Lag0016057 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016057
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr12: 32637768 .. 32639441 (-)
RNA-Seq Expression	Lag0016057
Synteny	Lag0016057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAATTAGTCGACAAACTCGACATGGAGGATTACCAATTTATCTCAAAGGTTCGCGAATTGATCTCTTGATCAATCAAACCATCGCACCGATGAACAAGATTTCGATCACCGTGAAACTCCCCAGTCGAACTAGACAAAGTATTGGGGATACAGAAATGAAAGCAATTGCTGAGGTGAGAATTTGTTATCCTCATTCCGATGGGGTTTTTCAACTTTCCGACATTAGAGATGCTCGATATCTATAATAATTACTTCTTGGACGGGGTTTTTGTTTTGGAGGTTGATCATATACATAATATAAATCGAGGTGAACTCAAACACAGTCACTTTTCCTAAATACTTACTTCCTACCTCCATATACATACATTGTATTTTTTCTATATTCCATACACATATATTATATTTCATCCATATACCTTGTATTTTCTATACATTTACACATATATTAACATTTTAAGTTTTTGTAGGCACATACACTAATGTTGCTAAACAATTGTCCAGTCAAATCATTATGTTGGAGATTTCCAGAGGTGGATTTTTGAATTTACATTGTATTTATTCTTCTAGATTGCACTTTTTTTCTTCCTTTCATTTTTTGGTTGTTGGAGAATAATTTCGGTACATTCTGCACAGATTTTTGCTTGGAAAATTCATGTATTTTTAGTTAATTTTAAAATAATATGTGTTTAGATTTTTTTTTTTTTAAATTTCACCGTACTAGATTTAGATTTGATTTTGAAGATACATATCTTTTCTCCTTAAAATTAGGAACATATCGATTTTTTCCACTCAATGGCATTTGGGGTAGGGAGCTTCTTTTGTCTAGGCTCCGACGAAGGATAGGTTATGGTCTTGATACAAATTTTTTTCTTGATCCCTGACTTCCCAAGGAATCTACGTTCAGGCTGGTTAATGGGTATGTTGGCTCTGGGTTTGCTGAATCTACCTTAGTCAGTGAGTTTATTACTGCTAGCAGAGCATGGGATGTTGCAAAGCTTAGCCGAGTTTTGTCTTCAAATGAGCTATAGTTGGTCTGTGGCATTCTGCTTGGAAGGGTGGGGGTTACAGACTCTTGGTTTTGGCATTATGATAGGCATGGTTGTTATAATGTGCGGAGCGTGTATAAGTTGTACATGAATATAAAATCAGTTGCTTCATCTTCTTGTTCACGTCGGGTTGAAAAGTGGTGGCGGGATCTATGGAAATTGTGTATACCTTCAAAAATTAAGGTTTTCATGTGGAAGGCTTTTCACTCATGTCTTCCTGTCATGACTTCGTTAATGAAACGTGGTTTGGATGTCGCCCCGGTTTGTTTTCAGTGTTCTGAAGTTGCTGAAACGGTTGATCATGCGCTGGTAGGTTGTACTCGGGCTATGATGTTTTGGTCTGTAATGTTGCCTTCGGTATGTTGGGAAACTGATTTTGGCCACAGTTTTGCTGATCGGTGTTTGGCAGTCCAATCCCAGCTCTCGGAAAGGGAGTTTATTCTATGGTGTGTGGGTTGTTGGGCTTTGTGGAATGACCGAAATGCAGTTCGGATGGAGAGGCAAATTCCGAGTTTGGTCGTGAAGTGTGACTGGGTGGAAGAGTTTATTGTCTCATTCCTACAAGCTCGTGAACAGCCTGCTTCTTTGTTTACATCTGAAGATGCACGCTCTTCTAGGATTTGA

