Lag0015980 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015980
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr12: 30684240 .. 30685861 (-)
RNA-Seq Expression	Lag0015980
Synteny	Lag0015980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGATTTTGGTGGAGTGCGGGAAAGGAGGATCGGGGGATTCATTGGGTGAGTTGGAAGACCGTATGTAAGTCAAAATGCTATGGTGGCATGGGCTATAAGGATTTTGAGATCTTTAATCAGGCTTTCTTGGCAAAGCAGTGCTGGAGGATTATACAACACCCATCCTCGTTCGTCTCACGTGTTCTAAAGGGCAGGTATTTCCTCATCACAGATTTCTTGGAAGTAAGGGTTGGGTCAAAACCATCCTTTAATTGGAGGAGCTTAATTTGGGGAGGGAGCTCTTGGAGGATGGCATGCATTGGCAAATAAGAAATGGTGAAAATGTTCGTGTTTATGGAACCAATTGGATCCTAGATGATTTCTGTCTCAAAGTACACTCCTCGGGTATCTTGGTGCCTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTGGGTAGTTGAGCTAGTTACAGTCTCTGGGCAGTGAAATGAGGAGCTTATTCGACATCACTTCAACCCTCATGAGGTGAGTCTTATATTTACTATTCCTTTACGAAATGTCTTGTCTGAGAATAGAATTATTTGGCATTATGAGAAATCTGGTATATTTTCGTTAAAAGTGGGTACCGGCTAGGCCAAATGGCTTTGCTTTCTAAATCCCCGTCTCCATCATCGCATGAATCAATCCTTAGTTTGTGGAAGGGGTGTTGGAAAATGATGATCCCAAATAAAATTAAATTTGTTTTTTGTAGAGACTTTGTTTTGATCGTTTGCCTACCGTTGATAATCTGACTGCCTGAGGTGTTGATGTGTTGAATGTGTGTGGTCTGCATGTGTGGCAAGTAGGGAGAGTCTAGTATGCATGTTTTTTTGGCAATACAAGTCTTTCCGAGAGAATTTGATGGACTTTGAATTTGGGATGTTGTTGCAAAATATGCGGGTGGGAGCCAAGTTTCACCTTCTTAGAGATGTGAAGGATAAGGTAGGTTGGGTGAAGTTTGAGGTTTTCGTAGTGGTTCTGTGGGTTGTATGGAATTTCTGCAATCAGTGGAAATTCAAGGGCGTTGCTCCTACTGTTGGAATTGTGGATTGGGTCGCAAGTTATATATCTCTGCGTTTTGAAAGGTTGTTCGTGTTGGCAGACTTGGTGTGGGTTGTGGGGCTGTTTGGAATGTTGTAAGGTGGATTTCCCCAAAGATTGGCTGGTATAAAGTAAATGTAGATGCAACGTTTCGAGAGGACGATCTTCGAGCGAGATCGGGAATAATTGTTAGGGATTCCGATGGGCATGTTATGCTCTCTGCAATAGTGGTGCATGGCCATATTAGGAGCTCAAATATGGTTGAAAGAATGGATGCAATTGATGGCTTGCGGATTGTAGTGGATATGAGGTTGCTGTCGTTGGTGCCTGAGACAGATTCCAACCGTATAGTGTCCCTGATTCAATGTGAGCAGAAGGTGATGGTCATATTTGACGTGGGAAGGATGGTGACTGGGTTACGTGGGGAAGTGTCTGGTCCTTCTCTGTGTCGGTTGCAAATTCATTCGAAAGGAGGGAAATAG

mRNA sequence

ATGGCTCGATTTTGGTGGAGTGCGGGAAAGGAGGATCGGGGGATTCATTGGGTGAGTTGGAAGACCGTATGTAAGTCAAAATGCTATGGTGGCATGGGCTATAAGGATTTTGAGATCTTTAATCAGGCTTTCTTGGCAAAGCAGTGCTGGAGGATTATACAACACCCATCCTCGTTCGTCTCACGTGTTCTAAAGGGCAGACTTGGTGTGGGTTGTGGGGCTGTTTGGAATGTTGTAAGGTGGATTTCCCCAAAGATTGGCTGGTATAAAGTAAATGTAGATGCAACGTTTCGAGAGGACGATCTTCGAGCGAGATCGGGAATAATTGTTAGGGATTCCGATGGGCATGTTATGCTCTCTGCAATAGTGGTGCATGGCCATATTAGGAGCTCAAATATGGTTGAAAGAATGGATGCAATTGATGGCTTGCGGATTGTAGTGGATATGAGGTTGCTGTCGTTGGTGCCTGAGACAGATTCCAACCGTATAGTGTCCCTGATTCAATGTGAGCAGAAGGTGATGGTCATATTTGACGTGGGAAGGATGGTGACTGGGTTACGTGGGGAAGTGTCTGGTCCTTCTCTGTGTCGGTTGCAAATTCATTCGAAAGGAGGGAAATAG

