Lag0015873 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015873
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H-like superfamily protein
Locationchr12: 27656575 .. 27657270 (+)
RNA-Seq ExpressionLag0015873
SyntenyLag0015873
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTGAAGAATGAGGCATCCTCATCGTGTTCTGATTTGGAGCGAAAATGGTGGTCCAGACTGTGGAGATTAAATCGTCCATTGCAAATAAAGCATTTTGTCTGGAGATCATTTCATAAATGCATTCCAACTGCTATCAATTTGTGGCGTCACCATGTTTCAGTTGATGGGAATTGCTCGTTGTGTTACAAAGGGCCCGAATCTAAAAATCATGCTCTTTTTCACTGTTCTAGGGCAAGGGCAGTATGGATAGGAATGAATATCAGCGATGAGGTTGGTTGGAGTGTGGATATGGATATTAAAGACAAATTGTTACACCTCAGCACTATCACCACTATAAAGGTTTTTGAACAAATATGTGTTGTGGTCTAGGCTATTTGGAATGATCGTAATAACACTATACACAATCAACTGATTCCTCTAGTTGAGATAAGGTGTGAATGGATACATGGATATCTGTTTGAGTTCAAAAATGCAAATCAGCGGCAGAATCGCAAGGGTCATCCAGGTCAGGAAATCAGTCAGATGATTGCCCAAGGTGAGGAATATTTTATGCATGTTGATGCTGCTTGCGATTTGGCTAATCAGTGTTGTAGCATTGGTGTGGTGCTTCGAAATCGTTATGGGCAGTTGCTGTTAGCATCGCATCAGGGGTCAACAATGTTCAGTAGTTCGTGTGTACTGAGGTGTTAG

mRNA sequence

ATGCTTTTGAAGAATGAGGCATCCTCATCGTGTTCTGATTTGGAGCGAAAATGGTGGTCCAGACTGTGGAGATTAAATCGTCCATTGCAAATAAAGCATTTTGTCTGGAGATCATTTCATAAATGCATTCCAACTGCTATCAATTTGTGGCGTCACCATGTTTCAGTTGATGGGAATTGCTCGTTGTGTTACAAAGGGCCCGAATCTAAAAATCATGCTCTTTTTCACTGTTCTAGGGCAAGGGCAGTATGGATAGGAATGAATATCAGCGATGAGGCTATTTGGAATGATCGTAATAACACTATACACAATCAACTGATTCCTCTAGTTGAGATAAGGTGTGAATGGATACATGGATATCTGTTTGAGTTCAAAAATGCAAATCAGCGGCAGAATCGCAAGGGTCATCCAGGTCAGGAAATCAGTCAGATGATTGCCCAAGGTGAGGAATATTTTATGCATGTTGATGCTGCTTGCGATTTGGCTAATCAGTGTTGTAGCATTGGTGTGGTGCTTCGAAATCGTTATGGGCAGTTGCTGTTAGCATCGCATCAGGGGTCAACAATGTTCAGTAGTTCGTGTGTACTGAGGTGTTAG

Coding sequence (CDS)

ATGCTTTTGAAGAATGAGGCATCCTCATCGTGTTCTGATTTGGAGCGAAAATGGTGGTCCAGACTGTGGAGATTAAATCGTCCATTGCAAATAAAGCATTTTGTCTGGAGATCATTTCATAAATGCATTCCAACTGCTATCAATTTGTGGCGTCACCATGTTTCAGTTGATGGGAATTGCTCGTTGTGTTACAAAGGGCCCGAATCTAAAAATCATGCTCTTTTTCACTGTTCTAGGGCAAGGGCAGTATGGATAGGAATGAATATCAGCGATGAGGCTATTTGGAATGATCGTAATAACACTATACACAATCAACTGATTCCTCTAGTTGAGATAAGGTGTGAATGGATACATGGATATCTGTTTGAGTTCAAAAATGCAAATCAGCGGCAGAATCGCAAGGGTCATCCAGGTCAGGAAATCAGTCAGATGATTGCCCAAGGTGAGGAATATTTTATGCATGTTGATGCTGCTTGCGATTTGGCTAATCAGTGTTGTAGCATTGGTGTGGTGCTTCGAAATCGTTATGGGCAGTTGCTGTTAGCATCGCATCAGGGGTCAACAATGTTCAGTAGTTCGTGTGTACTGAGGTGTTAG

Protein sequence

MLLKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKNHALFHCSRARAVWIGMNISDEAIWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRKGHPGQEISQMIAQGEEYFMHVDAACDLANQCCSIGVVLRNRYGQLLLASHQGSTMFSSSCVLRC
Homology
BLAST of Lag0015873 vs. NCBI nr
Match: XP_030477990.1 (uncharacterized protein LOC115695032 [Cannabis sativa])