mRNA sequence

ATGCAAATTAGTCGACAAACTCGACATGGAGGATTACCAATTTATCTCAAAGGTTCGCGAATTGATCTCTTGATCAATCAAACCATCGCACCGATGAACAAGATTTCGATCACCGTGAAACTCCCCAGTCGAACTAGACAAAGTATTGGGGATACAGAAATGAAAGCAATTGCTGAGTCAAATCATTATGTTGGAGATTTCCAGAGGCTGGTTAATGGGTATGTTGGCTCTGGGTTTGCTGAATCTACCTTAGTCAGTGAGTTTATTACTGCTAGCAGAGCATGGGATGTTGCAAAGCTTAGCCGAGTTTTGCATGGTTGTTATAATGTGCGGAGCGTGTATAAGTTGTACATGAATATAAAATCAGTTGCTTCATCTTCTTGTTCACGTCGGGTTGAAAAGTGGTGGCGGGATCTATGGAAATTGTGTATACCTTCAAAAATTAAGGTTTTCATGTGGAAGGCTTTTCACTCATGTCTTCCTGTCATGACTTCGTTAATGAAACGTGGTTTGGATGTCGCCCCGGTTTGTTTTCAGTGTTCTGAAGTTGCTGAAACGGTTGATCATGCGCTGGTAGGTTGTACTCGGGCTATGATGTTTTGGTCTGTAATGTTGCCTTCGGTATGTTGGGAAACTGATTTTGGCCACAGTTTTGCTGATCGGTGTTTGGCAGTCCAATCCCAGCTCTCGGAAAGGGAGTTTATTCTATGGTGTGTGGGTTGTTGGGCTTTGTGGAATGACCGAAATGCAGTTCGGATGGAGAGGCAAATTCCGAGTTTGGTCGTGAAGTGTGACTGGGTGGAAGAGTTTATTGTCTCATTCCTACAAGCTCGTGAACAGCCTGCTTCTTTGTTTACATCTGAAGATGCACGCTCTTCTAGGATTTGA

Coding sequence (CDS)

ATGCAAATTAGTCGACAAACTCGACATGGAGGATTACCAATTTATCTCAAAGGTTCGCGAATTGATCTCTTGATCAATCAAACCATCGCACCGATGAACAAGATTTCGATCACCGTGAAACTCCCCAGTCGAACTAGACAAAGTATTGGGGATACAGAAATGAAAGCAATTGCTGAGTCAAATCATTATGTTGGAGATTTCCAGAGGCTGGTTAATGGGTATGTTGGCTCTGGGTTTGCTGAATCTACCTTAGTCAGTGAGTTTATTACTGCTAGCAGAGCATGGGATGTTGCAAAGCTTAGCCGAGTTTTGCATGGTTGTTATAATGTGCGGAGCGTGTATAAGTTGTACATGAATATAAAATCAGTTGCTTCATCTTCTTGTTCACGTCGGGTTGAAAAGTGGTGGCGGGATCTATGGAAATTGTGTATACCTTCAAAAATTAAGGTTTTCATGTGGAAGGCTTTTCACTCATGTCTTCCTGTCATGACTTCGTTAATGAAACGTGGTTTGGATGTCGCCCCGGTTTGTTTTCAGTGTTCTGAAGTTGCTGAAACGGTTGATCATGCGCTGGTAGGTTGTACTCGGGCTATGATGTTTTGGTCTGTAATGTTGCCTTCGGTATGTTGGGAAACTGATTTTGGCCACAGTTTTGCTGATCGGTGTTTGGCAGTCCAATCCCAGCTCTCGGAAAGGGAGTTTATTCTATGGTGTGTGGGTTGTTGGGCTTTGTGGAATGACCGAAATGCAGTTCGGATGGAGAGGCAAATTCCGAGTTTGGTCGTGAAGTGTGACTGGGTGGAAGAGTTTATTGTCTCATTCCTACAAGCTCGTGAACAGCCTGCTTCTTTGTTTACATCTGAAGATGCACGCTCTTCTAGGATTTGA

