Lag0015974 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015974
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAA_kinase domain-containing protein
Locationchr12: 30611779 .. 30612282 (+)
RNA-Seq ExpressionLag0015974
SyntenyLag0015974
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAAGATCTAGGAGAAACACTGTCGCTTCCTCCTCCTCCGCTCCTTTCGACCCCAATAGGTTCATAAGTAGCAAGGCCGTAGAACGATTTGAGAGATATGTAGAGAGTAAAAGCTTTATCCCTGAGAGAGGCTTTAGCCCCGACCCTGAGGTGCAACCAAATTTAGTGAATAATATCGTTGCGCAAGATTGGGGCCACTTTGTTAGTCACCCTGAGCCTGGGGTAGCATCAATAGTGAGGGAGTTTTATGCGAACATGGAAGAATCTTCTTCATCGTTTGTTAGGAGACACATTGTCCCTTTCGACTCCCAAACCATCAACAGATTCTATAGCTTACCCAACATTGAGAGGGACGAATACAACACATACCTTCTAGGCTATTTAGACGTTAATGAGGTCATCCAGATGGTATGTAGGCCAGGGGCCGAGTGGGTTCTGACCGGAGCGAAGGTTGTGAGATTTAGGACCATCGATTTGTTCGTGGATTACATGGCTTGA

mRNA sequence

ATGAACAAAAGATCTAGGAGAAACACTGTCGCTTCCTCCTCCTCCGCTCCTTTCGACCCCAATAGGTTCATAAGTAGCAAGGCCGTAGAACGATTTGAGAGATATGTAGAGAGTAAAAGCTTTATCCCTGAGAGAGGCTTTAGCCCCGACCCTGAGGTGCAACCAAATTTAGTGAATAATATCGTTGCGCAAGATTGGGGCCACTTTGTTAGTCACCCTGAGCCTGGGGTAGCATCAATAGTGAGGGAGTTTTATGCGAACATGGAAGAATCTTCTTCATCGTTTGTTAGGAGACACATTGTCCCTTTCGACTCCCAAACCATCAACAGATTCTATAGCTTACCCAACATTGAGAGGGACGAATACAACACATACCTTCTAGGCTATTTAGACGTTAATGAGGTCATCCAGATGGTATGTAGGCCAGGGGCCGAGTGGGTTCTGACCGGAGCGAAGGTTGTGAGATTTAGGACCATCGATTTGTTCGTGGATTACATGGCTTGA

Coding sequence (CDS)

ATGAACAAAAGATCTAGGAGAAACACTGTCGCTTCCTCCTCCTCCGCTCCTTTCGACCCCAATAGGTTCATAAGTAGCAAGGCCGTAGAACGATTTGAGAGATATGTAGAGAGTAAAAGCTTTATCCCTGAGAGAGGCTTTAGCCCCGACCCTGAGGTGCAACCAAATTTAGTGAATAATATCGTTGCGCAAGATTGGGGCCACTTTGTTAGTCACCCTGAGCCTGGGGTAGCATCAATAGTGAGGGAGTTTTATGCGAACATGGAAGAATCTTCTTCATCGTTTGTTAGGAGACACATTGTCCCTTTCGACTCCCAAACCATCAACAGATTCTATAGCTTACCCAACATTGAGAGGGACGAATACAACACATACCTTCTAGGCTATTTAGACGTTAATGAGGTCATCCAGATGGTATGTAGGCCAGGGGCCGAGTGGGTTCTGACCGGAGCGAAGGTTGTGAGATTTAGGACCATCGATTTGTTCGTGGATTACATGGCTTGA

Protein sequence

MNKRSRRNTVASSSSAPFDPNRFISSKAVERFERYVESKSFIPERGFSPDPEVQPNLVNNIVAQDWGHFVSHPEPGVASIVREFYANMEESSSSFVRRHIVPFDSQTINRFYSLPNIERDEYNTYLLGYLDVNEVIQMVCRPGAEWVLTGAKVVRFRTIDLFVDYMA
Homology
[Close]
BLAST of Lag0015974 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 2.2e-34
Identity = 79/164 (48.17%), Postives = 108/164 (65.85%), Query Frame = 0 

Query: 1   MNKRSRRNTVASSSSAPFDPNRFISSKAVERFERYVESKSFIPERGFSPDPEVQPNLVNN 60
           M+ +++R   A SS   F+ ++FIS  A +R+ + V   S IPERG +P    QP L  N
Sbjct: 2   MSSKTKRARSALSSEGAFNRHKFISKDAADRYRKLVVKSSVIPERGLAPCEVHQPQLFQN 61

Query: 61  IVAQDWGHFVSHPEPGVASIVREFYANMEESSS-SFVRRHIVPFDSQTINRFYSLPNIER 120
           I+ + W  FV  PEP V SIVREFYANM E SS SFVR   V FD  TINR+Y LPN ER
Sbjct: 62  IMQRGWSDFVKQPEPAVLSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFER 121

Query: 121 DEYNTYLLGYLDVNEVIQMVCRPGAEWVLTGAKVVRFRTIDLFV 164
           DEY+ Y   ++DV+++I+ +C+PGAEWV+   + +RF++ +L V
Sbjct: 122 DEYDIYASEHVDVHQIIRELCQPGAEWVINPGEPIRFKSSNLTV 165

[Close]
BLAST of Lag0015974 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-33
Identity = 77/164 (46.95%), Postives = 108/164 (65.85%), Query Frame = 0 