Coding sequence (CDS)

ATGGCTCGATTTTGGTGGAGTGCGGGAAAGGAGGATCGGGGGATTCATTGGGTGAGTTGGAAGACCGTATGTAAGTCAAAATGCTATGGTGGCATGGGCTATAAGGATTTTGAGATCTTTAATCAGGCTTTCTTGGCAAAGCAGTGCTGGAGGATTATACAACACCCATCCTCGTTCGTCTCACGTGTTCTAAAGGGCAGACTTGGTGTGGGTTGTGGGGCTGTTTGGAATGTTGTAAGGTGGATTTCCCCAAAGATTGGCTGGTATAAAGTAAATGTAGATGCAACGTTTCGAGAGGACGATCTTCGAGCGAGATCGGGAATAATTGTTAGGGATTCCGATGGGCATGTTATGCTCTCTGCAATAGTGGTGCATGGCCATATTAGGAGCTCAAATATGGTTGAAAGAATGGATGCAATTGATGGCTTGCGGATTGTAGTGGATATGAGGTTGCTGTCGTTGGTGCCTGAGACAGATTCCAACCGTATAGTGTCCCTGATTCAATGTGAGCAGAAGGTGATGGTCATATTTGACGTGGGAAGGATGGTGACTGGGTTACGTGGGGAAGTGTCTGGTCCTTCTCTGTGTCGGTTGCAAATTCATTCGAAAGGAGGGAAATAG

Protein sequence

MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGCGAVWNVVRWISPKIGWYKVNVDATFREDDLRARSGIIVRDSDGHVMLSAIVVHGHIRSSNMVERMDAIDGLRIVVDMRLLSLVPETDSNRIVSLIQCEQKVMVIFDVGRMVTGLRGEVSGPSLCRLQIHSKGGK

Homology

[Close]

BLAST of Lag0015980 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 2   ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVS 61
           ARFWW + KED+ IHWV+W ++   KC GGMG++D E+FN+A LAKQCWRI+ HP+S +S
Sbjct: 616 ARFWWGSSKEDKKIHWVAWNSLYLPKCEGGMGFRDLELFNKALLAKQCWRILNHPNSMLS 675

Query: 62  RVLKGRLGVGC-----------GAVWNVVRW----ISPKIGWYKVNVDATF 98
           RVLKGR    C             +W  + W    +   + W   N D+ F
Sbjct: 676 RVLKGRYFKDCSFMEAKISGNPSYIWRSILWGRDLLKKGLRWRIGNGDSVF 726

[Close]

BLAST of Lag0015980 vs. NCBI nr
Match: VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1   MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFV 60
           MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V
Sbjct: 754 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 813

Query: 61  SRVLKGR-----------LGVGCGAVWNVVRW 82
           +R+ + R           +G     +W  ++W
Sbjct: 814 ARIFRARYHPSVPFLEAEVGTNPSFIWRSLQW 845

[Close]

BLAST of Lag0015980 vs. NCBI nr
Match: ONI09819.1 (hypothetical protein PRUPE_4G011200 [Prunus persica])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1   MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFV 60
           MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V
Sbjct: 775 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 834

Query: 61  SRVLKGR-----------LGVGCGAVWNVVRW 82
           +R+ + R           +G     +W  ++W
Sbjct: 835 ARIFRARYHPSVPFLEAEVGTNPSFIWGSLQW 866

[Close]

BLAST of Lag0015980 vs. NCBI nr
Match: ONI01138.1 (hypothetical protein PRUPE_6G123900 [Prunus persica])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1   MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFV 60
           MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V
Sbjct: 488 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 547

