRP     DRD    ++ R R
Sbjct: 299 PDTRRVDYREEMRYKRP-----DRDSKRSNNRRPR 323

The following BLAST results are available for this feature:

BLAST of Lag0016089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	7.9e-30	41.28	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022159109.1	1.9e-28	40.00	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_024047974.1	1.6e-27	39.17	uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 unchara...	[more]
XP_024041095.1	1.8e-26	37.38	uncharacterized protein LOC112098853 [Citrus clementina]	[more]
XP_022158344.1	7.7e-25	45.12	uncharacterized protein LOC111024851 [Momordica charantia]	[more]

BLAST of Lag0016089 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0016089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	3.8e-30	41.28	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1E1E7	9.4e-29	40.00	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DZ49	3.7e-25	45.12	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D7D2	6.3e-25	38.64	uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A7J0DWQ5	8.5e-22	34.88	Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_00g0089600 PE=4 SV=1	[more]

BLAST of Lag0016089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 517..608 e-value: 1.8E-10 score: 40.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 344..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 643..688
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 347..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016089.1	Lag0016089.1	mRNA