Protein sequence

MQISRQTRHGGLPIYLKGSRIDLLINQTIAPMNKISITVKLPSRTRQSIGDTEMKAIAESNHYVGDFQRLVNGYVGSGFAESTLVSEFITASRAWDVAKLSRVLHGCYNVRSVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKAFHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVCWETDFGHSFADRCLAVQSQLSEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFIVSFLQAREQPASLFTSEDARSSRI

Homology

[Close]

BLAST of Lag0016057 vs. NCBI nr
Match: KAA0067681.1 (UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa] >TYK23685.1 UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 7.3e-33
Identity = 77/223 (34.53%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 76  GSGFAESTLVSEFITASRAWDVAKLSRVL---------------------------HGCY 135
           G   A   LVS FIT  R WD+  L  VL                            G +
Sbjct: 18  GGMLAVPLLVSSFITTLRLWDLNWLHLVLSEEEVLLVSGLPFGGTMVASWMWHFDPKGFH 77

Query: 136 NVRSVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKAFHSCLPVMTSLMK 195
           +V S Y+L+M   ++   S S   + WW  LWKL IP+KIK+ MW+AFH  LPV+T L+ 
Sbjct: 78  SVHSGYRLFMFHHNMIGCSDSSVTKHWWIRLWKLNIPAKIKILMWRAFHMILPVLTCLVD 137

Query: 196 RGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVCWETDFGHSFADRCLAVQSQ 255
           R +D++P+C  C +  ET+   + GC  A   W   LP V    ++   F+D C+ +   
Sbjct: 138 RRMDISPLCPYCGKHPETITQVVFGCRLAKELWKCFLPVVLSGRNYYFDFSDFCVVLADS 197

Query: 256 LSEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFI 272
           LS  +F LWC+GCW LW+D N  R+   +  +  KC W+  ++
Sbjct: 198 LSPLDFSLWCIGCWGLWDDHNDFRVCGVVLDVDAKCWWLSSYV 240

[Close]

BLAST of Lag0016057 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 143.3 bits (360), Expect = 3.4e-30
Identity = 77/245 (31.43%), Postives = 119/245 (48.57%), Query Frame = 0


Query: 74   YVGSGFAESTLVSEFITASRAWDV---------AKLSRVLH------------------- 133
            Y   G   + LV++ IT  R WD+         A ++RVL                    
Sbjct: 962  YFFKGPDPNLLVADLITEHRTWDMISLETNFNQADINRVLSIPLSPYPHDDVLIWNQSFT 1021

Query: 134  GCYNVRSVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKAFHSCLPVMTS 193
            G YNV+S Y   +++     S+CS  +E WW + WKL +P K+++F+WK FH+ LPV   
Sbjct: 1022 GVYNVKSGYHFAVSLAEQDDSTCSNSIEHWWSNFWKLKLPPKVRIFVWKVFHTSLPVAAE 1081

Query: 194  LMKRGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVCWETDFGHSFADRCLAV 253
            L +R +  +P C  C+   ETV HAL  C RA   W +   S+ ++T    S AD  L +
Sbjct: 1082 LYRRHIAFSPYCTICNSCEETVHHALFSCPRAKAVWELSNFSIDFQTIERSSTADTLLLL 1141

Query: 254  QSQLSEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFIVSFLQAREQPASLF 291
             + LS  E  L+ V CW++W++RNA+     + +      +   ++  F QAR + A   
Sbjct: 1142 STSLSSSELELFLVLCWSIWHERNAIYHGNSVRTPAAVAAYAPSYLTEFQQARAKNAKPV 1201

[Close]

BLAST of Lag0016057 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 7.1e-28
Identity = 73/241 (30.29%), Postives = 115/241 (47.72%), Query Frame = 0


Query: 80   AESTLVSEFITASRAWDVAKLSRVL----------------------------HGCYNVR 139
            A  T V+ FITA   WDV  +S                                G Y+VR
Sbjct: 1048 ALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVR 1107

Query: 140  SVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKAFHSCLPVMTSLMKRGL 199
            S YKLYM++K  A+S+ +      W  +WKL +P+KIK+F+W++ H  +P   +L+ RG+
Sbjct: 1108 SGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGI 1167

Query: 200  DVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSV-CWETDFGHSFADRCLAVQSQLS 259
               P C  C +  E++ HA   C RA   W  + P + C   +   SF +   ++  QL 
Sbjct: 1168 GELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLE 1227

Query: 260  EREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFIVSFLQAREQPASLFTSEDA 292
             ++  L  +  W +WNDRN++   +Q+  +  KC+W+  F+ S  QA+    S  T  + 
Sbjct: 1228 PKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNH 1287

[Close]

BLAST of Lag0016057 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-26
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 150 VFMWKAFHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVC 209
           +F+W+ F+ C+P M +L+KRG+D  P C  C +  ET DHAL  C RA   W+++LP   
Sbjct: 1   MFLWRVFNDCVPSMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAF 60

Query: 210 WETDFGHSFADRCLAVQSQLSEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEE 269
            + DF +S  D  L +   LS  +F L  VG WA+WNDRNA+RM+RQIP   ++ DW+  
Sbjct: 61  PQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILT 120

Query: 270 FIVSFLQAREQPA--SLFTSEDARSS 294
           ++  F Q R+ P+       EDA S+
Sbjct: 121 YVRDF-QVRDVPSLGDFRIQEDASSN 145

[Close]

BLAST of Lag0016057 vs. NCBI nr
Match: XP_030509188.1 (uncharacterized protein LOC115723863 [Cannabis sativa])

HSP 1 Score: 126.7 bits (317), Expect = 3.3e-25
Identity = 71/249 (28.51%), Postives = 113/249 (45.38%), Query Frame = 0


Query: 78   GFAESTLVSEFITASRAWDVAKL----------------------------SRVLHGCYN 137
            G   + LV++ IT  R WD+  L                            S    G YN
Sbjct: 925  GADPNLLVADLITEQRQWDLISLRANFSQPDVDRILSIPLSLFPHDDAMIWSHSFTGIYN 984

Query: 138  VRSVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKAFHSCLPVMTSLMKR 197
            V+S Y+L ++      ++ S  +E WW   WK+ +P K+++F+WK FHS LPV   L +R
Sbjct: 985  VKSGYQLAVSYAEQDDTASSHSMENWWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRR 1044

Query: 198  GLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVCWETDFGHSFADRCLAVQSQL 257
             +  +P C  C+   E+++HAL  C RA   W +    + + T    + AD  L + + L
Sbjct: 1045 HIATSPHCSICNSAEESINHALFDCPRAKAVWELSSLHIDFHTLRQSASADILLHLSTAL 1104

Query: 258  SEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFIVSFLQAREQ-----PASL 294
            S  EF L+ V CW  W++RNA+     + S      +   ++  F  AR +     P S+
Sbjct: 1105 STSEFELFLVLCWCNWHERNAIYHGNTVRSSQAVASYAPSYLAEFQNARAKRSQPTPISI 1164

[Close]

BLAST of Lag0016057 vs. ExPASy TrEMBL
Match: A0A5A7VQ24 (Adenylate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00510 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.5e-33
Identity = 77/223 (34.53%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 76  GSGFAESTLVSEFITASRAWDVAKLSRVL---------------------------HGCY 135
           G   A   LVS FIT  R WD+  L  VL                            G +
Sbjct: 18  GGMLAVPLLVSSFITTLRLWDLNWLHLVLSEEEVLLVSGLPFGGTMVASWMWHFDPKGFH 77

Query: 136 NVRSVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKAFHSCLPVMTSLMK 195
           +V S Y+L+M   ++   S S   + WW  LWKL IP+KIK+ MW+AFH  LPV+T L+ 
Sbjct: 78  SVHSGYRLFMFHHNMIGCSDSSVTKHWWIRLWKLNIPAKIKILMWRAFHMILPVLTCLVD 137

Query: 196 RGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVCWETDFGHSFADRCLAVQSQ 255
           R +D++P+C  C +  ET+   + GC  A   W   LP V    ++   F+D C+ +   
Sbjct: 138 RRMDISPLCPYCGKHPETITQVVFGCRLAKELWKCFLPVVLSGRNYYFDFSDFCVVLADS 197

Query: 256 LSEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFI 272
           LS  +F LWC+GCW LW+D N  R+   +  +  KC W+  ++
Sbjct: 198 LSPLDFSLWCIGCWGLWDDHNDFRVCGVVLDVDAKCWWLSSYV 240

[Close]

BLAST of Lag0016057 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.4e-28
Identity = 73/241 (30.29%), Postives = 115/241 (47.72%), Query Frame = 0


Query: 80   AESTLVSEFITASRAWDVAKLSRVL----------------------------HGCYNVR 139
            A  T V+ FITA   WDV  +S                                G Y+VR
Sbjct: 1048 ALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVR 1107

Query: 140  SVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKAFHSCLPVMTSLMKRGL 199
            S YKLYM++K  A+S+ +      W  +WKL +P+KIK+F+W++ H  +P   +L+ RG+
Sbjct: 1108 SGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGI 1167

Query: 200  DVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSV-CWETDFGHSFADRCLAVQSQLS 259
               P C  C +  E++ HA   C RA   W  + P + C   +   SF +   ++  QL 
Sbjct: 1168 GELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLE 1227

Query: 260  EREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFIVSFLQAREQPASLFTSEDA 292
             ++  L  +  W +WNDRN++   +Q+  +  KC+W+  F+ S  QA+    S  T  + 
Sbjct: 1228 PKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNH 1287

[Close]

BLAST of Lag0016057 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-26
Identity = 61/146 (41.78%), Postives = 88/146 (60.27%), Query Frame = 0


Query: 150 VFMWKAFHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVC 209
           +F+W+ F+ C+P M +L+KRG+D  P C  C +  ET DHAL  C RA   W+++LP   
Sbjct: 1   MFLWRVFNDCVPSMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAF 60

Query: 210 WETDFGHSFADRCLAVQSQLSEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEE 269
            + DF +S  D  L +   LS  +F L  VG WA+WNDRNA+RM+RQIP   ++ DW+  
Sbjct: 61  PQCDFNNSVQDGLLYLVESLSTPDFDLVGVGVWAIWNDRNAIRMQRQIPDAKIRSDWILT 120

Query: 270 FIVSFLQAREQPA--SLFTSEDARSS 294
           ++  F Q R+ P+       EDA S+
Sbjct: 121 YVRDF-QVRDVPSLGDFRIQEDASSN 145

[Close]

BLAST of Lag0016057 vs. ExPASy TrEMBL
Match: A0A803Q2K8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.3e-26
Identity = 72/253 (28.46%), Postives = 114/253 (45.06%), Query Frame = 0


Query: 74   YVGSGFAESTLVSEFITASRAWDVAKL----------------------------SRVLH 133
            Y   G   + LV++ IT  R WD+  L                            S    
Sbjct: 1320 YFFKGADPNLLVADLITEQRQWDLISLRANFSQPDVDRILSIPLSLFPHDDAMIWSHSFT 1379

Query: 134  GCYNVRSVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKAFHSCLPVMTS 193
            G YNV+S Y+L ++      ++ S  +E WW   WK+ +P K+++F+WK FHS LPV   
Sbjct: 1380 GIYNVKSGYQLAVSYAEQDDTASSHSMENWWSTFWKMKLPPKVRIFVWKVFHSTLPVAAE 1439