Query: 61  SRVLKGR-----------LGVGCGAVWNVVRW 82
           +R+ + R           +G     +W  ++W
Sbjct: 548 ARIFRARYHPSVPFLEAEVGTNPSFIWRSLQW 579

[Close]

BLAST of Lag0015980 vs. NCBI nr
Match: XP_022159001.1 (uncharacterized protein LOC111025446 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 9.3e-19
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 2   ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVS 61
           ARFWW +G ED+ IHW+ W T+ K K  GGMG++D E+FN+A LAKQ WRI+ +P S ++
Sbjct: 19  ARFWWRSGGEDKKIHWLGWNTLRKPKFCGGMGFRDLELFNKALLAKQSWRILNNPDSVLA 78

Query: 62  RVLKGRLGVGCGAVWNVVRWISPKIGWYKVNVDATFREDDLRARSG 108
           +VLKGR    C  +   +R  SP   W  +   +   +D LR R G
Sbjct: 79  KVLKGRYFRNCDLLQAEIRG-SPSFIWRSLVWGSELLKDGLRWRIG 123

[Close]

BLAST of Lag0015980 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-13
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  MARFWWSAGKEDRGIHWVSWKTVCKSK-CYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSF 60
          M  FWWS+ +  R I WV+W+ +CKSK   GG+G++D   FNQA LAKQ +RII  P + 
Sbjct: 25 MTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTL 84

Query: 61 VSRVLKGR 68
          +SR+L+ R
Sbjct: 85 LSRLLRSR 92

[Close]

BLAST of Lag0015980 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.0e-04
Identity = 27/104 (25.96%), Postives = 47/104 (45.19%), Query Frame = 0


Query: 14  GIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLGVGC- 73
           G   + W T+     + G  ++   IF +    +   + ++  +  V R   G + VG  
Sbjct: 383 GCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHSGNVLVGIT 442

Query: 74  -GAVWNVVRWISPKIGWYKVNVDATFREDDLRARSGIIVRDSDG 116
              V  ++ W+SP +GW KVN D   R +   A +G ++RD  G
Sbjct: 443 QPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTG 486

[Close]

BLAST of Lag0015980 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-21
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 2   ARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVS 61
           ARFWW + KED+ IHWV+W ++   KC GGMG++D E+FN+A LAKQCWRI+ HP+S +S
Sbjct: 616 ARFWWGSSKEDKKIHWVAWNSLYLPKCEGGMGFRDLELFNKALLAKQCWRILNHPNSMLS 675

Query: 62  RVLKGRLGVGC-----------GAVWNVVRW----ISPKIGWYKVNVDATF 98
           RVLKGR    C             +W  + W    +   + W   N D+ F
Sbjct: 676 RVLKGRYFKDCSFMEAKISGNPSYIWRSILWGRDLLKKGLRWRIGNGDSVF 726

[Close]

BLAST of Lag0015980 vs. ExPASy TrEMBL
Match: M5WJW2 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G011200 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1   MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFV 60
           MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V
Sbjct: 775 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 834

Query: 61  SRVLKGR-----------LGVGCGAVWNVVRW 82
           +R+ + R           +G     +W  ++W
Sbjct: 835 ARIFRARYHPSVPFLEAEVGTNPSFIWGSLQW 866

[Close]

BLAST of Lag0015980 vs. ExPASy TrEMBL
Match: A0A5E4FZN9 (PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1   MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFV 60
           MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V
Sbjct: 754 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 813

Query: 61  SRVLKGR-----------LGVGCGAVWNVVRW 82
           +R+ + R           +G     +W  ++W
Sbjct: 814 ARIFRARYHPSVPFLEAEVGTNPSFIWRSLQW 845

[Close]

BLAST of Lag0015980 vs. ExPASy TrEMBL
Match: M5W5F3 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026368mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1   MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFV 60
           MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V
Sbjct: 525 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 584

Query: 61  SRVLKGR-----------LGVGCGAVWNVVRW 82
           +R+ + R           +G     +W  ++W
Sbjct: 585 ARIFRARYHPSVPFLEAEVGTNPSFIWRSLQW 616

[Close]

BLAST of Lag0015980 vs. ExPASy TrEMBL
Match: A0A251NPF0 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G123900 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 1   MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFV 60
           MARFWW+  K+ RGIHWV W+ +CKSK  GG+G++D E FNQA LAKQCWRI++ P S V
Sbjct: 488 MARFWWAKAKDKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLV 547