Query: 1   MNKRSRRNTVASSSSAPFDPNRFISSKAVERFERYVESKSFIPERGFSPDPEVQPNLVNN 60
           M+ +++R   A SS   F+ ++FIS  A + ++++V   S IPERG +P    QP L  N
Sbjct: 2   MSSKTKRARSALSSEGAFNRHKFISKDAADGYKKHVVKSSVIPERGLAPCEVHQPQLYQN 61

Query: 61  IVAQDWGHFVSHPEPGVASIVREFYANMEESSS-SFVRRHIVPFDSQTINRFYSLPNIER 120
           I+ + W  FV  PEP V SIVREFYANM E SS SFVR   V FD  TINR+Y LPN ER
Sbjct: 62  IMQRGWSDFVKQPEPAVVSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFER 121

Query: 121 DEYNTYLLGYLDVNEVIQMVCRPGAEWVLTGAKVVRFRTIDLFV 164
           DEY  Y   ++DV+++I+ +C+PGAEW++   + +RF++ +L V
Sbjct: 122 DEYAIYASEHVDVHQIIRELCQPGAEWIINPGEPIRFKSSNLTV 165

[Close]
BLAST of Lag0015974 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.6e-21
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 0 

Query: 66  WGHFVSHPEPGVASIVREFYANMEESSS-SFVRRHIVPFDSQTINRFYSLPNIERDEYNT 125
           W  FV  PEP V SIVREFYANM E SS SFVR   V FD  TINR+Y LPN ERDEY  
Sbjct: 5   WSDFVKQPEPAVVSIVREFYANMVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAI 64

Query: 126 YLLGYLDVNEVIQMVCRPGAEWVLTGAKVVRFRTIDLFV 164
           Y   ++DV+++I+ +C+PGAEW++   + +RF++ +L V
Sbjct: 65  YASEHVDVHQIIRELCQPGAEWIINPGEPIRFKSSNLTV 103

[Close]
BLAST of Lag0015974 vs. NCBI nr
Match: PIN01433.1 (hypothetical protein CDL12_26059 [Handroanthus impetiginosus])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-17
Identity = 58/160 (36.25%), Postives = 86/160 (53.75%), Query Frame = 0 

Query: 2   NKRSRRNTVASSSSAPFDPNRFISSKAVERFERYVESKSFIPERGFSPDPEV-QPNLVNN 61
           NKR+R++     SS   D  RF+S  A ER+   +  K  I ERGF    E    ++ + 
Sbjct: 5   NKRARKD-----SSDSRDKGRFVSKSAEERYHSGLVGKVAIAERGFETKGEAYYEHIYHT 64

Query: 62  IVAQDWGHFVSHPEPGVASIVREFYANMEESSS--SFVRRHIVPFDSQTINRFYSLPNIE 121
           +  + W  F++ PE GV  +VREFYAN  E  +    VR   VPFDS TIN  Y++P IE
Sbjct: 65  VRERKWKTFIASPESGVLPLVREFYANAAEHKNLKCLVRGREVPFDSVTINELYNIPPIE 124

Query: 122 RDEYNTYLLGYLDVNEVIQMVCRPGAEWVLTGAKVVRFRT 159
            D +  +    +D  E+ + +C  GA+W +T  + V F++
Sbjct: 125 LDAFENFCENGIDYEELTRTLCPHGAQWKMTKGEYVSFKS 159

[Close]
BLAST of Lag0015974 vs. NCBI nr
Match: PON97548.1 (hypothetical protein TorRG33x02_067500 [Trema orientale])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-17
Identity = 62/161 (38.51%), Postives = 83/161 (51.55%), Query Frame = 0 

Query: 3   KRSRRNTVASSSSAPFDPNRFISSKAVERFERYVESKSFIPERGFSPDPEVQPNLVNNIV 62
           KR    + +SSSS+ +   RF+S+KA +R+  +V  KS I E GF  DP  +   +  I 
Sbjct: 4   KRKTTFSTSSSSSSSYIKKRFVSAKAEKRYTTFVTVKSPIQEWGFE-DPGEEIEAI--IA 63

Query: 63  AQDWGHFVSHPEPGVASIVREFYANMEESS--SSFVRRHIVPFDSQTINRFYSLPNIERD 122
            + W  F   PEPG   I  EFY N +E +    FVR   V F   TINR+Y LP+I+ D
Sbjct: 64  TRKWQEFTKQPEPGTYEISAEFYVNAKEHNDFKVFVRDKWVSFHRSTINRYYKLPDIDND 123

Query: 123 EYNTYLLGYLDVNEVIQMVCRPGAEWVLTGAKVVRFRTIDL 162
           EY       +D  EVI  + RPG EW  +   V  F  + L
Sbjct: 124 EYCELQDQGVDPEEVIHYLARPGTEWNRSKTDVANFPAVGL 161

The following BLAST results are available for this feature:
BLAST of Lag0015974 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46897.12.2e-3448.17hypothetical protein Csa_020731 [Cucumis sativus][more]
KAA0033353.11.1e-3346.95putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]... [more]
XP_008458668.11.6e-2154.55PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo][more]
PIN01433.11.9e-1736.25hypothetical protein CDL12_26059 [Handroanthus impetiginosus][more]
PON97548.11.9e-1738.51hypothetical protein TorRG33x02_067500 [Trema orientale][more]
BLAST of Lag0015974 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015974.1Lag0015974.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005622 intracellular anatomical structure
cellular_component GO:0016020 membrane
molecular_function GO:0005488 binding
molecular_function GO:0016301 kinase activity