Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTGTCTCCCTCATTTTTGGCTTGAGCTTGATGGTGGTAACTCCCTCCTGTCTGGCTCAAGACTCACCTGAGGATTTCGTGAATGCCCATAACACGGCTCGTGCCAAGGTTGGCGTCGGACCCGTGGAGTGGGATGAAAAAGTAGCAAGCTATGCTCGACAATATGCGAGCGAACGCATGAAGGACTGTGAATTGATACACTCGACTGGTGGTCCATATGGGGAAAATCTTGCATGGGGCATGCCAGACATGTCAGGCACTAGTGCAGTTGAGATGTGGTTCAATGAAAAAGAATTTTACGATTATGACACTGATACATGTGCAGATGGTAAGATGTGTGGCCATTACACCCAGGTGGTTTGGAAAAATTCAATCAGGATTGGATGTGCAAAAGTGAAATGCATGAGCGCAAATGCTGGTTCATTCATCACCTGCAACTATGATCCCGTTGGCAATATCATTGGCCAAAAGCCATTTTGA
mRNA sequence
ATGGATCTTGTCTCCCTCATTTTTGGCTTGAGCTTGATGGTGGTAACTCCCTCCTGTCTGGCTCAAGACTCACCTGAGGATTTCGTGAATGCCCATAACACGGCTCGTGCCAAGGTTGGCGTCGGACCCGTGGAGTGGGATGAAAAAGTAGCAAGCTATGCTCGACAATATGCGAGCGAACGCATGAAGGACTGTGAATTGATACACTCGACTGGTGGTCCATATGGGGAAAATCTTGCATGGGGCATGCCAGACATGTCAGGCACTAGTGCAGTTGAGATGTGGTTCAATGAAAAAGAATTTTACGATTATGACACTGATACATGTGCAGATGGTAAGATGTGTGGCCATTACACCCAGGTGGTTTGGAAAAATTCAATCAGGATTGGATGTGCAAAAGTGAAATGCATGAGCGCAAATGCTGGTTCATTCATCACCTGCAACTATGATCCCGTTGGCAATATCATTGGCCAAAAGCCATTTTGA
Coding sequence (CDS)
ATGGATCTTGTCTCCCTCATTTTTGGCTTGAGCTTGATGGTGGTAACTCCCTCCTGTCTGGCTCAAGACTCACCTGAGGATTTCGTGAATGCCCATAACACGGCTCGTGCCAAGGTTGGCGTCGGACCCGTGGAGTGGGATGAAAAAGTAGCAAGCTATGCTCGACAATATGCGAGCGAACGCATGAAGGACTGTGAATTGATACACTCGACTGGTGGTCCATATGGGGAAAATCTTGCATGGGGCATGCCAGACATGTCAGGCACTAGTGCAGTTGAGATGTGGTTCAATGAAAAAGAATTTTACGATTATGACACTGATACATGTGCAGATGGTAAGATGTGTGGCCATTACACCCAGGTGGTTTGGAAAAATTCAATCAGGATTGGATGTGCAAAAGTGAAATGCATGAGCGCAAATGCTGGTTCATTCATCACCTGCAACTATGATCCCGTTGGCAATATCATTGGCCAAAAGCCATTTTGA
Protein sequence
MDLVSLIFGLSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF
Homology
BLAST of Lag0016003 vs. NCBI nr
Match:
XP_008455064.1 (PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa] >TYK06836.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa])
HSP 1 Score: 251.5 bits (641), Expect = 4.8e-63
Identity = 113/166 (68.07%), Postives = 140/166 (84.34%), Query Frame = 0
Query: 1 MDLVSLIFGLSL-----MVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYAR 60
MD++ L LSL ++ PS LAQDSP DFVNAHN ARA+VGVGPV WDE+VAS+AR
Sbjct: 1 MDVLKLSLSLSLFCVLTFIMLPSSLAQDSPRDFVNAHNAARAQVGVGPVHWDERVASFAR 60
Query: 61 QYASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMC 120
QYA++R+ DC L+HS GGPYGEN+AWGMPD+SGT+AV+MW NEK+FY+Y ++TCA GK+C
Sbjct: 61 QYANQRINDCRLVHS-GGPYGENIAWGMPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVC 120
Query: 121 GHYTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
GHYTQVVW+NS+RIGCAKV+C + N G+FI CNY+P GNIIGQKP+
Sbjct: 121 GHYTQVVWRNSVRIGCAKVRCTN-NRGTFIICNYEPRGNIIGQKPY 164
BLAST of Lag0016003 vs. NCBI nr
Match:
XP_038887491.1 (pathogenesis-related protein 1-like [Benincasa hispida])
HSP 1 Score: 249.2 bits (635), Expect = 2.4e-62
Identity = 112/164 (68.29%), Postives = 140/164 (85.37%), Query Frame = 0
Query: 1 MDLVSL---IFGLSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQY 60
MDL+ L +F + + PS LAQDSP+D++NAHN ARA+VGVGPV+WDE+VAS+ARQY
Sbjct: 1 MDLLKLSLSLFCVLSFTMLPSSLAQDSPQDYLNAHNAARAQVGVGPVQWDERVASFARQY 60
Query: 61 ASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGH 120
A++R+ DC+LIHS GGPYGEN+AWG PD+SGT+AV+MW NEK+FY+Y T+TCA GK+CGH
Sbjct: 61 ANQRINDCKLIHS-GGPYGENIAWGWPDLSGTAAVQMWVNEKQFYNYGTNTCAAGKVCGH 120
Query: 121 YTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
YTQVVW+ S+RIGCAKVKC + N G+FI CNYDP GNIIGQKP+
Sbjct: 121 YTQVVWRKSVRIGCAKVKCTN-NGGTFIICNYDPRGNIIGQKPY 162
BLAST of Lag0016003 vs. NCBI nr
Match:
XP_022972506.1 (pathogenesis-related protein PR-1 type-like [Cucurbita maxima])
HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 109/165 (66.06%), Postives = 137/165 (83.03%), Query Frame = 0