Query: 61  SRVLKGR-----------LGVGCGAVWNVVRW 82
           +R+ + R           +G     +W  ++W
Sbjct: 548 ARIFRARYHPSVPFLEAEVGTNPSFIWRSLQW 579

[Close]

BLAST of Lag0015980 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.9e-14
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  MARFWWSAGKEDRGIHWVSWKTVCKSK-CYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSF 60
          M  FWWS+ +  R I WV+W+ +CKSK   GG+G++D   FNQA LAKQ +RII  P + 
Sbjct: 25 MTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTL 84

Query: 61 VSRVLKGR 68
          +SR+L+ R
Sbjct: 85 LSRLLRSR 92

[Close]

BLAST of Lag0015980 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 7.4e-14
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 1  MARFWWSAGKEDRGIHWVSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFV 60
          +A FWW   +E +G+HW +W  +   K  GG+G+KD E FN A L KQ WR++  P S +
Sbjct: 25 LADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLM 84

Query: 61 SRVLKGR 68
          ++V K R
Sbjct: 85 AKVFKSR 91

[Close]

BLAST of Lag0015980 vs. TAIR 10
Match: AT1G27870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04
Identity = 17/41 (41.46%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 80  RWISPKIGWYKVNVDATFREDDLRARSGIIVRDSDGHVMLS 121
           RW  P+ GW K N D +F   D+++++G +VRDS+G  +L+
Sbjct: 51  RWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLA 91

[Close]

BLAST of Lag0015980 vs. TAIR 10
Match: AT5G42905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 27/103 (26.21%), Postives = 47/103 (45.63%), Query Frame = 0


Query: 18  VSWKTVCKSKCYGGMGYKDFEIFNQAFLAKQCWRIIQHPSSFVSRVLKGRLG---VGC-- 77
           + W T+     + G  ++   IF +     +C   ++    +V  V +  LG   VG   
Sbjct: 75  IPWSTIFAVIIWWGWKWRCSNIFGE---NTKCRDRVKFVKEWVVEVYRAHLGNALVGSTQ 134

Query: 78  GAVWNVVRWISPKIGWYKVNVDATFREDDLRARSGIIVRDSDG 116
             V  ++ W+ P +GW KVN D   R +   A +G ++RD +G
Sbjct: 135 PRVERLIGWVLPCVGWVKVNTDGASRGNPGLASAGGVLRDCEG 174

The following BLAST results are available for this feature:

BLAST of Lag0015980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150918.1	7.6e-21	44.14	uncharacterized protein LOC111018954 [Momordica charantia]	[more]
VVA32947.1	3.2e-19	46.74	PREDICTED: retrotransposon [Prunus dulcis]	[more]
ONI09819.1	3.2e-19	46.74	hypothetical protein PRUPE_4G011200 [Prunus persica]	[more]
ONI01138.1	3.2e-19	46.74	hypothetical protein PRUPE_6G123900 [Prunus persica]	[more]
XP_022159001.1	9.3e-19	45.28	uncharacterized protein LOC111025446 [Momordica charantia]	[more]

BLAST of Lag0015980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	2.7e-13	50.00	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0C2F6	4.0e-04	25.96	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Lag0015980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAR4	3.7e-21	44.14	uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
M5WJW2	1.6e-19	46.74	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]
A0A5E4FZN9	1.6e-19	46.74	PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1	[more]
M5W5F3	1.6e-19	46.74	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A251NPF0	1.6e-19	46.74	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]

BLAST of Lag0015980 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00310.1	1.9e-14	50.00	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G29090.1	7.4e-14	43.28	Ribonuclease H-like superfamily protein	[more]
AT1G27870.1	1.1e-04	41.46	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G42905.1	1.8e-04	26.21	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 88..189 e-value: 1.3E-5 score: 27.3
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 92..173 e-value: 2.3E-10 score: 40.4
None	No IPR available	PANTHER	PTHR47074	BNAC02G40300D PROTEIN	coord: 78..172
None	No IPR available	PANTHER	PTHR47074:SF37	PROTEIN, PUTATIVE-RELATED	coord: 78..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015980.1	Lag0015980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity