Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTGAAGAATGAGGCATCCTCATCGTGTTCTGATTTGGAGCGAAAATGGTGGTCCAGACTGTGGAGATTAAATCGTCCATTGCAAATAAAGCATTTTGTCTGGAGATCATTTCATAAATGCATTCCAACTGCTATCAATTTGTGGCGTCACCATGTTTCAGTTGATGGGAATTGCTCGTTGTGTTACAAAGGGCCCGAATCTAAAAATCATGCTCTTTTTCACTGTTCTAGGGCAAGGGCAGTATGGATAGGAATGAATATCAGCGATGAGGTTGGTTGGAGTGTGGATATGGATATTAAAGACAAATTGTTACACCTCAGCACTATCACCACTATAAAGGTTTTTGAACAAATATGTGTTGTGGTCTAGGCTATTTGGAATGATCGTAATAACACTATACACAATCAACTGATTCCTCTAGTTGAGATAAGGTGTGAATGGATACATGGATATCTGTTTGAGTTCAAAAATGCAAATCAGCGGCAGAATCGCAAGGGTCATCCAGGTCAGGAAATCAGTCAGATGATTGCCCAAGGTGAGGAATATTTTATGCATGTTGATGCTGCTTGCGATTTGGCTAATCAGTGTTGTAGCATTGGTGTGGTGCTTCGAAATCGTTATGGGCAGTTGCTGTTAGCATCGCATCAGGGGTCAACAATGTTCAGTAGTTCGTGTGTACTGAGGTGTTAG
mRNA sequence
ATGCTTTTGAAGAATGAGGCATCCTCATCGTGTTCTGATTTGGAGCGAAAATGGTGGTCCAGACTGTGGAGATTAAATCGTCCATTGCAAATAAAGCATTTTGTCTGGAGATCATTTCATAAATGCATTCCAACTGCTATCAATTTGTGGCGTCACCATGTTTCAGTTGATGGGAATTGCTCGTTGTGTTACAAAGGGCCCGAATCTAAAAATCATGCTCTTTTTCACTGTTCTAGGGCAAGGGCAGTATGGATAGGAATGAATATCAGCGATGAGGCTATTTGGAATGATCGTAATAACACTATACACAATCAACTGATTCCTCTAGTTGAGATAAGGTGTGAATGGATACATGGATATCTGTTTGAGTTCAAAAATGCAAATCAGCGGCAGAATCGCAAGGGTCATCCAGGTCAGGAAATCAGTCAGATGATTGCCCAAGGTGAGGAATATTTTATGCATGTTGATGCTGCTTGCGATTTGGCTAATCAGTGTTGTAGCATTGGTGTGGTGCTTCGAAATCGTTATGGGCAGTTGCTGTTAGCATCGCATCAGGGGTCAACAATGTTCAGTAGTTCGTGTGTACTGAGGTGTTAG
Coding sequence (CDS)
ATGCTTTTGAAGAATGAGGCATCCTCATCGTGTTCTGATTTGGAGCGAAAATGGTGGTCCAGACTGTGGAGATTAAATCGTCCATTGCAAATAAAGCATTTTGTCTGGAGATCATTTCATAAATGCATTCCAACTGCTATCAATTTGTGGCGTCACCATGTTTCAGTTGATGGGAATTGCTCGTTGTGTTACAAAGGGCCCGAATCTAAAAATCATGCTCTTTTTCACTGTTCTAGGGCAAGGGCAGTATGGATAGGAATGAATATCAGCGATGAGGCTATTTGGAATGATCGTAATAACACTATACACAATCAACTGATTCCTCTAGTTGAGATAAGGTGTGAATGGATACATGGATATCTGTTTGAGTTCAAAAATGCAAATCAGCGGCAGAATCGCAAGGGTCATCCAGGTCAGGAAATCAGTCAGATGATTGCCCAAGGTGAGGAATATTTTATGCATGTTGATGCTGCTTGCGATTTGGCTAATCAGTGTTGTAGCATTGGTGTGGTGCTTCGAAATCGTTATGGGCAGTTGCTGTTAGCATCGCATCAGGGGTCAACAATGTTCAGTAGTTCGTGTGTACTGAGGTGTTAG
Protein sequence
MLLKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKNHALFHCSRARAVWIGMNISDEAIWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRKGHPGQEISQMIAQGEEYFMHVDAACDLANQCCSIGVVLRNRYGQLLLASHQGSTMFSSSCVLRC
Homology
BLAST of Lag0015873 vs. NCBI nr
Match:
XP_030477990.1 (uncharacterized protein LOC115695032 [Cannabis sativa])
HSP 1 Score: 98.6 bits (244), Expect = 6.4e-17
Identity = 57/189 (30.16%), Postives = 88/189 (46.56%), Query Frame = 0
Query: 2 LLKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCS 61
LL ++ +S S WW W+L P ++K F W++ H +P A L++ +CS
Sbjct: 648 LLADDTFASVSSPHVSWWKSFWQLKLPPKVKIFAWKAIHNALPVASELFKRKSLTFASCS 707
Query: 62 LCYKGPESKNHALFHCSRARAVW--IGMNISDEA-IWNDRNNTIHNQLIPLVEIRCEWIH 121
LC ES HA+F C AR VW +G + ++ A IW+DRNN IH +L + H
