Lag0016063 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016063
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr12: 32684456 .. 32685166 (-)
RNA-Seq ExpressionLag0016063
SyntenyLag0016063
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCCAGAGAACAACGCAAGTCTCACATCAACCTCTTAACTATCAAACAGCAGCCAGGTGAGAGCTTGCGCGATTATATAACACGTTTTAACGAGGAAGCACTACAGGTTGAGGGATACAGTGAAGGAGCAGCCCTAGTAGCCATCACATCCGGACTAGAAGGCGAGAAACTTCTTAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCAGAGTTTGTCTCTCGGGCACAAAAATACATGAGCGTATAGGAGTTGCTCAAGTCAAAGAAGTCGAAACGAGAACACAAGAGGTCTTCTTCATCTGACCACGACAGTAAAAAGGACAAAAGGCAGCGAATAGACGAAGGAGCCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAAATACACCCCTACTTCAATCCCACTGGAGCAAATCTTGATGGAGATACAAAATACAAACCTTCTCAACGTGCCTAGAAAGCTGAAGTCAAATCCTGATAACAGAGACAAAAGTCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTACATTCAGCTAAAGGACGAAATTGAAGCGTTGATTCGGAATGGATACCTGAAGGAGTTCACCACAAAGGCCGAGGCAGACCAGAGATGGCCGAGGCCGACCAGAGATGACGCAGGCAAAGATAATGGTGGACCTCCTCTGGAAATCCGTTGA

mRNA sequence

ATGGGAGCCAGAGAACAACGCAAGTCTCACATCAACCTCTTAACTATCAAACAGCAGCCAGGTGAGAGCTTGCGCGATTATATAACACGTTTTAACGAGGAAGCACTACAGGAGTTGCTCAAGTCAAAGAAGTCGAAACGAGAACACAAGAGGTCTTCTTCATCTGACCACGACAGTAAAAAGGACAAAAGGCAGCGAATAGACGAAGGAGCCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAAATACACCCCTACTTCAATCCCACTGGAGCAAATCTTGATGGAGATACAAAATACAAACCTTCTCAACGTGCCTAGAAAGCTGAAGTCAAATCCTGATAACAGAGACAAAAGTCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTACATTCAGCTAAAGGACGAAATTGAAGCGTTGATTCGGAATGGATACCTGAAGGAGTTCACCACAAAGGCCGAGGCAGACCAGAGATGGCCGAGGCCGACCAGAGATGACGCAGGCAAAGATAATGGTGGACCTCCTCTGGAAATCCGTTGA

Coding sequence (CDS)

ATGGGAGCCAGAGAACAACGCAAGTCTCACATCAACCTCTTAACTATCAAACAGCAGCCAGGTGAGAGCTTGCGCGATTATATAACACGTTTTAACGAGGAAGCACTACAGGAGTTGCTCAAGTCAAAGAAGTCGAAACGAGAACACAAGAGGTCTTCTTCATCTGACCACGACAGTAAAAAGGACAAAAGGCAGCGAATAGACGAAGGAGCCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAAATACACCCCTACTTCAATCCCACTGGAGCAAATCTTGATGGAGATACAAAATACAAACCTTCTCAACGTGCCTAGAAAGCTGAAGTCAAATCCTGATAACAGAGACAAAAGTCAGTATTGTCTCTTCCATCGAGATCATGGACATTCAACTAGGAACTACATTCAGCTAAAGGACGAAATTGAAGCGTTGATTCGGAATGGATACCTGAAGGAGTTCACCACAAAGGCCGAGGCAGACCAGAGATGGCCGAGGCCGACCAGAGATGACGCAGGCAAAGATAATGGTGGACCTCCTCTGGAAATCCGTTGA

