Lag0016030 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016030
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAcidic leucine-rich nuclear phosphoprotein 32 family member A-like
Locationchr12: 32079099 .. 32079503 (-)
RNA-Seq ExpressionLag0016030
SyntenyLag0016030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCAAGTGTACATGGTTCGACACAGATAGTAACAAGAATATATCACACATGGATTTAGGGTTCAAGTCAATCAATACATTTTGGTTCTGGTATGCTGATGAACCTTTCATTCTTGCTAATCAAGCACAACAAGTCTTCTATATCAATGACCCAAAATATGGTGACCCTTGGAAAGTAGTTCAGATAGTCCAATATAAACGCTTGTGGGATGTACCGGAGGCAGAAAATATGGAGGATGATCAACTTGCACTGCTAGAAGTTGTCAGTGGAATAGGTGTTGATGAATCGATTGAGGAAGATAACAGAATGTGCAAAGATGAAGTTGAACCCACAATCATAGAAGGACAAATTATTGAGAACAACGATGATAATTTCATAATGACGAAGAAAATGACGTAG

mRNA sequence

ATGTTGTTCAAGTGTACATGGTTCGACACAGATAGTAACAAGAATATATCACACATGGATTTAGGGTTCAAGTCAATCAATACATTTTGGTTCTGGTATGCTGATGAACCTTTCATTCTTGCTAATCAAGCACAACAAGTCTTCTATATCAATGACCCAAAATATGGTGACCCTTGGAAAGTAGTTCAGATAGTCCAATATAAACGCTTGTGGGATGTACCGGAGGCAGAAAATATGGAGGATGATCAACTTGCACTGCTAGAAGTTGTCAGTGGAATAGGTGTTGATGAATCGATTGAGGAAGATAACAGAATGTGCAAAGATGAAGTTGAACCCACAATCATAGAAGGACAAATTATTGAGAACAACGATGATAATTTCATAATGACGAAGAAAATGACGTAG

Coding sequence (CDS)

ATGTTGTTCAAGTGTACATGGTTCGACACAGATAGTAACAAGAATATATCACACATGGATTTAGGGTTCAAGTCAATCAATACATTTTGGTTCTGGTATGCTGATGAACCTTTCATTCTTGCTAATCAAGCACAACAAGTCTTCTATATCAATGACCCAAAATATGGTGACCCTTGGAAAGTAGTTCAGATAGTCCAATATAAACGCTTGTGGGATGTACCGGAGGCAGAAAATATGGAGGATGATCAACTTGCACTGCTAGAAGTTGTCAGTGGAATAGGTGTTGATGAATCGATTGAGGAAGATAACAGAATGTGCAAAGATGAAGTTGAACCCACAATCATAGAAGGACAAATTATTGAGAACAACGATGATAATTTCATAATGACGAAGAAAATGACGTAG

Protein sequence

MLFKCTWFDTDSNKNISHMDLGFKSINTFWFWYADEPFILANQAQQVFYINDPKYGDPWKVVQIVQYKRLWDVPEAENMEDDQLALLEVVSGIGVDESIEEDNRMCKDEVEPTIIEGQIIENNDDNFIMTKKMT
Homology
BLAST of Lag0016030 vs. NCBI nr
Match: KAA0040145.1 (transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 3.5e-35
Identity = 75/127 (59.06%), Postives = 92/127 (72.44%), Query Frame = 0

Query: 2   LFKCTWFDTDSNKNISHMDLGFKSINTFWFWYADEPFILANQAQQVFYINDPKYGDPWKV 61
           LFKC WFDTD  KN  H DLGFK INT  FWY D+P+ILA QA QVFYI+DPK    WK+
Sbjct: 496 LFKCNWFDTDVKKNKFHCDLGFKIINTSHFWYTDDPYILATQAVQVFYIDDPKLRSIWKI 555

Query: 62  VQIVQYKRLWDVPEAENMEDDQLALLEVVSGIGVDESIEEDNRMCKDEVEPTIIEGQIIE 121
           VQIVQ K++WD+PE+E +EDD+  LLE  S IGVDESI  D   C+ +VEPT+++ +  E
Sbjct: 556 VQIVQNKQVWDIPESEEVEDDKFELLEACSSIGVDESI-HDIPFCRGDVEPTVVDHKETE 615

Query: 122 NNDDNFI 129
           N D + I
Sbjct: 616 NQDQSRI 621

BLAST of Lag0016030 vs. NCBI nr
Match: KAA0045598.1 (uncharacterized protein E6C27_scaffold243G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 3.0e-34
Identity = 74/127 (58.27%), Postives = 91/127 (71.65%), Query Frame = 0

Query: 2   LFKCTWFDTDSNKNISHMDLGFKSINTFWFWYADEPFILANQAQQVFYINDPKYGDPWKV 61
           LFKC WFDTD  KN    DLGFK INT  FWY D+P+ILA QA QVFYI+DPK    WK+
Sbjct: 549 LFKCNWFDTDVKKNKFRCDLGFKIINTSRFWYTDDPYILATQAVQVFYIDDPKLRSNWKI 608

