Lag0016003 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016003
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionpathogenesis-related protein 1-like
Locationchr12: 31131793 .. 31132278 (-)
RNA-Seq ExpressionLag0016003
SyntenyLag0016003
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCTTGTCTCCCTCATTTTTGGCTTGAGCTTGATGGTGGTAACTCCCTCCTGTCTGGCTCAAGACTCACCTGAGGATTTCGTGAATGCCCATAACACGGCTCGTGCCAAGGTTGGCGTCGGACCCGTGGAGTGGGATGAAAAAGTAGCAAGCTATGCTCGACAATATGCGAGCGAACGCATGAAGGACTGTGAATTGATACACTCGACTGGTGGTCCATATGGGGAAAATCTTGCATGGGGCATGCCAGACATGTCAGGCACTAGTGCAGTTGAGATGTGGTTCAATGAAAAAGAATTTTACGATTATGACACTGATACATGTGCAGATGGTAAGATGTGTGGCCATTACACCCAGGTGGTTTGGAAAAATTCAATCAGGATTGGATGTGCAAAAGTGAAATGCATGAGCGCAAATGCTGGTTCATTCATCACCTGCAACTATGATCCCGTTGGCAATATCATTGGCCAAAAGCCATTTTGA

mRNA sequence

ATGGATCTTGTCTCCCTCATTTTTGGCTTGAGCTTGATGGTGGTAACTCCCTCCTGTCTGGCTCAAGACTCACCTGAGGATTTCGTGAATGCCCATAACACGGCTCGTGCCAAGGTTGGCGTCGGACCCGTGGAGTGGGATGAAAAAGTAGCAAGCTATGCTCGACAATATGCGAGCGAACGCATGAAGGACTGTGAATTGATACACTCGACTGGTGGTCCATATGGGGAAAATCTTGCATGGGGCATGCCAGACATGTCAGGCACTAGTGCAGTTGAGATGTGGTTCAATGAAAAAGAATTTTACGATTATGACACTGATACATGTGCAGATGGTAAGATGTGTGGCCATTACACCCAGGTGGTTTGGAAAAATTCAATCAGGATTGGATGTGCAAAAGTGAAATGCATGAGCGCAAATGCTGGTTCATTCATCACCTGCAACTATGATCCCGTTGGCAATATCATTGGCCAAAAGCCATTTTGA

Coding sequence (CDS)

ATGGATCTTGTCTCCCTCATTTTTGGCTTGAGCTTGATGGTGGTAACTCCCTCCTGTCTGGCTCAAGACTCACCTGAGGATTTCGTGAATGCCCATAACACGGCTCGTGCCAAGGTTGGCGTCGGACCCGTGGAGTGGGATGAAAAAGTAGCAAGCTATGCTCGACAATATGCGAGCGAACGCATGAAGGACTGTGAATTGATACACTCGACTGGTGGTCCATATGGGGAAAATCTTGCATGGGGCATGCCAGACATGTCAGGCACTAGTGCAGTTGAGATGTGGTTCAATGAAAAAGAATTTTACGATTATGACACTGATACATGTGCAGATGGTAAGATGTGTGGCCATTACACCCAGGTGGTTTGGAAAAATTCAATCAGGATTGGATGTGCAAAAGTGAAATGCATGAGCGCAAATGCTGGTTCATTCATCACCTGCAACTATGATCCCGTTGGCAATATCATTGGCCAAAAGCCATTTTGA

Protein sequence

MDLVSLIFGLSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF
Homology
BLAST of Lag0016003 vs. NCBI nr
Match: XP_008455064.1 (PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa] >TYK06836.1 pathogenesis-related protein PRB1-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 4.8e-63
Identity = 113/166 (68.07%), Postives = 140/166 (84.34%), Query Frame = 0

Query: 1   MDLVSLIFGLSL-----MVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYAR 60
           MD++ L   LSL      ++ PS LAQDSP DFVNAHN ARA+VGVGPV WDE+VAS+AR
Sbjct: 1   MDVLKLSLSLSLFCVLTFIMLPSSLAQDSPRDFVNAHNAARAQVGVGPVHWDERVASFAR 60