Sbjct: 708 LCLNAWESVGHAMFSCKHARHVWKVVGFSFNNRASIWSDRNNIIHGKLPQQPLVIYAKAH 767
Query: 122 GYLFEFKNANQRQNRKG-----HPGQEISQMIAQGEEYFMHVDAACDLANQCCSIGVVLR 181
+L ++ A Q G P + ++VD A D A G ++R
Sbjct: 768 TFLNNYQAAQQLSLHAGLAPADTPNTSKTWTPPPPTLLKLNVDTAFDEARNRIGFGAIIR 827
Query: 182 NRYGQLLLA 183
+ G++L A
Sbjct: 828 DSTGKVLAA 836
BLAST of Lag0015873 vs. NCBI nr
Match:
XP_030483481.1 (uncharacterized protein LOC115700065 [Cannabis sativa])
HSP 1 Score: 97.1 bits (240), Expect = 1.9e-16
Identity = 63/222 (28.38%), Postives = 90/222 (40.54%), Query Frame = 0
Query: 3 LKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSL 62
L++ SS S+ WW W+L P +IK F WR FH +P A +L R H+ D CS+
Sbjct: 982 LEDSDLSSTSNSSTNWWKYFWKLQLPQKIKIFAWRVFHDALPVATSLVRRHIITDSTCSV 1041
Query: 63 CYKGPESKNHALFHCSRARAVW------------IGMNISDE------------------ 122
C + ES HALF C A+AVW + MN D
Sbjct: 1042 CRQAWESIGHALFGCKYAKAVWRATGFHFDWNAAVQMNKGDYLVYLSTIHSKLEMESIIC 1101
Query: 123 ---AIWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQR---------QNRKGHPGQE 182
+IW +RN IH + + + YL + +A + QN P +
Sbjct: 1102 ILWSIWTERNRIIHGKKAKSTVLLASFATNYLSNYHHAQAKYRPPEATANQNPPPAPVPD 1161
BLAST of Lag0015873 vs. NCBI nr
Match:
XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])
HSP 1 Score: 97.1 bits (240), Expect = 1.9e-16
Identity = 60/226 (26.55%), Postives = 93/226 (41.15%), Query Frame = 0
Query: 3 LKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSL 62
L + S+CS+ WWS W+L P +++ FVW+ FH +P A L+R H++ C++
Sbjct: 1036 LAEQDDSTCSNSIEHWWSNFWKLKLPPKVRIFVWKVFHTSLPVAAELYRRHIAFSPYCTI 1095
Query: 63 CYKGPESKNHALFHCSRARAVWIGMNISDE------------------------------ 122
C E+ +HALF C RA+AVW N S +
Sbjct: 1096 CNSCEETVHHALFSCPRAKAVWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELELFLV 1155
Query: 123 ---AIWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNR------KGHPGQEISQ 182
+IW++RN H + + YL EF+ A + + P + S+
Sbjct: 1156 LCWSIWHERNAIYHGNSVRTPAAVAAYAPSYLTEFQQARAKNAKPVTASGAATPSRPSSE 1215
BLAST of Lag0015873 vs. NCBI nr
Match:
XP_030505962.1 (uncharacterized protein LOC115720894 [Cannabis sativa])
HSP 1 Score: 95.5 bits (236), Expect = 5.4e-16
Identity = 65/222 (29.28%), Postives = 92/222 (41.44%), Query Frame = 0
Query: 12 SDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKN 71
S + WW W L P ++K FVW++FH+ IPTA +L + CSLC ES
Sbjct: 845 STSQHSWWKYFWNLKLPSKVKIFVWKAFHRAIPTAASLCNMKIIDSAACSLCSNAWESIK 904
Query: 72 HALFHCSRARAVW------------IGMNISDEAI---------------------WNDR 131
HAL C A+ VW M SD + W DR
Sbjct: 905 HALLLCKHAKKVWHSAGYSLDYDMLARMKFSDCLVLLSTLKTTSEMEQMFCTMWFLWTDR 964
Query: 132 NNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRKGHPGQEISQMIAQG---------- 189
NN IH + P++ W K+A N + H + S MI+ G
Sbjct: 965 NNYIHGK--PVLSPSQIWA-------KSAAYYCNFQHHSTIQNSPMISTGAATQSKWIRP 1024
BLAST of Lag0015873 vs. NCBI nr
Match:
XP_030509188.1 (uncharacterized protein LOC115723863 [Cannabis sativa])
HSP 1 Score: 94.0 bits (232), Expect = 1.6e-15
Identity = 58/212 (27.36%), Postives = 90/212 (42.45%), Query Frame = 0
Query: 18 WWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKNHALFHC 77
WWS W++ P +++ FVW+ FH +P A L+R H++ +CS+C ES NHALF C
Sbjct: 1010 WWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHIATSPHCSICNSAEESINHALFDC 1069
Query: 78 SRARAVW-------------------------IGMNISDEAI--------WNDRNNTIHN 137
RA+AVW ++ S+ + W++RN H
Sbjct: 1070 PRAKAVWELSSLHIDFHTLRQSASADILLHLSTALSTSEFELFLVLCWCNWHERNAIYHG 1129
Query: 138 QLIPLVEIRCEWIHGYLFEFKNANQRQNR---------KGHPGQEISQ-----MIAQGEE 183
+ + + YL EF+NA ++++ P E + QG
Sbjct: 1130 NTVRSSQAVASYAPSYLAEFQNARAKRSQPTPISIAATDPRPSSEFTHAPKWTAPPQG-R 1189
BLAST of Lag0015873 vs. ExPASy TrEMBL
Match:
A0A803P119 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 63/215 (29.30%), Postives = 94/215 (43.72%), Query Frame = 0
Query: 3 LKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSL 62
++++ S S S+L KWWS W LN P ++K F WR H +P A NL++ H++ D CS
Sbjct: 1559 IRDQESPSSSNLNTKWWSHFWHLNLPCKVKIFAWRVIHNVLPLAANLFKRHIAPDPKCSR 1618
Query: 63 CYKGPESKNHALFHCSRARAVW----------IGMNISDEA------------------- 122
C ES NHA F C +A+ VW + SD
Sbjct: 1619 CNYHNESLNHAFFLCKKAKQVWRLLPFQVDLAAATSSSDGEFVHSLFHFYDNFQMEIILC 1678
Query: 123 ----IWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRK--GHPGQEISQMIAQ 182
+W+DRNN++ + L I + +L EF + RQ P S
Sbjct: 1679 IMWYLWHDRNNSLFGKQTNLPTIIVDNALHFLNEFHSHTSRQAPLPFAKPVMNKSWQPPP 1738
BLAST of Lag0015873 vs. ExPASy TrEMBL
Match:
A0A803QC00 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 57/189 (30.16%), Postives = 88/189 (46.56%), Query Frame = 0
Query: 2 LLKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCS 61
LL ++ +S S WW W+L P ++K F W++ H +P A L++ +CS
Sbjct: 444 LLADDTFASVSSPHVSWWKSFWQLKLPPKVKIFAWKAIHNALPVASELFKRKSLTFASCS 503
Query: 62 LCYKGPESKNHALFHCSRARAVW--IGMNISDEA-IWNDRNNTIHNQLIPLVEIRCEWIH 121
LC ES HA+F C AR VW +G + ++ A IW+DRNN IH +L + H
Sbjct: 504 LCLNAWESVGHAMFSCKHARHVWKVVGFSFNNRASIWSDRNNIIHGKLPQQPLVIYAKAH 563
Query: 122 GYLFEFKNANQRQNRKG-----HPGQEISQMIAQGEEYFMHVDAACDLANQCCSIGVVLR 181
+L ++ A Q G P + ++VD A D A G ++R
Sbjct: 564 TFLNNYQAAQQLSLHAGLAPADTPNTSKTWTPPPPTLLKLNVDTAFDEARNRIGFGAIIR 623
Query: 182 NRYGQLLLA 183
+ G++L A
Sbjct: 624 DSTGKVLAA 632
BLAST of Lag0015873 vs. ExPASy TrEMBL
Match:
A0A803NI87 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 65/222 (29.28%), Postives = 92/222 (41.44%), Query Frame = 0
Query: 12 SDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKN 71
S + WW W L P ++K FVW++FH+ IPTA +L + CSLC ES
Sbjct: 706 STSQHSWWKYFWNLKLPSKVKIFVWKAFHRAIPTAASLCNMKIIDSAACSLCSNAWESIK 765
Query: 72 HALFHCSRARAVW------------IGMNISDEAI---------------------WNDR 131
HAL C A+ VW M SD + W DR