Query: 62  VQIVQYKRLWDVPEAENMEDDQLALLEVVSGIGVDESIEEDNRMCKDEVEPTIIEGQIIE 121
           VQIVQ K++WD+PE+E +EDD+  LLE  S IGVDESI  D   C+ +VEPT+++ +  E
Sbjct: 609 VQIVQNKQVWDIPESEEVEDDRFELLEACSSIGVDESI-HDIPFCRGDVEPTVVDHKETE 668

Query: 122 NNDDNFI 129
           N D + I
Sbjct: 669 NQDQSRI 674

BLAST of Lag0016030 vs. NCBI nr
Match: KAA0057530.1 (uncharacterized protein E6C27_scaffold280G004210 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 6.7e-34
Identity = 68/129 (52.71%), Postives = 100/129 (77.52%), Query Frame = 0

Query: 2   LFKCTWFDTDSNKN--ISHMDLGFKSINTFWFWYADEPFILANQAQQVFYINDPKYGDPW 61
           LFKC W+DTD NK+   +H+++G+KS+NT  FWYA+EP ILA QA QVFY++DPK G  W
Sbjct: 636 LFKCRWYDTDENKSQRTAHIEVGYKSLNTSHFWYAEEPVILATQAHQVFYVDDPKNGSNW 695

Query: 62  KVVQIVQYKRLWDVPEAENMEDDQLALLEVVSGIGVDESIEEDNRMCKDEVEPTIIEGQI 121
           KVVQ++Q KR+WDVPE E++++D + +LEVV    VD+ IE+D  +C+++V+PTI+E  +
Sbjct: 696 KVVQVIQNKRIWDVPEVEDVQNDHINILEVVVSHQVDDHIEDDT-LCRNDVDPTIVERPV 755

Query: 122 IENNDDNFI 129
           + +  D+FI
Sbjct: 756 VRHVTDDFI 763

BLAST of Lag0016030 vs. NCBI nr
Match: KAA0038099.1 (uncharacterized protein E6C27_scaffold36G003190 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 8.7e-34
Identity = 73/127 (57.48%), Postives = 90/127 (70.87%), Query Frame = 0

Query: 2   LFKCTWFDTDSNKNISHMDLGFKSINTFWFWYADEPFILANQAQQVFYINDPKYGDPWKV 61
           LFKC WFDTD  KN    DLGFK INT  FWY D+P+ILA Q  QVFYI+DPK    WK+
Sbjct: 716 LFKCNWFDTDVKKNKFRCDLGFKIINTSRFWYTDDPYILATQVVQVFYIDDPKLRSNWKI 775

Query: 62  VQIVQYKRLWDVPEAENMEDDQLALLEVVSGIGVDESIEEDNRMCKDEVEPTIIEGQIIE 121
           VQIVQ K++WD+PE+E +EDD+  LLE  S IGVDESI  D   C+ +VEPT+++ +  E
Sbjct: 776 VQIVQNKQVWDIPESEEVEDDRFELLEACSSIGVDESI-HDIPFCRGDVEPTVVDHKETE 835

Query: 122 NNDDNFI 129
           N D + I
Sbjct: 836 NQDQSRI 841

BLAST of Lag0016030 vs. NCBI nr
Match: KAA0043386.1 (uncharacterized protein E6C27_scaffold588G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 68/129 (52.71%), Postives = 100/129 (77.52%), Query Frame = 0

Query: 2   LFKCTWFDTDSNKN--ISHMDLGFKSINTFWFWYADEPFILANQAQQVFYINDPKYGDPW 61
           LFKC W+DTD NK+   +H+++G+KS+NT  FWYA+EP ILA QA QVFY++DPK G  W
Sbjct: 558 LFKCRWYDTDVNKSQRTTHIEVGYKSLNTSRFWYAEEPVILATQAHQVFYVDDPKNGSNW 617

Query: 62  KVVQIVQYKRLWDVPEAENMEDDQLALLEVVSGIGVDESIEEDNRMCKDEVEPTIIEGQI 121
           KVVQ++Q KR+WDVPE E++++D + +LEVV    VD+ IE+D  +C+++V+PTI+E  +
Sbjct: 618 KVVQVIQNKRIWDVPEVEDVQNDHINILEVVVSHQVDDHIEDDT-LCRNDVDPTIVERSV 677

Query: 122 IENNDDNFI 129
           + +  D+FI
Sbjct: 678 VRHVTDDFI 685

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0040145.13.5e-3559.06transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa][more]
KAA0045598.13.0e-3458.27uncharacterized protein E6C27_scaffold243G001040 [Cucumis melo var. makuwa][more]
KAA0057530.16.7e-3452.71uncharacterized protein E6C27_scaffold280G004210 [Cucumis melo var. makuwa][more]
KAA0038099.18.7e-3457.48uncharacterized protein E6C27_scaffold36G003190 [Cucumis melo var. makuwa][more]
KAA0043386.11.1e-3352.71uncharacterized protein E6C27_scaffold588G00570 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025312Domain of unknown function DUF4216PFAMPF13952DUF4216coord: 1..62
e-value: 5.6E-19
score: 68.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016030.1Lag0016030.1mRNA