Query: 61  QYASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMC 120
           QYA++R+ DC L+HS GGPYGEN+AWGMPD+SGT+AV+MW NEK+FY+Y ++TCA GK+C
Sbjct: 61  QYANQRINDCRLVHS-GGPYGENIAWGMPDLSGTAAVQMWVNEKQFYNYGSNTCAAGKVC 120

Query: 121 GHYTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           GHYTQVVW+NS+RIGCAKV+C + N G+FI CNY+P GNIIGQKP+
Sbjct: 121 GHYTQVVWRNSVRIGCAKVRCTN-NRGTFIICNYEPRGNIIGQKPY 164

BLAST of Lag0016003 vs. NCBI nr
Match: XP_038887491.1 (pathogenesis-related protein 1-like [Benincasa hispida])

HSP 1 Score: 249.2 bits (635), Expect = 2.4e-62
Identity = 112/164 (68.29%), Postives = 140/164 (85.37%), Query Frame = 0

Query: 1   MDLVSL---IFGLSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQY 60
           MDL+ L   +F +    + PS LAQDSP+D++NAHN ARA+VGVGPV+WDE+VAS+ARQY
Sbjct: 1   MDLLKLSLSLFCVLSFTMLPSSLAQDSPQDYLNAHNAARAQVGVGPVQWDERVASFARQY 60

Query: 61  ASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGH 120
           A++R+ DC+LIHS GGPYGEN+AWG PD+SGT+AV+MW NEK+FY+Y T+TCA GK+CGH
Sbjct: 61  ANQRINDCKLIHS-GGPYGENIAWGWPDLSGTAAVQMWVNEKQFYNYGTNTCAAGKVCGH 120

Query: 121 YTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           YTQVVW+ S+RIGCAKVKC + N G+FI CNYDP GNIIGQKP+
Sbjct: 121 YTQVVWRKSVRIGCAKVKCTN-NGGTFIICNYDPRGNIIGQKPY 162

BLAST of Lag0016003 vs. NCBI nr
Match: XP_022972506.1 (pathogenesis-related protein PR-1 type-like [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 109/165 (66.06%), Postives = 137/165 (83.03%), Query Frame = 0

Query: 1   MDLVSLIFGLSLMVVT----PSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQ 60
           MDL  L   L  +V++     S LAQDSP+DFVNAHN ARA+VGVGP+ WDE+VAS+ARQ
Sbjct: 1   MDLFKLSLSLFYVVLSFAMFHSSLAQDSPQDFVNAHNAARAQVGVGPIRWDERVASFARQ 60

Query: 61  YASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCG 120
           YA++R+ DC L+HS GGPYGEN+AWG PD+SGT+AV MW +EK+FY+  T+TCA GK+CG
Sbjct: 61  YANQRINDCRLVHS-GGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSTNTCAAGKVCG 120

Query: 121 HYTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           HYTQVVW+NS+RIGCAKV+C + N G+FITCNYDP GN++GQ+PF
Sbjct: 121 HYTQVVWRNSVRIGCAKVRCTN-NRGTFITCNYDPPGNVVGQRPF 163

BLAST of Lag0016003 vs. NCBI nr
Match: XP_011658861.1 (basic form of pathogenesis-related protein 1 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 2.9e-60
Identity = 110/166 (66.27%), Postives = 136/166 (81.93%), Query Frame = 0

Query: 1   MDLVSLIFGLSLMVV-----TPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYAR 60
           MD++ L   LSL  V      PS LAQDSP+DF++AHNTARA+ GV PV+WDE VAS+A 
Sbjct: 1   MDVLKLSLSLSLFCVLTFFMLPSSLAQDSPQDFLDAHNTARAQDGVEPVQWDETVASFAL 60

Query: 61  QYASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMC 120
           QYA++R+ DC L+HS GGPYGEN+AWGMPD+SGT+AVEMW NEKEFYDY ++TCA  ++C
Sbjct: 61  QYANQRINDCSLVHS-GGPYGENIAWGMPDLSGTAAVEMWVNEKEFYDYGSNTCAASRVC 120

Query: 121 GHYTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           GHYTQVVW+NS+RIGCAKV C + N G+FITCNYDP GN +GQ+P+
Sbjct: 121 GHYTQVVWRNSVRIGCAKVICTN-NGGTFITCNYDPPGNFVGQRPY 164