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-17
Identity = 57/189 (30.16%), Postives = 88/189 (46.56%), Query Frame = 0

Query: 2   LLKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCS 61
           LL ++  +S S     WW   W+L  P ++K F W++ H  +P A  L++       +CS
Sbjct: 648 LLADDTFASVSSPHVSWWKSFWQLKLPPKVKIFAWKAIHNALPVASELFKRKSLTFASCS 707

Query: 62  LCYKGPESKNHALFHCSRARAVW--IGMNISDEA-IWNDRNNTIHNQLIPLVEIRCEWIH 121
           LC    ES  HA+F C  AR VW  +G + ++ A IW+DRNN IH +L     +     H
Sbjct: 708 LCLNAWESVGHAMFSCKHARHVWKVVGFSFNNRASIWSDRNNIIHGKLPQQPLVIYAKAH 767

Query: 122 GYLFEFKNANQRQNRKG-----HPGQEISQMIAQGEEYFMHVDAACDLANQCCSIGVVLR 181
            +L  ++ A Q     G      P    +          ++VD A D A      G ++R
Sbjct: 768 TFLNNYQAAQQLSLHAGLAPADTPNTSKTWTPPPPTLLKLNVDTAFDEARNRIGFGAIIR 827

Query: 182 NRYGQLLLA 183
           +  G++L A
Sbjct: 828 DSTGKVLAA 836

BLAST of Lag0015873 vs. NCBI nr
Match: XP_030483481.1 (uncharacterized protein LOC115700065 [Cannabis sativa])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-16
Identity = 63/222 (28.38%), Postives = 90/222 (40.54%), Query Frame = 0

Query: 3    LKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSL 62
            L++   SS S+    WW   W+L  P +IK F WR FH  +P A +L R H+  D  CS+
Sbjct: 982  LEDSDLSSTSNSSTNWWKYFWKLQLPQKIKIFAWRVFHDALPVATSLVRRHIITDSTCSV 1041

Query: 63   CYKGPESKNHALFHCSRARAVW------------IGMNISDE------------------ 122
            C +  ES  HALF C  A+AVW            + MN  D                   
Sbjct: 1042 CRQAWESIGHALFGCKYAKAVWRATGFHFDWNAAVQMNKGDYLVYLSTIHSKLEMESIIC 1101

Query: 123  ---AIWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQR---------QNRKGHPGQE 182
               +IW +RN  IH +      +   +   YL  + +A  +         QN    P  +
Sbjct: 1102 ILWSIWTERNRIIHGKKAKSTVLLASFATNYLSNYHHAQAKYRPPEATANQNPPPAPVPD 1161

BLAST of Lag0015873 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-16
Identity = 60/226 (26.55%), Postives = 93/226 (41.15%), Query Frame = 0

Query: 3    LKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSL 62
            L  +  S+CS+    WWS  W+L  P +++ FVW+ FH  +P A  L+R H++    C++
Sbjct: 1036 LAEQDDSTCSNSIEHWWSNFWKLKLPPKVRIFVWKVFHTSLPVAAELYRRHIAFSPYCTI 1095

Query: 63   CYKGPESKNHALFHCSRARAVWIGMNISDE------------------------------ 122
            C    E+ +HALF C RA+AVW   N S +                              
Sbjct: 1096 CNSCEETVHHALFSCPRAKAVWELSNFSIDFQTIERSSTADTLLLLSTSLSSSELELFLV 1155

Query: 123  ---AIWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNR------KGHPGQEISQ 182
               +IW++RN   H   +        +   YL EF+ A  +  +         P +  S+
Sbjct: 1156 LCWSIWHERNAIYHGNSVRTPAAVAAYAPSYLTEFQQARAKNAKPVTASGAATPSRPSSE 1215

BLAST of Lag0015873 vs. NCBI nr
Match: XP_030505962.1 (uncharacterized protein LOC115720894 [Cannabis sativa])

HSP 1 Score: 95.5 bits (236), Expect = 5.4e-16
Identity = 65/222 (29.28%), Postives = 92/222 (41.44%), Query Frame = 0

Query: 12   SDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKN 71
            S  +  WW   W L  P ++K FVW++FH+ IPTA +L    +     CSLC    ES  
Sbjct: 845  STSQHSWWKYFWNLKLPSKVKIFVWKAFHRAIPTAASLCNMKIIDSAACSLCSNAWESIK 904

Query: 72   HALFHCSRARAVW------------IGMNISDEAI---------------------WNDR 131
            HAL  C  A+ VW              M  SD  +                     W DR
Sbjct: 905  HALLLCKHAKKVWHSAGYSLDYDMLARMKFSDCLVLLSTLKTTSEMEQMFCTMWFLWTDR 964