Protein sequence

MGAREQRKSHINLLTIKQQPGESLRDYITRFNEEALQELLKSKKSKREHKRSSSSDHDSKKDKRQRIDEGARGRPDQGDYLKKFEKYTPTSIPLEQILMEIQNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDAGKDNGGPPLEIR
Homology
BLAST of Lag0016063 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-23
Identity = 86/234 (36.75%), Postives = 119/234 (50.85%), Query Frame = 0

Query: 1   MGAREQRKSHINLLTIKQQPGESLRDYITRFNEEALQ--------ELLKSKKSKREHKRS 60
           +G R + +    LLTIKQ+  ESLRDY+ RFNEE LQ         LL      R+   S
Sbjct: 267 VGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLS 326

Query: 61  -----------------------------SSSDHDSKK--DKRQRIDEGARG-------R 120
                                        S  + D K+   KR+R  +  +G       R
Sbjct: 327 FSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTDPKRERSGDKPQGSRWEKRDR 386

Query: 121 PDQGDYLKKFEKYTPTSIPLEQILMEIQNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGH 180
             Q D  +KFEKYTPT++P+EQ+LMEI++  LL  P ++K++   R K +YCLFHRDHGH
Sbjct: 387 SSQKDPPRKFEKYTPTTVPIEQVLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGH 446

Query: 181 STRNYIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDAGKDNGGPPLEIR 189
           +T++   LK+E+E LIR GYLKE+  + +A Q          G+ +  P  EIR
Sbjct: 447 ATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQN---------GESDKSPAREIR 491

BLAST of Lag0016063 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 4.8e-22
Identity = 83/234 (35.47%), Postives = 113/234 (48.29%), Query Frame = 0

Query: 1   MGAREQRKSHINLLTIKQQPGESLRDYITRFNEEALQ--------ELLKSKKSKREHKRS 60
           +G R + +    LLTIKQ+  ESL DY+ RFN+E LQ         LL      R+   S
Sbjct: 51  VGGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLS 110

Query: 61  -----------------------------SSSDHDSKKDKRQRIDEG---------ARGR 120
                                        S  + D K+  ++R   G          R R
Sbjct: 111 FSFGKKTPSTFSETLSRAQRYMSAGEFFYSKREPDGKRTDQKRERSGDKPQGSRWEKRDR 170

Query: 121 PDQGDYLKKFEKYTPTSIPLEQILMEIQNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGH 180
             Q D  +KFEKYTPT++PLEQ+LMEI++  LL  P ++K     R K +YCLFHRDH H
Sbjct: 171 SSQKDPPRKFEKYTPTTVPLEQVLMEIKDQRLLKWPERMKVPSTKRSKGRYCLFHRDHNH 230

Query: 181 STRNYIQLKDEIEALIRNGYLKEFTTKAEADQRWPRPTRDDAGKDNGGPPLEIR 189
           +T++Y  LK+E+E LIR GYL+E+  + +A Q          G+    P  EIR
Sbjct: 231 ATQDYFDLKEEVEGLIRRGYLQEYVEEPKATQN---------GESEKSPAREIR 275

BLAST of Lag0016063 vs. NCBI nr
Match: XP_022159192.1 (uncharacterized protein LOC111025612 [Momordica charantia])

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-21
Identity = 66/153 (43.14%), Postives = 95/153 (62.09%), Query Frame = 0

Query: 36  LQELLKSKKSKREHKRSSSSDHDSKKDKRQRIDEGARGRPDQGDYLKKFEKYTPTSIPLE 95
           L++ L+ K++ ++ +RS      SK +K+ R+         Q D  +KFEKYTPT++PLE
Sbjct: 40  LKKELEGKRADQKRERSGEKPLSSKWEKQDRV-------VGQKDLPRKFEKYTPTTVPLE 99

Query: 96  QILMEIQNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYL 155
           Q+LMEI++  LL  P  +K+ P+ R K +YCLFHRDHGH+T +   LK+E+E LIR GYL
Sbjct: 100 QVLMEIKDQRLLKWPETMKAPPNKRSKGRYCLFHRDHGHATLDCFDLKEEVEGLIRKGYL 159