BLAST of Lag0016003 vs. NCBI nr
Match: XP_022952656.1 (pathogenesis-related protein PRB1-2-like [Cucurbita moschata])

HSP 1 Score: 240.7 bits (613), Expect = 8.5e-60
Identity = 109/164 (66.46%), Postives = 137/164 (83.54%), Query Frame = 0

Query: 1   MDLVSL---IFGLSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQY 60
           MDL  L   +F +S   + PS LAQDSP+DFVNAHN ARA+VGVGPV+WDEKVAS+ARQY
Sbjct: 1   MDLFKLSLFLFYVSSFTMLPSSLAQDSPQDFVNAHNAARAQVGVGPVKWDEKVASFARQY 60

Query: 61  ASERMKDCELIHSTGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGH 120
           A++R+ DC L+HS+ GPYGEN+AWG  D+SG +AV MW +EK+FY+  T+TCA GK+CGH
Sbjct: 61  ANQRINDCRLMHSS-GPYGENIAWGSSDLSGIAAVRMWVDEKQFYNPRTNTCATGKVCGH 120

Query: 121 YTQVVWKNSIRIGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           YTQVVW++S+RIGCAKVKC + N G+FITCNYDP GN++GQ+PF
Sbjct: 121 YTQVVWRSSVRIGCAKVKCTN-NRGTFITCNYDPPGNVVGQRPF 162

BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match: P09042 (Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3)

HSP 1 Score: 199.1 bits (505), Expect = 3.7e-50
Identity = 85/153 (55.56%), Postives = 120/153 (78.43%), Query Frame = 0

Query: 10  LSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIH 69
           L  ++++ SC AQ+S +D+++AHNTARA VGV P+ WD++VA+YA+ YAS+   DC L+H
Sbjct: 19  LLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVH 78

Query: 70  STGGPYGENLAWGMPD-MSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIR 129
           S  G YGENLAWG  D ++   AVEMW NEK++Y +D++TCA G++CGHYTQVVW+NS+R
Sbjct: 79  S-HGQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVR 138

Query: 130 IGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           +GCA+V+C   N G  ++CNYDP GN+IG+ P+
Sbjct: 139 VGCARVQC--NNGGYIVSCNYDPPGNVIGKSPY 168

BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match: P08299 (Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.5e-48
Identity = 85/153 (55.56%), Postives = 118/153 (77.12%), Query Frame = 0

Query: 10  LSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIH 69
           L  +V++ SC AQ+S +D+++AHNTARA VGV P+ WD++VA+YA+ YAS+   DC L+H
Sbjct: 19  LLFLVISHSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVH 78

Query: 70  STGGPYGENLAWGMPD-MSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIR 129
           S  G YGENLA G  D M+   AVEMW +EK++YD+D++TCA G++CGHYTQVVW+NS+R
Sbjct: 79  S-HGQYGENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVR 138

Query: 130 IGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           +GCA+V+C   N G  ++CNYDP GN  G+ P+
Sbjct: 139 VGCARVQC--NNGGYVVSCNYDPPGNYRGESPY 168

BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match: P07053 (Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-48
Identity = 85/153 (55.56%), Postives = 116/153 (75.82%), Query Frame = 0

Query: 10  LSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIH 69
           L  ++++ S  AQ+S +D+++AHNTARA VGV P+ WD  VA+YA+ Y S+   DC L+H
Sbjct: 19  LLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVH 78

Query: 70  STGGPYGENLAWGMPD-MSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIR 129
           S  G YGENLA G  D M+   AVEMW +EK++YD+D++TCA G++CGHYTQVVW+NS+R
Sbjct: 79  S-HGQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVR 138

Query: 130 IGCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           +GCA+VKC   N G  ++CNYDP GN+IGQ P+
Sbjct: 139 VGCARVKC--NNGGYVVSCNYDPPGNVIGQSPY 168

BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match: P33154 (Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-48
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 0

Query: 14  VVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIHSTGG 73
           +V PS  AQDSP+D++  HN AR  VGVGP++WDE+VA+YAR YA +   +C LIHS GG
Sbjct: 20  LVLPS-KAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNCRLIHS-GG 79

Query: 74  PYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIRIGCAK 133
           PYGENLAWG  D+SG SAV MW +EK  Y+Y  +TC    +CGHYTQVVW+ S+R+GCAK
Sbjct: 80  PYGENLAWGSGDLSGVSAVNMWVSEKANYNYAANTC--NGVCGHYTQVVWRKSVRLGCAK 139