Query: 132  NNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRKGHPGQEISQMIAQG---------- 189
            NN IH +  P++     W        K+A    N + H   + S MI+ G          
Sbjct: 965  NNYIHGK--PVLSPSQIWA-------KSAAYYCNFQHHSTIQNSPMISTGAATQSKWIRP 1024

BLAST of Lag0015873 vs. NCBI nr
Match: XP_030509188.1 (uncharacterized protein LOC115723863 [Cannabis sativa])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-15
Identity = 58/212 (27.36%), Postives = 90/212 (42.45%), Query Frame = 0

Query: 18   WWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKNHALFHC 77
            WWS  W++  P +++ FVW+ FH  +P A  L+R H++   +CS+C    ES NHALF C
Sbjct: 1010 WWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHIATSPHCSICNSAEESINHALFDC 1069

Query: 78   SRARAVW-------------------------IGMNISDEAI--------WNDRNNTIHN 137
             RA+AVW                           ++ S+  +        W++RN   H 
Sbjct: 1070 PRAKAVWELSSLHIDFHTLRQSASADILLHLSTALSTSEFELFLVLCWCNWHERNAIYHG 1129

Query: 138  QLIPLVEIRCEWIHGYLFEFKNANQRQNR---------KGHPGQEISQ-----MIAQGEE 183
              +   +    +   YL EF+NA  ++++            P  E +         QG  
Sbjct: 1130 NTVRSSQAVASYAPSYLAEFQNARAKRSQPTPISIAATDPRPSSEFTHAPKWTAPPQG-R 1189

BLAST of Lag0015873 vs. ExPASy TrEMBL
Match: A0A803P119 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 63/215 (29.30%), Postives = 94/215 (43.72%), Query Frame = 0

Query: 3    LKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSL 62
            ++++ S S S+L  KWWS  W LN P ++K F WR  H  +P A NL++ H++ D  CS 
Sbjct: 1559 IRDQESPSSSNLNTKWWSHFWHLNLPCKVKIFAWRVIHNVLPLAANLFKRHIAPDPKCSR 1618

Query: 63   CYKGPESKNHALFHCSRARAVW----------IGMNISDEA------------------- 122
            C    ES NHA F C +A+ VW             + SD                     
Sbjct: 1619 CNYHNESLNHAFFLCKKAKQVWRLLPFQVDLAAATSSSDGEFVHSLFHFYDNFQMEIILC 1678

Query: 123  ----IWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRK--GHPGQEISQMIAQ 182
                +W+DRNN++  +   L  I  +    +L EF +   RQ       P    S     
Sbjct: 1679 IMWYLWHDRNNSLFGKQTNLPTIIVDNALHFLNEFHSHTSRQAPLPFAKPVMNKSWQPPP 1738

BLAST of Lag0015873 vs. ExPASy TrEMBL
Match: A0A803QC00 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.1e-17
Identity = 57/189 (30.16%), Postives = 88/189 (46.56%), Query Frame = 0

Query: 2   LLKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCS 61
           LL ++  +S S     WW   W+L  P ++K F W++ H  +P A  L++       +CS
Sbjct: 444 LLADDTFASVSSPHVSWWKSFWQLKLPPKVKIFAWKAIHNALPVASELFKRKSLTFASCS 503

Query: 62  LCYKGPESKNHALFHCSRARAVW--IGMNISDEA-IWNDRNNTIHNQLIPLVEIRCEWIH 121
           LC    ES  HA+F C  AR VW  +G + ++ A IW+DRNN IH +L     +     H
Sbjct: 504 LCLNAWESVGHAMFSCKHARHVWKVVGFSFNNRASIWSDRNNIIHGKLPQQPLVIYAKAH 563

Query: 122 GYLFEFKNANQRQNRKG-----HPGQEISQMIAQGEEYFMHVDAACDLANQCCSIGVVLR 181
            +L  ++ A Q     G      P    +          ++VD A D A      G ++R
Sbjct: 564 TFLNNYQAAQQLSLHAGLAPADTPNTSKTWTPPPPTLLKLNVDTAFDEARNRIGFGAIIR 623

Query: 182 NRYGQLLLA 183
           +  G++L A
Sbjct: 624 DSTGKVLAA 632

BLAST of Lag0015873 vs. ExPASy TrEMBL
Match: A0A803NI87 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 65/222 (29.28%), Postives = 92/222 (41.44%), Query Frame = 0

Query: 12  SDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKN 71
           S  +  WW   W L  P ++K FVW++FH+ IPTA +L    +     CSLC    ES  
Sbjct: 706 STSQHSWWKYFWNLKLPSKVKIFVWKAFHRAIPTAASLCNMKIIDSAACSLCSNAWESIK 765

Query: 72  HALFHCSRARAVW------------IGMNISDEAI---------------------WNDR 131
           HAL  C  A+ VW              M  SD  +                     W DR
Sbjct: 766 HALLLCKHAKKVWHSAGYSLDYDMLARMKFSDCLVLLSTLKTTSEMEQMFCTMWFLWTDR 825

Query: 132 NNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRKGHPGQEISQMIAQG---------- 189
           NN IH +  P++     W        K+A    N + H   + S MI+ G          
Sbjct: 826 NNYIHGK--PVLSPSQIWA-------KSAAYYCNFQHHSTIQNSPMISTGAATQSKWIRP 885

BLAST of Lag0015873 vs. ExPASy TrEMBL
Match: A0A803QH76 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 64/223 (28.70%), Postives = 88/223 (39.46%), Query Frame = 0

Query: 3    LKNEASSSCSDLERKWWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSL 62
            L +    S S   RKWW+RLW L  P ++K F WR  +  +PTA+NL    ++    C+L
Sbjct: 1357 LDSRDDHSSSSTNRKWWNRLWSLQLPKKVKIFAWRLVNDALPTAVNLAHRKIASSAACAL 1416

Query: 63   CYKGPESKNHALFHCSRARAVW---------------IGMNISDE--------------- 122
            C    ES  HALF C RA+ VW                G +I                  
Sbjct: 1417 CKCSWESVGHALFRCHRAKLVWDKFHFNVFIPNIANIKGFDIYSHLAAAHNDNDLEIITC 1476

Query: 123  ---AIWNDRNNTIHNQLIPLVEIRCEWIHGYLFEFKNANQRQNRKG-------------- 178
                IW++RN  IH        I C +   YL ++K A  +Q                  
Sbjct: 1477 LLWCIWSERNKEIHGTKPKPAPILCSFAANYLTQYKMAATQQKCASGLSSTSCNASVPVD 1536

BLAST of Lag0015873 vs. ExPASy TrEMBL
Match: A0A803Q2K8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.7e-16
Identity = 58/212 (27.36%), Postives = 90/212 (42.45%), Query Frame = 0

Query: 18   WWSRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKNHALFHC 77
            WWS  W++  P +++ FVW+ FH  +P A  L+R H++   +CS+C    ES NHALF C
Sbjct: 1409 WWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHIATSPHCSICNSAEESINHALFDC 1468

Query: 78   SRARAVW-------------------------IGMNISDEAI--------WNDRNNTIHN 137
             RA+AVW                           ++ S+  +        W++RN   H 
Sbjct: 1469 PRAKAVWELSSLHIDFHTLRQSASADILLHLSTALSTSEFELFLVLCWCNWHERNAIYHG 1528

Query: 138  QLIPLVEIRCEWIHGYLFEFKNANQRQNR---------KGHPGQEISQ-----MIAQGEE 183
              +   +    +   YL EF+NA  ++++            P  E +         QG  
Sbjct: 1529 NTVRSSQAVASYAPSYLAEFQNARAKRSQPTPISIAATDPRPSSEFTHAPKWTAPPQG-R 1588

BLAST of Lag0015873 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-08
Identity = 29/88 (32.95%), Postives = 46/88 (52.27%), Query Frame = 0

Query: 20  SRLWRLNRPLQIKHFVWRSFHKCIPTAINLWRHHVSVDGNCSLCYKGPESKNHALFHCSR 79
           +R+W L    ++KHF+WR+  + + T   L    + +D +C  C++  ES NHALF C  
Sbjct: 160 TRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPF 219

Query: 80  ARAVWIGMNISDEAIWNDRNNTIHNQLI 108
           A   W    +SD ++       I NQL+
Sbjct: 220 ATMAW---RLSDSSL-------IRNQLM 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030477990.16.4e-1730.16uncharacterized protein LOC115695032 [Cannabis sativa][more]
XP_030483481.11.9e-1628.38uncharacterized protein LOC115700065 [Cannabis sativa][more]
XP_030508852.11.9e-1626.55uncharacterized protein LOC115723496 [Cannabis sativa][more]
XP_030505962.15.4e-1629.28uncharacterized protein LOC115720894 [Cannabis sativa][more]
XP_030509188.11.6e-1527.36uncharacterized protein LOC115723863 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803P1192.4e-1729.30Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QC003.1e-1730.16Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NI872.6e-1629.28Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QH765.9e-1628.70Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q2K87.7e-1627.36Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G09510.12.0e-0832.95Ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 15..84
e-value: 3.1E-15
score: 56.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015873.1Lag0015873.1mRNA