Query: 1 MDLVSLIFGLSLMVVT----PSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQ 60
MDL L L +V++ S LAQDSP+DFVNAHN ARA+VGVGP+ WDE+VAS+ARQ
Sbjct: 1 MDLFKLSLSLFYVVLSFAMFHSSLAQDSPQDFVNAHNAARAQVGVGPIRWDERVASFARQ 60
Query: 61 YASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCG 120
YA++R+ DC L+HS GGPYGEN+AWG PD+SGT+AV MW +EK+FY+ T+TCA GK+CG
Sbjct: 61 YANQRINDCRLVHS-GGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSTNTCAAGKVCG 120
Query: 121 HYTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
HYTQVVW+NS+RIGCAKV+C + N G+FITCNYDP GN++GQ+PF
Sbjct: 121 HYTQVVWRNSVRIGCAKVRCTN-NRGTFITCNYDPPGNVVGQRPF 163
BLAST of Lag0016003 vs. NCBI nr
Match:
XP_011658861.1 (basic form of pathogenesis-related protein 1 [Cucumis sativus])
HSP 1 Score: 242.3 bits (617), Expect = 2.9e-60
Identity = 110/166 (66.27%), Postives = 136/166 (81.93%), Query Frame = 0
Query: 1 MDLVSLIFGLSLMVV-----TPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYAR 60
MD++ L LSL V PS LAQDSP+DF++AHNTARA+ GV PV+WDE VAS+A
Sbjct: 1 MDVLKLSLSLSLFCVLTFFMLPSSLAQDSPQDFLDAHNTARAQDGVEPVQWDETVASFAL 60
Query: 61 QYASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMC 120
QYA++R+ DC L+HS GGPYGEN+AWGMPD+SGT+AVEMW NEKEFYDY ++TCA ++C
Sbjct: 61 QYANQRINDCSLVHS-GGPYGENIAWGMPDLSGTAAVEMWVNEKEFYDYGSNTCAASRVC 120
Query: 121 GHYTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
GHYTQVVW+NS+RIGCAKV C + N G+FITCNYDP GN +GQ+P+
Sbjct: 121 GHYTQVVWRNSVRIGCAKVICTN-NGGTFITCNYDPPGNFVGQRPY 164
BLAST of Lag0016003 vs. NCBI nr
Match:
XP_022952656.1 (pathogenesis-related protein PRB1-2-like [Cucurbita moschata])
HSP 1 Score: 240.7 bits (613), Expect = 8.5e-60
Identity = 109/164 (66.46%), Postives = 137/164 (83.54%), Query Frame = 0
Query: 1 MDLVSL---IFGLSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQY 60
MDL L +F +S + PS LAQDSP+DFVNAHN ARA+VGVGPV+WDEKVAS+ARQY
Sbjct: 1 MDLFKLSLFLFYVSSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVKWDEKVASFARQY 60
Query: 61 ASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGH 120
A++R+ DC L+HS+ GPYGEN+AWG D+SG +AV MW +EK+FY+ T+TCA GK+CGH
Sbjct: 61 ANQRINDCRLMHSS-GPYGENIAWGSSDLSGIAAVRMWVDEKQFYNPRTNTCATGKVCGH 120
Query: 121 YTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
YTQVVW++S+RIGCAKVKC + N G+FITCNYDP GN++GQ+PF
Sbjct: 121 YTQVVWRSSVRIGCAKVKCTN-NRGTFITCNYDPPGNVVGQRPF 162
BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match:
P09042 (Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3)
HSP 1 Score: 199.1 bits (505), Expect = 3.7e-50
Identity = 85/153 (55.56%), Postives = 120/153 (78.43%), Query Frame = 0
Query: 10 LSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIH 69
L ++++ SC AQ+S +D+++AHNTARA VGV P+ WD++VA+YA+ YAS+ DC L+H
Sbjct: 19 LLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVH 78
Query: 70 STGGPYGENLAWGMPD-MSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIR 129
S G YGENLAWG D ++ AVEMW NEK++Y +D++TCA G++CGHYTQVVW+NS+R
Sbjct: 79 S-HGQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVR 138
Query: 130 IGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
+GCA+V+C N G ++CNYDP GN+IG+ P+
Sbjct: 139 VGCARVQC--NNGGYIVSCNYDPPGNVIGKSPY 168
BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match:
P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)
HSP 1 Score: 192.6 bits (488), Expect = 3.5e-48
Identity = 85/153 (55.56%), Postives = 118/153 (77.12%), Query Frame = 0
Query: 10 LSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIH 69
L +V++ SC AQ+S +D+++AHNTARA VGV P+ WD++VA+YA+ YAS+ DC L+H
Sbjct: 19 LLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVH 78
Query: 70 STGGPYGENLAWGMPD-MSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIR 129
S G YGENLA G D M+ AVEMW +EK++YD+D++TCA G++CGHYTQVVW+NS+R