Sbjct: 766 HALLLCKHAKKVWHSAGYSLDYDMLARMKFSDCLVLLSTLKTTSEMEQMFCTMWFLWTDR 825
Query: 132 NNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRKGHPGQEISQMIAQG---------- 189
NN IH + P++ W K+A N + H + S MI+ G
Sbjct: 826 NNYIHGK--PVLSPSQIWA-------KSAAYYCNFQHHSTIQNSPMISTGAATQSKWIRP 885
BLAST of Lag0015873 vs. ExPASy TrEMBL
Match:
A0A803QH76 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 64/223 (28.70%), Postives = 88/223 (39.46%), Query Frame = 0
Query: 3 LKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSL 62
L + S S RKWW+RLW L P ++K F WR + +PTA+NL ++ C+L
Sbjct: 1357 LDSRDDHSSSSTNRKWWNRLWSLQLPKKVKIFAWRLVNDALPTAVNLAHRKIASSAACAL 1416
Query: 63 CYKGPESKNHALFHCSRARAVW---------------IGMNISDE--------------- 122
C ES HALF C RA+ VW G +I
Sbjct: 1417 CKCSWESVGHALFRCHRAKLVWDKFHFNVFIPNIANIKGFDIYSHLAAAHNDNDLEIITC 1476
Query: 123 ---AIWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRKG-------------- 178
IW++RN IH I C + YL ++K A +Q
Sbjct: 1477 LLWCIWSERNKEIHGTKPKPAPILCSFAANYLTQYKMAATQQKCASGLSSTSCNASVPVD 1536
BLAST of Lag0015873 vs. ExPASy TrEMBL
Match:
A0A803Q2K8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16
Identity = 58/212 (27.36%), Postives = 90/212 (42.45%), Query Frame = 0
Query: 18 WWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKNHALFHC 77
WWS W++ P +++ FVW+ FH +P A L+R H++ +CS+C ES NHALF C
Sbjct: 1409 WWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHIATSPHCSICNSAEESINHALFDC 1468
Query: 78 SRARAVW-------------------------IGMNISDEAI--------WNDRNNTIHN 137
RA+AVW ++ S+ + W++RN H
Sbjct: 1469 PRAKAVWELSSLHIDFHTLRQSASADILLHLSTALSTSEFELFLVLCWCNWHERNAIYHG 1528
Query: 138 QLIPLVEIRCEWIHGYLFEFKNANQRQNR---------KGHPGQEISQ-----MIAQGEE 183
+ + + YL EF+NA ++++ P E + QG
Sbjct: 1529 NTVRSSQAVASYAPSYLAEFQNARAKRSQPTPISIAATDPRPSSEFTHAPKWTAPPQG-R 1588
BLAST of Lag0015873 vs. TAIR 10
Match:
AT3G09510.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 29/88 (32.95%), Postives = 46/88 (52.27%), Query Frame = 0
Query: 20 SRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKNHALFHCSR 79
+R+W L ++KHF+WR+ + + T L + +D +C C++ ES NHALF C
Sbjct: 160 TRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPF 219
Query: 80 ARAVWIGMNISDEAIWNDRNNTIHNQLI 108
A W +SD ++ I NQL+
Sbjct: 220 ATMAW---RLSDSSL-------IRNQLM 237
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A803P119 | 2.4e-17 | 29.30 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QC00 | 3.1e-17 | 30.16 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803NI87 | 2.6e-16 | 29.28 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QH76 | 5.9e-16 | 28.70 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q2K8 | 7.7e-16 | 27.36 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G09510.1 | 2.0e-08 | 32.95 | Ribonuclease H-like superfamily protein | [more] |