Query: 156 KEFTTKAEADQRWPRPTRDDAGKDNGGPPLEIR 189
           KE+    +A      P R++   DN  P  EIR
Sbjct: 160 KEYVDDLKA-----TPNREN---DNKSPTREIR 177

BLAST of Lag0016063 vs. NCBI nr
Match: XP_023888238.1 (uncharacterized protein LOC112000356 [Quercus suber])

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-19
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 0

Query: 1   MGAREQRKSHINLLTIKQQPGESLRDYITRFNEEAL------QELLKSKKSKREHKRSSS 60
           +G    +KS   L++IKQ+  E+LR YIT FN+EAL       ++L +  + R  K  + 
Sbjct: 121 IGRHRYKKSTTCLMSIKQREDETLRAYITCFNKEALSINEANDKILVAAFTNRLRKEDAL 180

Query: 61  SDHDSKKDKRQRIDEGARGRPDQGDYLK-------------KFEKYTPTSIPLEQILMEI 120
              + K  KR+R +EG R +  +   +              +F  +TP + P++Q+LM+I
Sbjct: 181 QAREDKPRKRERQEEGQRDQGSKRPRIDDRRVEQRFKPPGGRFTSFTPLTAPIDQVLMQI 240

Query: 121 QNTNLLNVPRKLKSNPDNRDKSQYCLFHRDHGHSTRNYIQLKDEIEALIRNGYLKEFTTK 166
           ++   L  P KLKS+P  R + +YC FHRDHGH T +   LK +IEALIR G L++F  K
Sbjct: 241 KDEGALTFPGKLKSDPSKRSRDKYCCFHRDHGHDTADCYDLKQQIEALIRQGKLQKFVRK 300

BLAST of Lag0016063 vs. NCBI nr
Match: XP_023905316.1 (uncharacterized protein LOC112017085 [Quercus suber] >XP_023905317.1 uncharacterized protein LOC112017086 [Quercus suber])

HSP 1 Score: 103.6 bits (257), Expect = 1.9e-18
Identity = 70/218 (32.11%), Postives = 103/218 (47.25%), Query Frame = 0

Query: 1   MGAREQRKSHINLLTIKQQPGESLRDYITRFNEEA------------------------- 60
           +G    +KS   L++I+Q+  E+LR YITRFN+EA                         
Sbjct: 49  IGRHMHKKSTTCLMSIRQREDETLRSYITRFNKEAFLIDEADDKILVAAFTNGLREGKFL 108

Query: 61  ----------LQELL----------------KSKKSKREHKRSSSSDHDSKKDKRQRIDE 120
                     + E+L                + K  KRE ++ +  D D K DKR +   
Sbjct: 109 FSLYKNDPKTMSEVLYRATKYMNAEDALLAREEKPRKRERQKDARQDRDRKDDKRSKPPA 168

Query: 121 GARGRPDQGDYLKKFEKYTPTSIPLEQILMEIQNTNLLNVPRKLKSNPDNRDKSQYCLFH 168
           G            KF  +TP + P++Q+LM+I++   L  P KLK +P+ R + +YC FH
Sbjct: 169 G------------KFTNFTPLTAPIDQLLMQIKDEGSLTFPEKLKEDPNKRSRDKYCHFH 228

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158830.11.5e-2336.75uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022159368.14.8e-2235.47uncharacterized protein LOC111025785 [Momordica charantia][more]
XP_022159192.13.1e-2143.14uncharacterized protein LOC111025612 [Momordica charantia][more]
XP_023888238.11.0e-1936.41uncharacterized protein LOC112000356 [Quercus suber][more]
XP_023905316.11.9e-1832.11uncharacterized protein LOC112017085 [Quercus suber] >XP_023905317.1 uncharacter... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016063.1Lag0016063.1mRNA