Query: 194  LMKRGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVCWETDFGHSFADRCLAV 253
            L +R +  +P C  C+   E+++HAL  C RA   W +    + + T    + AD  L +
Sbjct: 1440 LFRRHIATSPHCSICNSAEESINHALFDCPRAKAVWELSSLHIDFHTLRQSASADILLHL 1499

Query: 254  QSQLSEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFIVSFLQAREQ----- 294
             + LS  EF L+ V CW  W++RNA+     + S      +   ++  F  AR +     
Sbjct: 1500 STALSTSEFELFLVLCWCNWHERNAIYHGNTVRSSQAVASYAPSYLAEFQNARAKRSQPT 1559

[Close]

BLAST of Lag0016057 vs. ExPASy TrEMBL
Match: A0A7J6HXN5 (zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021140 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.9e-25
Identity = 58/183 (31.69%), Postives = 95/183 (51.91%), Query Frame = 0


Query: 96  DVAKLSRVLHGCYNVRSVYKLYMNIKSVASSSCSRRVEKWWRDLWKLCIPSKIKVFMWKA 155
           DV   +    G YNV+  Y+L +++     S+CS  +E WW   WK+ +P K+++F+WK 
Sbjct: 65  DVLVWNHSFTGIYNVKFGYQLVVSLAEQEDSTCSSSIEHWWSTFWKMKLPPKVRIFVWKI 124

Query: 156 FHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSVCWETDFG 215
           FH+ L V   L +R +  +P C  C+   ET++HAL  C RA   W +    + + T   
Sbjct: 125 FHTSLLVAADLYRRHIATSPYCSICNSCEETINHALFYCPRAKSVWELSNLRINFPTLGQ 184

Query: 216 HSFADRCLAVQSQLSEREFILWCVGCWALWNDRNAVRMERQIPSLVVKCDWVEEFIVSFL 275
            S AD  L + S LS  +F L+ V CW++W++RN +     + +      +   ++  F 
Sbjct: 185 SSGADILLQLSSTLSTPDFELFLVLCWSIWHERNDINHGNTVRTPAAVASYASSYLQDFQ 244

Query: 276 QAR 279
            AR
Sbjct: 245 AAR 247

[Close]

BLAST of Lag0016057 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-08
Identity = 36/129 (27.91%), Postives = 52/129 (40.31%), Query Frame = 0


Query: 139 LWKLCIPSKIKVFMWKAFHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGCTRAM 198
           +WKL +  KIK F+W+     L   T L  R +D  P+C +C    ET+ H +  C    
Sbjct: 37  IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96

Query: 199 MFWSVMLPSVCWETDFGHSFADRCLAVQSQLS--------EREFILWCVGCWALWNDRNA 258
             W      +  +     SF D  L    QLS        +R    W +  W LW  RN 
Sbjct: 97  SVWRSANIIIGNQWGPPSSFEDN-LNRLIQLSKTQTTNSLDRFLPFWIM--WRLWKSRNV 156

Query: 259 VRMERQIPS 260
              +++  S
Sbjct: 157 FLFQQKCQS 162

[Close]

BLAST of Lag0016057 vs. TAIR 10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-08
Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 0


Query: 135 WWRDLWKLCIPSKIKVFMWKAFHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGC 194
           W  D+W L I  KIK+ +WKA ++ LPV   L+ R + + P C +C +  ET+ H L  C
Sbjct: 5   WIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDF-ETITHILFNC 64

Query: 195 TRAMMFWSVMLPSVC----WET 213
             A     V++ S+     W+T
Sbjct: 65  PFAQR--EVIMKSIIDAKEWQT 83

[Close]

BLAST of Lag0016057 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.8e-06
Identity = 33/126 (26.19%), Postives = 48/126 (38.10%), Query Frame = 0


