Lag0016035 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0016035
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PLAC8 family protein
Location	chr12: 32129161 .. 32130666 (-)
RNA-Seq Expression	Lag0016035
Synteny	Lag0016035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGCAGGCTGATTACATTGAGAAAATGCAGCTTCGCCAGAACTACAGGAATTTCTGGCATACCGATCTCATGGGCACCATTGCAGCCCATCCGCCTTGTATGTCTTTCTAATTTCTTCTTTGTTTGCTTAGAATTTTTGGGATGATTCGATTGAGAGGGGATAATGTAGGAAATCTTGTGTTTGTAGTTGATTCTTTAGTTGGTTTCTCTTGCTCTGTTTTGTTGATGAGATGAGCCAAAAGTTACCTAAATCGGATCATCCTTGATTTTGGTTGAAATGACCTTTTGACGTTCTGTAGCTCTGTTCCTTTCAAAAGGGTTAACAATGGCGGCTGTTGGTTTATTTGCTAACAGGGCATTCTTTCATTTTGTTTATTTTGTTAAATATCTTGATCTTGCTTGACCAAGGAAATGTATGGTTCTGATTGTTATATTGAAAAAAATATTAGGTTTTATGTCAGTTTCAGAATATTAAATTTCAGCATTAGTCATTTTTCTCACCAACCATACAACAACAAGGTGTTCACCTTTTCTCATATATTTTTTGTTTGGGCCCAATCATTAATGTTCTTTTATTCTTCTGTTTTGCAGATTGTTGCTTCTCTATATTCTGGTAAGGTGTTCGTTCTCTGATGAGTTCTCAGTCATTAGTTTGATTTCAGATATCGAAAAGCTTTGTCAAGTTTGTGGACGTGTGTGTTCTTAGTTCATTAATGCTGTAATACTCTCCAACTTGGCTGTTTGATAAACAAAATTGAGAAGCCATCTAAATTGTACTTCAAACATTCTCATGGCTTCAAAAAGGAATGTAAATATGTGCTTGCTTTATAATGTTCAAAATGGTATTTGTTTTCTTGCCTTTGGGGTTTATAGAGTACTTTGATATAGTTTTTCTTATATTGTTTCTTGATTTTGTGAGAAGTGGTCCATGTGTTTCTTACCTTCTGCGCAAACGAGCTCTGTACGATGATATGTCAAGGTATTTTTGATAAATTTTTGTGATTTTATCACAAGATAAAGTGTGTACCATTGCTGAACTTTTTGGTTAATCTATCATTAGATACACATGCTGTGGTGGCTACATGCCTTGCAGTGGCAAGTGTGGAGAAAGGAACTGCCCTGAAGCTTGTCTATGCACTGAGGTACGGCTATCGATTGAGAATCATCATCTCCTTTGAGCCTCTAATTATCTATCTATACATCACTCCATACATTTAACTCTTCTATGTGATCTCCATTCAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCGACACGTTTCATGTTGCAAGATGAGTTCAATATACAGACAACTGAGTGTGATAACTGCATCATCGTACCGTCGTCTCTCTCGATCCATTTGTTCGTTAAGCTGCTTGTAGTACCTCTGCCTTTTCTCCCCCTAACAAGTGTTTGTCTTAACTTTGCAGGGCTTTATGCTGTGCCTTTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGA

mRNA sequence

ATGGCGTCGCAGGCTGATTACATTGAGAAAATGCAGCTTCGCCAGAACTACAGGAATTTCTGGCATACCGATCTCATGGGCACCATTGCAGCCCATCCGCCTTATTGTTGCTTCTCTATATTCTGTGGTCCATGTGTTTCTTACCTTCTGCGCAAACGAGCTCTGTACGATGATATGTCAAGATACACATGCTGTGGTGGCTACATGCCTTGCAGTGGCAAGTGTGGAGAAAGGAACTGCCCTGAAGCTTGTCTATGCACTGAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCGACACGTTTCATGTTGCAAGATGAGTTCAATATACAGACAACTGAGTGTGATAACTGCATCATCGTACCGTCGTCTCTCTCGATCCATTTGTTCGTTAAGCTGCTTGTAGTACCTCTGCCTTTTCTCCCCCTAACAAGTGTTTGTCTTAACTTTGCAGGGCTTTATGCTGTGCCTTTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGA

Coding sequence (CDS)

ATGGCGTCGCAGGCTGATTACATTGAGAAAATGCAGCTTCGCCAGAACTACAGGAATTTCTGGCATACCGATCTCATGGGCACCATTGCAGCCCATCCGCCTTATTGTTGCTTCTCTATATTCTGTGGTCCATGTGTTTCTTACCTTCTGCGCAAACGAGCTCTGTACGATGATATGTCAAGATACACATGCTGTGGTGGCTACATGCCTTGCAGTGGCAAGTGTGGAGAAAGGAACTGCCCTGAAGCTTGTCTATGCACTGAGGTTTTCTGTTGCTTTGCAAATTCAGTTGCATCGACACGTTTCATGTTGCAAGATGAGTTCAATATACAGACAACTGAGTGTGATAACTGCATCATCGTACCGTCGTCTCTCTCGATCCATTTGTTCGTTAAGCTGCTTGTAGTACCTCTGCCTTTTCTCCCCCTAACAAGTGTTTGTCTTAACTTTGCAGGGCTTTATGCTGTGCCTTTCACAACTGGCTTGCATATGCTCCATAATTGCTTGCTTGCTTGGAAGTGA

Protein sequence

MASQADYIEKMQLRQNYRNFWHTDLMGTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMSRYTCCGGYMPCSGKCGERNCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCIIVPSSLSIHLFVKLLVVPLPFLPLTSVCLNFAGLYAVPFTTGLHMLHNCLLAWK

