Lag0015936 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015936
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr12: 29520246 .. 29520758 (+)
RNA-Seq ExpressionLag0015936
SyntenyLag0015936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAAAGGAGAAAGATAAAAAGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTAACTCGACATTTGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGATGATCATGAAGACATCCCTAAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGGTGATGACAAGGCCAGAAGATTCACCTTCATTTACAATAGATGATTTATTGTCATTTCCTCAAGAAACCAAAGATACTATTGTTGAAACATTTAAAAGTTCTAACGTTTCAGACGTTCCAGACTTGCAAGAACACAAATGTGCCTCATGTTATATGTCCATTAGCTTTACAGATGAAGATTTGATGATGGGATTGAAGCCTCATTATAGGCCTTTATTCGTCTCAGGATATATTCGAGAGCAAAAAGTTCGCCTAAGTCAACCATGA

mRNA sequence

ATGTTTCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAAAGGAGAAAGATAAAAAGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTAACTCGACATTTGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGATGATCATGAAGACATCCCTAAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGGTGATGACAAGGCCAGAAGATTCACCTTCATTTACAATAGATGATTTATTGTCATTTCCTCAAGAAACCAAAGATACTATTGTTGAAACATTTAAAAGTTCTAACGTTTCAGACGTTCCAGACTTGCAAGAACACAAATGTGCCTCATGTTATATGTCCATTAGCTTTACAGATGAAGATTTGATGATGGGATTGAAGCCTCATTATAGGCCTTTATTCGTCTCAGGATATATTCGAGAGCAAAAAGTTCGCCTAAGTCAACCATGA

Coding sequence (CDS)

ATGTTTCGAAACTACAGAAGAAAGAACATGTCACAAAAGCAAAGGAGAAAGATAAAAAGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCAAGATTTTGTTCTAACTCGACATTTGGTAACCCTTAAAGATTTCTTCCCAAAGAACTTTCTTAATGATGATCATGAAGACATCCCTAAGATAGTCGCATGTCATGCTGTCAATGCATTCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGGTGATGACAAGGCCAGAAGATTCACCTTCATTTACAATAGATGATTTATTGTCATTTCCTCAAGAAACCAAAGATACTATTGTTGAAACATTTAAAAGTTCTAACGTTTCAGACGTTCCAGACTTGCAAGAACACAAATGTGCCTCATGTTATATGTCCATTAGCTTTACAGATGAAGATTTGATGATGGGATTGAAGCCTCATTATAGGCCTTTATTCGTCTCAGGATATATTCGAGAGCAAAAAGTTCGCCTAAGTCAACCATGA

Protein sequence

MFRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQETKDTIVETFKSSNVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKVRLSQP
Homology
BLAST of Lag0015936 vs. NCBI nr
Match: KAA0032810.1 (uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa] >TYK30368.1 uncharacterized protein E5676_scaffold575G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 5.3e-28
Identity = 81/169 (47.93%), Postives = 106/169 (62.72%), Query Frame = 0

Query: 2   FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPK 61
           +RNYRR N +QK ++K K  RK KLV EE++DF  T+ LVTL DFFP  FL D  ++ P 
Sbjct: 163 YRNYRRGNKAQKNKKK-KKTRKLKLVHEEDKDFPRTQRLVTLADFFPTRFLGDHQDENPG 222

Query: 62  IVACHAVNAFEEGDSSSSPSQVMTRPE---DSPSFTIDDLLSFPQETKDTIVETFKSS-- 121
           ++ACHA+NA EE    S P + +   E   D   F +DDLLS PQETK  ++    +S  
Sbjct: 223 VIACHAINATEE---ESIPLRSLKEEEVSKDLSRFNVDDLLSLPQETKTILINALLNSAA 282

Query: 122 NVSDVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV 166
           + S  P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Sbjct: 283 SSSSAPTATYESTPYC-MSIDFSDEDLLLGSKLHNRPLYVSGYVREQRV 326

BLAST of Lag0015936 vs. NCBI nr
Match: KAA0035943.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30459.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.7e-26
Identity = 76/166 (45.78%), Postives = 101/166 (60.84%), Query Frame = 0

Query: 2   FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPK 61
           +RNYRR N +QK ++  K  RK K + EE++DF  T+ LVTL DFFP  FL D  ++ P 
Sbjct: 250 YRNYRRWNKAQKNKK--KKTRKLKFMHEEDKDFPRTQRLVTLADFFPTRFLGDHQDENPG 309