Query: 134 VKCMSANAGSFITCNYDPVGNIIGQKPF 162
           V+C   N G+ I+CNYDP GN + +KP+
Sbjct: 140 VRC--NNGGTIISCNYDPRGNYVNEKPY 161

BLAST of Lag0016003 vs. ExPASy Swiss-Prot
Match: P11670 (Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-47
Identity = 83/152 (54.61%), Postives = 116/152 (76.32%), Query Frame = 0

Query: 10  LSLMVVTPSCLAQDSPEDFVNAHNTARAKVGVGPVEWDEKVASYARQYASERMKDCELIH 69
           ++  ++  S  AQ+SP+D++N HN AR +VGVGP+ WD ++A+YA+ YA++R+ DC +IH
Sbjct: 12  ITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIH 71

Query: 70  STGGPYGENLAWGMPDMSGTSAVEMWFNEKEFYDYDTDTCADGKMCGHYTQVVWKNSIRI 129
           S  GPYGENLA   P ++   AV+MW +EK FYDY++++C  G +CGHYTQVVW+NS+R+
Sbjct: 72  S-HGPYGENLAAAFPQLNAAGAVKMWVDEKRFYDYNSNSCVGG-VCGHYTQVVWRNSVRL 131

Query: 130 GCAKVKCMSANAGSFITCNYDPVGNIIGQKPF 162
           GCA+V+  S N   FITCNYDP GN IGQ+PF
Sbjct: 132 GCARVR--SNNGWFFITCNYDPPGNFIGQRPF 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008455064.14.8e-6368.07PREDICTED: pathogenesis-related protein PRB1-2-like [Cucumis melo] >KAA0031384.1... [more]
XP_038887491.12.4e-6268.29pathogenesis-related protein 1-like [Benincasa hispida][more]
XP_022972506.11.7e-6066.06pathogenesis-related protein PR-1 type-like [Cucurbita maxima][more]
XP_011658861.12.9e-6066.27basic form of pathogenesis-related protein 1 [Cucumis sativus][more]
XP_022952656.18.5e-6066.46pathogenesis-related protein PRB1-2-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
P090423.7e-5055.56Pathogenesis-related protein 1C OS=Nicotiana tabacum OX=4097 PE=2 SV=3[more]
P082993.5e-4855.56Pathogenesis-related protein 1A OS=Nicotiana tabacum OX=4097 PE=1 SV=1[more]
P070535.9e-4855.56Pathogenesis-related protein 1B OS=Nicotiana tabacum OX=4097 PE=2 SV=1[more]
P331545.9e-4858.78Pathogenesis-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=At2g14610 PE=1... [more]
P116701.3e-4754.61Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum OX=4097 PE=3 S... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001283Cysteine-rich secretory protein-relatedPRINTSPR00837V5TPXLIKEcoord: 44..62
score: 31.91
coord: 115..131
score: 63.59
coord: 144..157
score: 52.26
coord: 91..104
score: 40.23
IPR001283Cysteine-rich secretory protein-relatedPANTHERPTHR10334CYSTEINE-RICH SECRETORY PROTEIN-RELATEDcoord: 19..161
IPR014044CAP domainSMARTSM00198SCP_3coord: 23..157
e-value: 6.7E-61
score: 218.3
IPR014044CAP domainPFAMPF00188CAPcoord: 29..149
e-value: 1.0E-21
score: 78.1
IPR035940CAP superfamilyGENE3D3.40.33.10CAPcoord: 19..161
e-value: 5.9E-45
score: 155.1
IPR035940CAP superfamilySUPERFAMILY55797PR-1-likecoord: 19..160
NoneNo IPR availablePANTHERPTHR10334:SF488PATHOGENESIS-RELATED PROTEIN 1coord: 19..161
NoneNo IPR availableCDDcd05381CAP_PR-1coord: 25..161
e-value: 2.14366E-84
score: 242.154
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01009CRISP_1coord: 116..126
IPR018244Allergen V5/Tpx-1-related, conserved sitePROSITEPS01010CRISP_2coord: 144..155

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016003.1Lag0016003.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005615 extracellular space
cellular_component GO:0005576 extracellular region