Homology

[Close]

BLAST of Lag0016035 vs. NCBI nr
Match: XP_038875430.1 (uncharacterized protein LOC120067891 isoform X1 [Benincasa hispida] >XP_038875431.1 uncharacterized protein LOC120067891 isoform X1 [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MASQADYIEKMQLRQNYRNFWHTDLMGTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS 60
           MASQADYIEKMQLRQNYRNFWHTDL GTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS
Sbjct: 1   MASQADYIEKMQLRQNYRNFWHTDLTGTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS 60

Query: 61  RYTCCGGYMPCSGKCGERNCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII 120
           RYTCCGGYMPCSGKCGE  CPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII
Sbjct: 61  RYTCCGGYMPCSGKCGESQCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII 120

[Close]

BLAST of Lag0016035 vs. NCBI nr
Match: XP_038875432.1 (uncharacterized protein LOC120067891 isoform X2 [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-66
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MASQADYIEKMQLRQNYRNFWHTDLMGTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS 60
           MASQADYIEKMQLRQNYRNFWHTDL GTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS
Sbjct: 1   MASQADYIEKMQLRQNYRNFWHTDLTGTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS 60

Query: 61  RYTCCGGYMPCSGKCGERNCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII 120
           RYTCCGGYMPCSGKCGE  CPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII
Sbjct: 61  RYTCCGGYMPCSGKCGESQCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII 120

[Close]

BLAST of Lag0016035 vs. NCBI nr
Match: XP_004138581.1 (uncharacterized protein LOC101221132 [Cucumis sativus] >KGN45682.1 hypothetical protein Csa_005223 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 4.7e-64
Identity = 111/120 (92.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MASQADYIEKMQLRQNYRNFWHTDLMGTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS 60
           MASQADY++KMQLRQNYRNFWHTDL GTIAA PPYCCFS+FC PCVSYLLRKRALYDDMS
Sbjct: 1   MASQADYMDKMQLRQNYRNFWHTDLTGTIAASPPYCCFSVFCSPCVSYLLRKRALYDDMS 60

Query: 61  RYTCCGGYMPCSGKCGERNCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII 120
           RYTCCGGYMPCSGKCGE++CPEACLCTEVFCCFANSVASTRFMLQDEFNIQ+TECDNCII
Sbjct: 61  RYTCCGGYMPCSGKCGEKHCPEACLCTEVFCCFANSVASTRFMLQDEFNIQSTECDNCII 120

[Close]

BLAST of Lag0016035 vs. NCBI nr
Match: XP_023006645.1 (uncharacterized protein LOC111499309 [Cucurbita maxima] >XP_023006647.1 uncharacterized protein LOC111499309 [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 1.0e-63
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MASQADYIEKMQLRQNYRNFWHTDLMGTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS 60
           MASQADY++KMQLRQ+YRN WHTDLMGTIAAHP YCCFSIFCGPCVSYLLRKRALY+DMS
Sbjct: 1   MASQADYVDKMQLRQSYRNLWHTDLMGTIAAHPSYCCFSIFCGPCVSYLLRKRALYNDMS 60

Query: 61  RYTCCGGYMPCSGKCGERNCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII 120
           RYTCCGGYMPCSGKCGE  CPEACLCTEVFCCF+NSVASTRFMLQDEFNIQTTECDNCII
Sbjct: 61  RYTCCGGYMPCSGKCGESKCPEACLCTEVFCCFSNSVASTRFMLQDEFNIQTTECDNCII 120

[Close]

BLAST of Lag0016035 vs. NCBI nr
Match: KAG6575191.1 (hypothetical protein SDJN03_25830, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 251.1 bits (640), Expect = 6.8e-63
Identity = 110/120 (91.67%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASQADYIEKMQLRQNYRNFWHTDLMGTIAAHPPYCCFSIFCGPCVSYLLRKRALYDDMS 60
           MASQADY++KMQLRQ+YRN WHTDLMGTIAAHP YCCFSIFCGPCVSYLLRKRALY+DMS
Sbjct: 34  MASQADYVDKMQLRQSYRNLWHTDLMGTIAAHPSYCCFSIFCGPCVSYLLRKRALYNDMS 93

Query: 61  RYTCCGGYMPCSGKCGERNCPEACLCTEVFCCFANSVASTRFMLQDEFNIQTTECDNCII 120
           RYTCCGGYMPCSGKCGE  CP ACLCTEVFCCF NSVASTRFMLQDEFNIQTTECDNCII
Sbjct: 94  RYTCCGGYMPCSGKCGESKCPAACLCTEVFCCFTNSVASTRFMLQDEFNIQTTECDNCII 153

The following BLAST results are available for this feature:

BLAST of Lag0016035 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875430.1	1.3e-66	97.50	uncharacterized protein LOC120067891 isoform X1 [Benincasa hispida] >XP_03887543...	[more]
XP_038875432.1	1.3e-66	97.50	uncharacterized protein LOC120067891 isoform X2 [Benincasa hispida]	[more]
XP_004138581.1	4.7e-64	92.50	uncharacterized protein LOC101221132 [Cucumis sativus] >KGN45682.1 hypothetical ...	[more]
XP_023006645.1	1.0e-63	92.50	uncharacterized protein LOC111499309 [Cucurbita maxima] >XP_023006647.1 uncharac...	[more]
KAG6575191.1	6.8e-63	91.67	hypothetical protein SDJN03_25830, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0016035 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31152:SF18	PLAC8 FAMILY PROTEIN-RELATED	coord: 1..120
None	No IPR available	PANTHER	PTHR31152	PLAC8 FAMILY PROTEIN	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0016035.1	Lag0016035.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane