Lag0015903 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015903
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Locationchr12: 28587863 .. 28588231 (-)
RNA-Seq ExpressionLag0015903
SyntenyLag0015903
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAACACTTAAACTTGTGGCCAACAAGGGAGTTCAATGGAAAGAATCACAGACGAAAGTGAAATCTCTAGTGCCAAGTGACCTAAAGCCAGAATCGGCAGTTTGGCTTCACTTCATAAAAAACCGTTTGATGCCAACCACCCACGACAACACGATTTCAGTGGATAGAGTGATGCTACTCTATTGTATCATGAAGGGGTTGGAGAACAACGTGGGAAGCATTATCAGGGATGAGATTTTAGCCTGTGTGAGAAAACGAGCAGACAAGCTTTTCTTTGGATCACTCATCACCCAGCTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCATCATTTCTTCAAGACCAACTATTGA

mRNA sequence

ATGAAAGAAACACTTAAACTTGTGGCCAACAAGGGAGTTCAATGGAAAGAATCACAGACGAAAGTGAAATCTCTAGTGCCAAGTGACCTAAAGCCAGAATCGGCAGTTTGGCTTCACTTCATAAAAAACCGTTTGATGCCAACCACCCACGACAACACGATTTCAGTGGATAGAGTGATGCTACTCTATTGTATCATGAAGGGGTTGGAGAACAACGTGGGAAGCATTATCAGGGATGAGATTTTAGCCTGTGTGAGAAAACGAGCAGACAAGCTTTTCTTTGGATCACTCATCACCCAGCTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCATCATTTCTTCAAGACCAACTATTGA

Coding sequence (CDS)

ATGAAAGAAACACTTAAACTTGTGGCCAACAAGGGAGTTCAATGGAAAGAATCACAGACGAAAGTGAAATCTCTAGTGCCAAGTGACCTAAAGCCAGAATCGGCAGTTTGGCTTCACTTCATAAAAAACCGTTTGATGCCAACCACCCACGACAACACGATTTCAGTGGATAGAGTGATGCTACTCTATTGTATCATGAAGGGGTTGGAGAACAACGTGGGAAGCATTATCAGGGATGAGATTTTAGCCTGTGTGAGAAAACGAGCAGACAAGCTTTTCTTTGGATCACTCATCACCCAGCTCTGCCAAAGGGTGAAGATCGTTCCGGGCAAGGACGAGGAGCATCATTTCTTCAAGACCAACTATTGA

Protein sequence

MKETLKLVANKGVQWKESQTKVKSLVPSDLKPESAVWLHFIKNRLMPTTHDNTISVDRVMLLYCIMKGLENNVGSIIRDEILACVRKRADKLFFGSLITQLCQRVKIVPGKDEEHHFFKTNY
Homology
[Close]
BLAST of Lag0015903 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-16
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKSLVPSDLKPESAVWLHFIKNRLMPTTHDNTISVDRVMLLYC 64
           L+ VA  G +W  S     + + S L P + VW HF+K+RL+PTTH   +S DR++LL+ 
Sbjct: 75  LETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHS 134

Query: 65  IMKGLENNVGSIIRDEILACVRKRADKLFFGSLITQLCQRVKIVPGKDEEHH 117
           ++ G   NVG +I  EI AC  ++   LFF SLIT+LC+    +  +++ H+
Sbjct: 135 MLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNEEKLHN 186

[Close]
BLAST of Lag0015903 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKSLVPSDLKPESAVWLHFIKNRLMPTTHDNTISVDRVMLLYC 64
           L+ VA  G +W  S     + + S L P + VW HF+K+RL+PTTH  T+S DR++LL+ 
Sbjct: 145 LETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHS 204

Query: 65  IMKGLENNVGSIIRDEILACVRKRADKLFFGSLITQLCQRVK 107
           ++ G   NVG +I  EI AC  ++   LFF SLIT+LC+  +
Sbjct: 205 MLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNAR 246

[Close]
BLAST of Lag0015903 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKSLVPSDLKPESAVWLHFIKNRLMPTTHDNTISVDRVMLLYC 64
           L+ VA  G +W  S     + + S L P + VW HF+K+RL+PTTH  T+S + V LLY 
Sbjct: 166 LETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYS 225

Query: 65  IMKGLENNVGSIIRDEILACVRKRADKLFFGSLITQLCQRVK 107
           ++ G   NVG +I  EI AC  +++  LFF SLIT +C+  +
Sbjct: 226 MLTGKSINVGRMIHREICACAARKSGALFFPSLITSMCRNTR 267

[Close]
BLAST of Lag0015903 vs. NCBI nr
Match: PON44141.1 (hypothetical protein PanWU01x14_268850 [Parasponia andersonii])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15
Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKSLVPSDLKPESAVWLHFIKNRLMPTTHDNTISVDRVMLLYC 64
           L+ VA  GV+W  S       + S L P + VW HF+K+ L+PTTH   +S +RV+LLY 
Sbjct: 93  LETVAIAGVEWNVSFQGAYIYLRSSLNPHAKVWYHFLKSHLLPTTHGKIVSKERVLLLYS 152

Query: 65  IMKGLENNVGSIIRDEILACVRKRADKLFFGSLITQLCQRVKIVPGKDEEHH 117
           ++ G   NVG +I  EI AC  +++  LFF SLIT++C+  +     +E+ H
Sbjct: 153 MLTGKSINVGRMIHREICACAARKSRALFFPSLITRMCRNARAPYLYEEKLH 204

[Close]
BLAST of Lag0015903 vs. NCBI nr
Match: PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKSLVPSDLKPESAVWLHFIKNRLMPTTHDNTISVDRVMLLYC 64
           L+ VA  G +W  S     + + S L P + VW HF+K+ L+PTTH  T+S DR++LL+ 
Sbjct: 136 LETVAVAGAEWNVSAQGAYTCIRSALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHS 195

Query: 65  IMKGLENNVGSIIRDEILACVRKRADKLFFGSLITQLCQRVK 107
           ++ G   NVG +I  EI AC  ++   LFF SLIT+LC+  +
Sbjct: 196 MLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNAR 237

The following BLAST results are available for this feature:
BLAST of Lag0015903 vs. NCBI nr
Match NameE-valueIdentityDescription
PON78020.14.4e-1639.29hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
PON46472.11.3e-1543.14hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON70375.14.8e-1542.16hypothetical protein PanWU01x14_080440 [Parasponia andersonii][more]
PON44141.14.8e-1540.18hypothetical protein PanWU01x14_268850 [Parasponia andersonii][more]
PON35554.14.8e-1542.16hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii][more]
BLAST of Lag0015903 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015903.1Lag0015903.1mRNA