Lag0015906 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015906
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description2Fe-2S ferredoxin-like isoform X2
Locationchr12: 28647165 .. 28647900 (+)
RNA-Seq ExpressionLag0015906
SyntenyLag0015906
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTTTGTTGCAGCTGCCTCCTCCATCGTAAGTTGCGGCACAGTTGCCGTTCGTACAAGGATTTCACTCACCGCCGTCGACACATTGTAGATCTGTCGCCTCCGTTGCTGCCATATTTTAGATCTGTTCGCCTTGGGTTTTTGTGTGTCGTCTCAGATCGCCATGGGTTTTTGTGAGCCATCTCAGATTTGACCGTCACCTTCACACACACTGTTTCAGTGGGTACTCCTCCTCCTACACCGTGGGTTTTCATTTGGTTGCTGCTCCTTCGCCGTGGGTAGTCACCATTTGTGACTATACATATTGTGAGTTCATAATATGGTTTTGTTTTGTTTAAATCTTTTGAACCTAACAAATAAAATAAAATTAAAATTTAAAAAAAAAATCAAGACAGATCTGAAGCCAACACAGTATCGCTTTTTGGTGATTTGTAAGCTTTGTATTCTCCCTTAGCTTTATAAGCTTGAAGAGAATCTTCTTCCTCTTCTTAAATCAACTTCCTTTAATTTCTTGTAAAATTTTGTTACCACTTTGTTTGGCCTTCTATAAGTGTACTGACATCCCAAGTAAAAACATTATTCAAAAGCTTCTCCTCTGTGGTCTTGCATTTGAATTATTTTGTTGATTTGCAGGATATCTATCACATTTGTCCTCATGAATGGAGAAGAGCAACAAATTAGAGTTCCCATTGGAATGTCTATGTTAGAAGCTGCTCATCTAAATGATATATAA

mRNA sequence

ATGGATTTTTGTTGCAGCTGCCTCCTCCATCGTAAGTTGCGGCACAGTTGCCGTTCGTACAAGGATTTCACTCACCGCCGTCGACACATTGTAGATCTGTCGCCTCCGTTGCTGCCATATTTTAGATCTGTTCGCCTTGGGTTTTTGTGTGTCGTCTCAGATCGCCATGGGTTTTTGATATCTATCACATTTGTCCTCATGAATGGAGAAGAGCAACAAATTAGAGTTCCCATTGGAATGTCTATGTTAGAAGCTGCTCATCTAAATGATATATAA

Coding sequence (CDS)

ATGGATTTTTGTTGCAGCTGCCTCCTCCATCGTAAGTTGCGGCACAGTTGCCGTTCGTACAAGGATTTCACTCACCGCCGTCGACACATTGTAGATCTGTCGCCTCCGTTGCTGCCATATTTTAGATCTGTTCGCCTTGGGTTTTTGTGTGTCGTCTCAGATCGCCATGGGTTTTTGATATCTATCACATTTGTCCTCATGAATGGAGAAGAGCAACAAATTAGAGTTCCCATTGGAATGTCTATGTTAGAAGCTGCTCATCTAAATGATATATAA

Protein sequence

MDFCCSCLLHRKLRHSCRSYKDFTHRRRHIVDLSPPLLPYFRSVRLGFLCVVSDRHGFLISITFVLMNGEEQQIRVPIGMSMLEAAHLNDI
Homology
[Close]
BLAST of Lag0015906 vs. NCBI nr
Match: XP_038900026.1 (2Fe-2S ferredoxin-like [Benincasa hispida] >XP_038900027.1 2Fe-2S ferredoxin-like [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 60  ISITFVLMNGEEQQIRVPIGMSMLEAAHLNDI 92
           IS+TFVL +GEEQQIRVP+GMSMLEAAHLNDI
Sbjct: 80  ISVTFVLKDGEEQQIRVPVGMSMLEAAHLNDI 111

[Close]
BLAST of Lag0015906 vs. NCBI nr
Match: XP_038896767.1 (2Fe-2S ferredoxin-like [Benincasa hispida] >XP_038896768.1 2Fe-2S ferredoxin-like [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 60  ISITFVLMNGEEQQIRVPIGMSMLEAAHLNDI 92
           IS+TFVL +GEEQQIRVP+GMSMLEAAHLNDI
Sbjct: 80  ISVTFVLKDGEEQQIRVPVGMSMLEAAHLNDI 111

[Close]
BLAST of Lag0015906 vs. NCBI nr
Match: XP_022139381.1 (uncharacterized protein LOC111010328 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 60  ISITFVLMNGEEQQIRVPIGMSMLEAAHLNDI 92
           IS+TFVL +GEEQQIRVP GMSMLEAAHLNDI
Sbjct: 81  ISVTFVLKDGEEQQIRVPTGMSMLEAAHLNDI 112

[Close]
BLAST of Lag0015906 vs. NCBI nr
Match: KAG7037341.1 (Adrenodoxin-like protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 60  ISITFVLMNGEEQQIRVPIGMSMLEAAHLNDI 92
           IS+TFVL +GEEQQI VPIGMSMLEAAHLNDI
Sbjct: 115 ISVTFVLKDGEEQQISVPIGMSMLEAAHLNDI 146

[Close]
BLAST of Lag0015906 vs. NCBI nr
Match: XP_022981615.1 (uncharacterized protein LOC111480682 [Cucurbita maxima] >XP_022981616.1 uncharacterized protein LOC111480682 [Cucurbita maxima] >XP_022981617.1 uncharacterized protein LOC111480682 [Cucurbita maxima] >XP_023525520.1 uncharacterized protein LOC111789108 [Cucurbita pepo subsp. pepo] >XP_023525521.1 uncharacterized protein LOC111789108 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.2 bits (139), Expect = 4.4e-05
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 60  ISITFVLMNGEEQQIRVPIGMSMLEAAHLNDI 92
           IS+TFVL +GEEQQI VPIGMSMLEAAHLNDI
Sbjct: 79  ISVTFVLKDGEEQQISVPIGMSMLEAAHLNDI 110

[Close]
BLAST of Lag0015906 vs. ExPASy Swiss-Prot
Match: Q8S904 (Adrenodoxin-like protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MFDX2 PE=2 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.7e-04
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 60  ISITFVLMNGEEQQIRVPIGMSMLEAAHLNDI 92
           I++TFV  +GEE  I+VP+GM++LEAAH NDI
Sbjct: 81  INVTFVDKDGEEIHIKVPVGMNILEAAHENDI 112

The following BLAST results are available for this feature:
BLAST of Lag0015906 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900026.11.2e-0587.502Fe-2S ferredoxin-like [Benincasa hispida] >XP_038900027.1 2Fe-2S ferredoxin-lik... [more]
XP_038896767.11.2e-0587.502Fe-2S ferredoxin-like [Benincasa hispida] >XP_038896768.1 2Fe-2S ferredoxin-lik... [more]
XP_022139381.13.4e-0587.50uncharacterized protein LOC111010328 [Momordica charantia][more]
KAG7037341.14.4e-0587.50Adrenodoxin-like protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp... [more]
XP_022981615.14.4e-0587.50uncharacterized protein LOC111480682 [Cucurbita maxima] >XP_022981616.1 uncharac... [more]
BLAST of Lag0015906 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S9048.7e-0462.50Adrenodoxin-like protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MFD... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015906.1Lag0015906.1mRNA