Sbjct: 79 S-HGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVR 138
Query: 130 IGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
+GCA+V+C N G ++CNYDP GN G+ P+
Sbjct: 139 VGCARVQC--NNGGYVVSCNYDPPGNYRGESPY 168
BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match:
P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 191.8 bits (486), Expect = 5.9e-48
Identity = 85/153 (55.56%), Postives = 116/153 (75.82%), Query Frame = 0
Query: 10 LSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIH 69
L ++++ S AQ+S +D+++AHNTARA VGV P+ WD VA+YA+ Y S+ DC L+H
Sbjct: 19 LLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVH 78
Query: 70 STGGPYGENLAWGMPD-MSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIR 129
S G YGENLA G D M+ AVEMW +EK++YD+D++TCA G++CGHYTQVVW+NS+R
Sbjct: 79 S-HGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVR 138
Query: 130 IGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
+GCA+VKC N G ++CNYDP GN+IGQ P+
Sbjct: 139 VGCARVKC--NNGGYVVSCNYDPPGNVIGQSPY 168
BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match:
P33154 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1 SV=1)
HSP 1 Score: 191.8 bits (486), Expect = 5.9e-48
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 0
Query: 14 VVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIHSTGG 73
+V PS AQDSP+D++ HN AR VGVGP++WDE+VA+YAR YA + +C LIHS GG
Sbjct: 20 LVLPS-KAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIHS-GG 79
Query: 74 PYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIRIGCAK 133
PYGENLAWG D+SG SAV MW +EK Y+Y +TC +CGHYTQVVW+ S+R+GCAK
Sbjct: 80 PYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTC--NGVCGHYTQVVWRKSVRLGCAK 139
Query: 134 VKCMSANAGSFITCNYDPVGNIIGQKPF 162
V+C N G+ I+CNYDP GN + +KP+
Sbjct: 140 VRC--NNGGTIISCNYDPRGNYVNEKPY 161
BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match:
P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 1.3e-47
Identity = 83/152 (54.61%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 10 LSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIH 69
++ ++ S AQ+SP+D++N HN AR +VGVGP+ WD ++A+YA+ YA++R+ DC +IH
Sbjct: 12 ITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIH 71
Query: 70 STGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIRI 129
S GPYGENLA P ++ AV+MW +EK FYDY++++C G +CGHYTQVVW+NS+R+
Sbjct: 72 S-HGPYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGG-VCGHYTQVVWRNSVRL 131
Query: 130 GCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
GCA+V+ S N FITCNYDP GN IGQ+PF
Sbjct: 132 GCARVR--SNNGWFFITCNYDPPGNFIGQRPF 159
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008455064.1 | 4.8e-63 | 68.07 | PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1... | [more] |
XP_038887491.1 | 2.4e-62 | 68.29 | pathogenesis-related protein 1-like [Benincasa hispida] | [more] |
XP_022972506.1 | 1.7e-60 | 66.06 | pathogenesis-related protein PR-1 type-like [Cucurbita maxima] | [more] |
XP_011658861.1 | 2.9e-60 | 66.27 | basic form of pathogenesis-related protein 1 [Cucumis sativus] | [more] |
XP_022952656.1 | 8.5e-60 | 66.46 | pathogenesis-related protein PRB1-2-like [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
P09042 | 3.7e-50 | 55.56 | Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3 | [more] |
P08299 | 3.5e-48 | 55.56 | Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1 | [more] |
P07053 | 5.9e-48 | 55.56 | Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | [more] |
P33154 | 5.9e-48 | 58.78 | Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1... | [more] |
P11670 | 1.3e-47 | 54.61 | Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S... | [more] |