Query: 62  IVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQETKDTIVETFKSSNVSDV 121
           +VACHA+NA EE        +     +D   F +DDLLS PQETK  ++    +S  S +
Sbjct: 310 VVACHAINATEEESIPLRSLEEEEVSKDLSRFNVDDLLSLPQETKTILINALLNSAASSL 369

Query: 122 --PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV 166
             P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Sbjct: 370 SAPTATYESTPYC-MSIDFSDEDLLLGSKLHNRPLYVSGYVREQRV 412

BLAST of Lag0015936 vs. NCBI nr
Match: KAA0056780.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97603.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 3.8e-26
Identity = 75/166 (45.18%), Postives = 104/166 (62.65%), Query Frame = 0

Query: 2   FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPK 61
           +RNYRR N +QK ++K K  +K KL+ EE++DF  T+ LVTL +FFP  FL D  ++ P+
Sbjct: 127 YRNYRRGNKTQKNKKK-KKTQKLKLINEEDKDFPRTQRLVTLANFFPTRFLCDHQDENPE 186

Query: 62  IVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQETKDTIVETFKSS--NVS 121
           +VACHA++A EE        +     +D   F +DDLLS PQETK  ++    +S  + S
Sbjct: 187 VVACHAIDAIEEESIPLRSLEEEGVSKDLLRFNVDDLLSLPQETKTILINALLNSVASSS 246

Query: 122 DVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV 166
             P         C MSI F+DEDL++G K H RPL+VSGY+REQ+V
Sbjct: 247 SAPTATYESTPYC-MSIDFSDEDLLLGSKLHNRPLYVSGYVREQRV 290

BLAST of Lag0015936 vs. NCBI nr
Match: TYK15313.1 (uncharacterized protein E5676_scaffold1706G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 8.5e-26
Identity = 76/164 (46.34%), Postives = 101/164 (61.59%), Query Frame = 0

Query: 4   NYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPKIV 63
           NYRR N +QK ++K K  RK KL+ EE++DF+  + LVTL DFFP  FL D  ++ P +V
Sbjct: 162 NYRRGNKAQKNKKK-KKTRKLKLLHEEDKDFLRPQRLVTLADFFPTRFLCDHQDENPGVV 221

Query: 64  ACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQETKDTIVETFKSSNVSDV-- 123
           ACHA+NA EE        +     +D   F ++DLLS PQETK  ++  F +S  S +  
Sbjct: 222 ACHAINATEEESIPLRSLEEEGVSKDLLRFNVNDLLSLPQETKTILINAFLNSATSSLSA 281

Query: 124 PDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV 166
           P         C MSI F DEDL++G K H RPL+VSGY+REQ+V
Sbjct: 282 PTATYESTLYC-MSIDFLDEDLLLGSKLHNRPLYVSGYVREQRV 323

BLAST of Lag0015936 vs. NCBI nr
Match: KAA0039557.1 (uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK01742.1 uncharacterized protein E5676_scaffold775G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 0

Query: 2   FRNYRRKNMSQKQRRKIKSLRKPKLVVEENQDFVLTRHLVTLKDFFPKNFLNDDHEDIPK 61
           +RNYR+ N +QK ++K K  RK KL+ EE++DF  T+ LVTL DFFP  FL D  ++ P+
Sbjct: 151 YRNYRKGNKAQKNKKK-KKTRKLKLMHEEDKDFPQTQRLVTLADFFPTRFLGDHQDENPR 210

Query: 62  IVACHAVNAFEEGDSSSSPSQVMTRPEDSPSFTIDDLLSFPQETKDTIVETFKSSNV--S 121
           +V CHA+NA EE +      +     +D   F ++DLLS PQETK  ++    +S    S
Sbjct: 211 VVECHAINAIEEENIPLRSLEEEGVSKDLSRFNVNDLLSLPQETKIILINALLNSTASSS 270

Query: 122 DVPDLQEHKCASCYMSISFTDEDLMMGLKPHYRPLFVSGYIREQKV 166
             P         C MSI F+ EDL++G K H RPL+VSGY+REQ+V
Sbjct: 271 SAPTATYESTPYC-MSIDFSYEDLLLGSKLHNRPLYVSGYVREQRV 314

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032810.15.3e-2847.93uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa] >TYK3... [more]
KAA0035943.11.7e-2645.78ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30459.1 ty3-gyp... [more]
KAA0056780.13.8e-2645.18ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97603.1 ty3-gyp... [more]
TYK15313.18.5e-2646.34uncharacterized protein E5676_scaffold1706G00210 [Cucumis melo var. makuwa][more]
KAA0039557.11.1e-2544.58uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK0... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015936.1Lag0015936.1mRNA