Lag0015910 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015910
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr12: 28806365 .. 28806760 (+)
RNA-Seq ExpressionLag0015910
SyntenyLag0015910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATCTCACAGACTATCGACCCACTGTCCTCTGAGATAGAAAGGGTCGAGCGTGCAGTGCAAGTCTTCTTTTCAGCTCCTAAATATCCTCTGCCTCCCTACATTGTTAATCCCGAAGAAGGTAACTATGTGCCCCTACCTGAATTCATTTTCTTAGTTCCTTCTTTTTATGGCGATCCAGGAGCAGAAGCCTATTATCATGCGCTCGAATTCTACTCAAGTTGCTTCAAGAGGAAAACCCCAGAGACATATGTAGATCAATCTAAGTTGAAGGTGTTTCCATATTCACTACAAGGGGAAGCTAGAACGCGAATTTTCTCATTACCTTCAGGTTCGGAAAAACTTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAATAATATAG

mRNA sequence

ATGGATATCTCACAGACTATCGACCCACTGTCCTCTGAGATAGAAAGGGTCGAGCGTGCAGTGCAAGTCTTCTTTTCAGCTCCTAAATATCCTCTGCCTCCCTACATTGTTAATCCCGAAGAAGGTAACTATGTGCCCCTACCTGAATTCATTTTCTTAGTTCCTTCTTTTTATGGCGATCCAGGAGCAGAAGCCTATTATCATGCGCTCGAATTCTACTCAAGTTGCTTCAAGAGGAAAACCCCAGAGACATATGTAGATCAATCTAAGTTGAAGGTGTTTCCATATTCACTACAAGGGGAAGCTAGAACGCGAATTTTCTCATTACCTTCAGGTTCGGAAAAACTTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAATAATATAG

Coding sequence (CDS)

ATGGATATCTCACAGACTATCGACCCACTGTCCTCTGAGATAGAAAGGGTCGAGCGTGCAGTGCAAGTCTTCTTTTCAGCTCCTAAATATCCTCTGCCTCCCTACATTGTTAATCCCGAAGAAGGTAACTATGTGCCCCTACCTGAATTCATTTTCTTAGTTCCTTCTTTTTATGGCGATCCAGGAGCAGAAGCCTATTATCATGCGCTCGAATTCTACTCAAGTTGCTTCAAGAGGAAAACCCCAGAGACATATGTAGATCAATCTAAGTTGAAGGTGTTTCCATATTCACTACAAGGGGAAGCTAGAACGCGAATTTTCTCATTACCTTCAGGTTCGGAAAAACTTGATGTGGACTTTTCCTACCGCAAGCGCACGGGTCAAGTAATAATATAG

Protein sequence

MDISQTIDPLSSEIERVERAVQVFFSAPKYPLPPYIVNPEEGNYVPLPEFIFLVPSFYGDPGAEAYYHALEFYSSCFKRKTPETYVDQSKLKVFPYSLQGEARTRIFSLPSGSEKLDVDFSYRKRTGQVII
Homology
BLAST of Lag0015910 vs. NCBI nr
Match: KOM41186.1 (hypothetical protein LR48_Vigan04g138400 [Vigna angularis])

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 34/89 (38.20%), Postives = 44/89 (49.44%), Query Frame = 0

Query: 24  FFSAPKYPLPPYIVNPEEGNYVPLPEFIFLVPSFYGDPGAEAYYHALEFYSSCFKRKTPE 83
           F SA   P PP     ++ +YV     I L+P F+G  G   + H  +F+  C   K P 
Sbjct: 48  FESALWEPFPP---TKDDVHYVLNTRLIHLLPKFHGFAGECPHQHLEDFHIMCSSMKPPH 107

Query: 84  TYVDQSKLKVFPYSLQGEARTRIFSLPSG 113
              D   LK FP SLQG AR  ++ LPSG
Sbjct: 108 VQDDDMFLKAFPQSLQGVARDWLYCLPSG 133

BLAST of Lag0015910 vs. NCBI nr
Match: XP_027076958.1 (uncharacterized protein LOC113700697 [Coffea arabica])

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 51  IFLVPSFYGDPGAEAYYHALEFYSSCFKRKTPETYVDQSKLKVFPYSLQGEARTRIFSLP 110
           I L+PSF+G PG E Y H  EF   C   K P    +Q K++ FP+SL+  A+  ++ LP
Sbjct: 40  IHLLPSFHGLPGEEPYKHLQEFDVVCNSMKPPGITEEQIKMRAFPFSLKDSAKDWLYYLP 99

Query: 111 SGS 114
            GS
Sbjct: 100 PGS 102

BLAST of Lag0015910 vs. NCBI nr
Match: XP_027082154.1 (uncharacterized protein LOC113704451 [Coffea arabica])

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 51  IFLVPSFYGDPGAEAYYHALEFYSSCFKRKTPETYVDQSKLKVFPYSLQGEARTRIFSLP 110
           I L+PSF+G PG E Y H  EF   C   K P    +Q K++ FP+SL+  A+  ++ LP
Sbjct: 40  IHLLPSFHGLPGEEPYKHLQEFDVVCNSMKPPGITEEQIKMRAFPFSLKDSAKDWLYYLP 99

Query: 111 SGS 114
            GS
Sbjct: 100 PGS 102

BLAST of Lag0015910 vs. NCBI nr
Match: XP_012480878.1 (PREDICTED: uncharacterized protein LOC105795765 [Gossypium raimondii])

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04
Identity = 32/82 (39.02%), Postives = 43/82 (52.44%), Query Frame = 0

Query: 33  PPYIVNPEEGNYVPLPE-FIFLVPSFYGDPGAEAYYHALEFYSSCFKRKTPETYVDQSKL 92
           PP I  P     + L   F+ L+P F G PG + Y H  EF  SC   K      +Q KL
Sbjct: 54  PPSITYPTLDRPLKLNSGFLNLLPKFNGLPGEDPYRHINEFLISCSTMKPDGIEEEQIKL 113

Query: 93  KVFPYSLQGEARTRIFSLPSGS 114
           + FP+SLQG A+  ++ +P GS
Sbjct: 114 RAFPFSLQGLAKDWLYYMPPGS 135

BLAST of Lag0015910 vs. NCBI nr
Match: XP_027090491.1 (uncharacterized protein LOC113711532 [Coffea arabica])

HSP 1 Score: 55.5 bits (132), Expect = 4.1e-04
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 0

Query: 51  IFLVPSFYGDPGAEAYYHALEFYSSCFKRKTPETYVDQSKLKVFPYSLQGEARTRIFSLP 110
           I L+PSF+G PG E Y H  EF   C   K P    +Q K++ FP+SL+  A+  ++ LP
Sbjct: 40  IHLLPSFHGLPGEEPYKHLQEFDVVCNSMKPPGITEEQIKMRAFPFSLKDSAKDWLYYLP 99

Query: 111 SGS 114
            GS
Sbjct: 100 PGS 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KOM41186.11.9e-0438.20hypothetical protein LR48_Vigan04g138400 [Vigna angularis][more]
XP_027076958.14.1e-0442.86uncharacterized protein LOC113700697 [Coffea arabica][more]
XP_027082154.14.1e-0442.86uncharacterized protein LOC113704451 [Coffea arabica][more]
XP_012480878.14.1e-0439.02PREDICTED: uncharacterized protein LOC105795765 [Gossypium raimondii][more]
XP_027090491.14.1e-0442.86uncharacterized protein LOC113711532 [Coffea arabica][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015910.1Lag0015910.1mRNA