Query: 139 LWKLCIPSKIKVFMWKAFHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGCTRAM 198
           +WKL    KIK F+WK     L    +L +R +   P C +C +  ET  H    C  A 
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 199 MFW--------SVMLPSVCWETDFGHSFADRCLAVQSQLSEREFILWCVGCWALWNDRNA 257
             W         +    +  ET         CLA   Q       +W +  W LW  RN 
Sbjct: 78  QVWRASGIPHQELRTTGITMETKM-ELLLSSCLA-NRQPQLFNLAIWIL--WRLWKSRNQ 137

[Close]

BLAST of Lag0016057 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 4.0e-05
Identity = 32/113 (28.32%), Postives = 45/113 (39.82%), Query Frame = 0


Query: 147 KIKVFMWKAFHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLP 206
           KIK+F+WKA    LPV   L++R +     C +C    ET  H L  C  A   W++   
Sbjct: 3   KIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCG-APETSTHMLFHCDFAAQVWNLA-- 62

Query: 207 SVCWETDFGHSFADRCLAVQSQLSEREFILWCVG----------CWALWNDRN 250
                   GH      +     L ++  +L  VG          CW +W  RN
Sbjct: 63  ----PLQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARN 108

[Close]

BLAST of Lag0016057 vs. TAIR 10
Match: AT4G10613.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 46.2 bits (108), Expect = 5.2e-05
Identity = 32/137 (23.36%), Postives = 61/137 (44.53%), Query Frame = 0


Query: 152 MWKAFHSCLPVMTSLMKRGLDVAPVCFQCSEVAETVDHALVGCTRAMMFWSVMLPSV--- 211
           MW +    LP    L+  GL ++P+C  CS+  ET DH ++ C  +   W+++   +   
Sbjct: 1   MWISNLDRLPTRARLVSWGLQISPLCCLCSQSVETRDHLILTCGFSSSIWNMVQARLRLQ 60

Query: 212 -----CWETDFGHSFADRCLAVQSQLSEREFILWCVGCWALWNDRNAV--RMERQIPSLV 271
                 WE+        +     S    R+ +     C A+W  RN +   ++  +PS++
Sbjct: 61  PVQFRVWESLLSWI---KLSTASSPSIIRKLVAQATVC-AIWKQRNNLLHNLQDILPSII 120

Query: 272 VKCDWVEEFIVSFLQAR 279
            K   ++  I++ + AR
Sbjct: 121 FKN--IDREIINSINAR 131

The following BLAST results are available for this feature:

BLAST of Lag0016057 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067681.1	7.3e-33	34.53	UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa] >TYK23685.1 UMP-CMP kinase ...	[more]
XP_030508852.1	3.4e-30	31.43	uncharacterized protein LOC115723496 [Cannabis sativa]	[more]
XP_022158377.1	7.1e-28	30.29	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022145060.1	3.0e-26	41.78	uncharacterized protein LOC111014578 [Momordica charantia]	[more]
XP_030509188.1	3.3e-25	28.51	uncharacterized protein LOC115723863 [Cannabis sativa]	[more]

BLAST of Lag0016057 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0016057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VQ24	3.5e-33	34.53	Adenylate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G005...	[more]
A0A6J1DX30	3.4e-28	30.29	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1CTE3	1.4e-26	41.78	uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A803Q2K8	9.3e-26	28.46	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7J6HXN5	7.9e-25	31.69	zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_021140 PE=4...	[more]

BLAST of Lag0016057 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02650.1	2.3e-08	27.91	Ribonuclease H-like superfamily protein	[more]
AT3G26855.1	3.0e-08	35.37	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT3G25270.1	2.8e-06	26.19	Ribonuclease H-like superfamily protein	[more]
AT1G10000.1	4.0e-05	28.32	Ribonuclease H-like superfamily protein	[more]
AT4G10613.1	5.2e-05	23.36	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 108..201 e-value: 6.3E-17 score: 62.1
None	No IPR available	PANTHER	PTHR46736:SF6	SUBFAMILY NOT NAMED	coord: 51..256
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 51..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016057.1	Lag0016057.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0016301	kinase activity