Lag0015862 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015862
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNase H domain-containing protein
Location	chr12: 27378620 .. 27385806 (+)
RNA-Seq Expression	Lag0015862
Synteny	Lag0015862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGAGAATCTTAAAGAGAAGGAGCTAGAGGATGCTATCCTAATCATGTGGGAGATATGGAATCACAGAAATAATGTTTTACACAACGCAACGAGCCCAGACCAGAATCTCATCATCAGATCAGTGGACACAAAAATTTCGGAGGGGGTAGCTTACCTCAATTTCGTCTCTGCCATGGATCGCCTAAGATTGAAGACCCAGCTGAGTCAAGTCCCTCAGACTCATCTGCCTCCTGATTCATGGAGGCTCAACACTGACGCCTCCCGTAACAATCAAATTAGCGTTGGGGGAGTGGGATGGACCTGCCATGACTCCTCAGGTTCTTCCATCTGCGAGGGATTCACAAGAATCAAGGGCAAATGGCCTATCAAGATGTTGGAGATGAAAGCGATTCTCGAAGGTTTGCGTAGCTTACCAACCATTCGGGCTTCGTGCGCTAATCTAGAAATCCCGCCAATAGTGGTGTTGTCTGATGCCATTGGCGTCATCAATCCGCTGAACAAATCTGAAGCAGACTTATCGAAAATCTCATTTCTTGTCGTCGAGATTGATCGCCTGATAGTTGAGGTCGAGAGAATCTCTTTCGTTCATTGCCCGCGTTCGCTGAATGTGGAAGCTCATAATCTCGCGCGCCATGCTGCCTTCAGTCTTTTCGAGGGCTTTAGTTGTTTTTTGGATACTTCTTCCAATTCGGAAGAAGGTTTAGTTTTGTTGGGTCATTTTGGGCCTGAATTTCTCTCCCCCAATTTTATCCGGCCTGTTGTGTAGTTCTTCCCTTTTAATGTTTTCCTTTTTAAAAAAAAAGGTTTTATGTCTTTTTGCTTACGTCATCATCGCAAAATTACCATTTTAATCTCTATATGAAAGCACACATTTTTTTTCTCATCTAGTTTCTCGCTTAATTTTTTCTTCTCCCTCCTCTCTTTTTATTTTCTCTCTCCAGAGAGCACACAACAAAAGCAAAGGCTAGAGTAGACAGAGGTTGAAGCTAGATTGGGGGAGGGTGGGATTGGAGAGAGAAATGAGAGAGAGAGCGAGATTGGAGAGAGAAATTGGAGATTGGGGAGAGAAATTGGAGAGAGAGTGAGAGGTTGGAGCAAGAGGAGAGTAGAATAGTAATTTTACTATAATACTGACGCAAGCAAAATAAGATATAATCTTAAATTGAAAAGAGTGGGTCATTTATCATTTCCGCCTATTTAAATGGGTCATCCGTATGAAAAAAAAAAAAACATTTAATTTGGTTAGGTATATCAATTTTTATCCTAAAATTTTCAATTTCATCCAATTCAATTTTGAGTTCCATAAATGTTGTTATGTTTACTTTTTTTTTTTTTTTTTTTTGAAAAAATGTTGTTATGTTTACTTTAAACTAAACATGTGTTGTACCTTTTGCATTATTATAATGTACTTTCAATTGGAAAATCGTTTTAATGAAATATTTTTGTGTGCTTAATGAGCTATAAAACAATATATTTGGTATGAAATTGGTGAGATTTTCAAATGACACAAGACCTTGATTTTTGTTGAAATATGTGTTTTGGAGATTTGTTCCATAGTTGGTTTTGCACATCAAACAAGCTTTGTGCAAGGCTTAAATTTTGTTGCAATTAGTTAATTTGGAGGGATTCTTAATTGCTTTTTTTTTTGTTATGTGTTAAAATTAGTAGGTTAATTTAGTAAAACTGAATCACACACTACAAAAAAAAAATTGCTTATTTCAACCATCTTTTATCAAAGGCCATAAATAAACATTTGAAAAAGATATATATTCATCAAAGTTATTTGAAAAATATCTACATTTTATCAAAGGTTAGTAAAAACATTTGAAAAGGATACATCTATATCTATAATCTATGATTCTATTTTCAATATAGATACTATATATAAAAGGGGCCAAGAGGGGAGAATTTTTACATTTCCTTATTGCCCTTAAAATTTTTTATAATGACTATTTTGCCCTTCTACTCTCATTAATTATATTTAGTTTAAGAGGAGAGAATTTTTACATTCCTTTATTGCCCTTAAAATTTTTTATAATGACTATTTTGCTCTTCTACCATATTAATTATATTTAATAGAAATATCATATTGCATCCGTAAATCACAACAAAATTCCTCAAAATTACATATTGCATGTGATTTTGAACCACTATTTTTGATATTGCTTGTGATTTTTAACCTCTTTTTTAAACCCCTCCATGTTTCTCCCTATACTTCAATGATAGCCACATAATTCGAATTTTTTTTTTTTTTTTTTGGGAATTGGACAAGACAGGATTAGCCGTTGGTGGAAAAATGGAAAATGGGGAGGAAAATAAAAGGAAGACAAAGACTATATAGGAGGTGGAGCCTATTGTTTCTATTTTTTTCTAGGAAGAAAAGGAAAATTTAGATCAGTTCCATTGACTGATTGCGATGGGATGCTACTGTTGTACTGGAGACCCTTATGGATTATTATGAATCTTTTTTCAATGGTATTTTATTTGATATTGAAGTCATTTCATTACGGGTGAAACTATATTTCTGTAATTTCTAAGATTGTGCCTCGAATAATGTAGTTGTTTTAAAATGATTTTTATAAAAAAAACTTTGTGAAGGAAAATCAATTAAAATTTTCCAGTTTTGAAACGAAAGAATTTACAGTAGTCATTATAACTTGTTGATGCCAAAATTTCGCCAAGCGACTCACAAGCGACTCACCTGACCGTCACGTGACATCAATGGTAAATTTGTTGAAGGGGAAAGACGTGCCCTGCAAAACAAGAGAAAACTATGCACCGGTGTGGTGCTTGCCACACCGACTCCGATGCTTAAGTCAGTTCGGAGAAGCAAGTAAAATAAAAGTATAGAGGGAGAAAAAAGATACCAAGTTGAGTCCCCCTACCTTGGGGTTAGGCTCTTCTATTTATAGTTGAAATTAGGGTTTTCCCTTCCTTTTAGGAGAGAGAATAGCCTTAGAGATTGATTCAGGCCTAATGGGCCTTCGTGAGCTTGTTTCTGCTCTGGGCTCTGGTCATTCTGACTTACTTAATTAGAGCTAGGTCCAAATTCACCCATAACATTAAGCCCCCACTCTTTGAAGTGGGATTCAGGGGTGGCCTGTTGCTATAAGTCAAACGCCTTAAGCCCAATTTAAGAGTAGAATTCTCACTTGTGTCGATTTGTGTGTTGATTTCCTCTTCACTTCACTTGGGCAGCTACATGAGTTCTCTTGAGTTCAAATATTCCAAGGCTAGCCTTAGATGCTTTATCATGAGGGTCTCCTTTTCATTTGGTTATGGTTGGCTTCAAACTTCTGATGATCAGCTTAAGCCCTTGGAGGGTTAGTCTCGGTTCTGTTTTCTAACCTCATCGGTCAACTCCTATTGCCTTTTGTTTAATATGGAGACATATCCCTTCTTGCTTTTTGTTTAATAGGGAGTGCATATCCCCTCTGCAGCCCCCAATCTCAAGTAAAGCTTCATTGAAACATAAAGTGTAGTTTGGTGAAGAGAAGAATACCTTTAGGGTTTGTGCTCAGACTCGGCAAGATGTGTCCAACCAGATGAGTTGAGATAACCTGTGGCCTTGAGGAGGTTGTGGAGATGCGTCAAATACTATGGAAAAATGTTGGGCCTTTGAGGGTGGAGCTCGGCCTTGGCCTCGGATGGTCGACCTCGGCCTTGGCATGAGGTCGACCAGCTCCTCTGCGTTGTTTGCTTGCTTGTTTTCCATCCCAAGGGTGCTTGCACTCAGTTGGGGACTTGGGGAGGTTGAGGGCATGTGTCAACCTCTCTTCAAGTGTCCATGTCCATTCTAGGGGTGCGTACACTCTTCTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCTTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGTCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGTCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGCGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGTCCTCTCTTCAAGCATCGTGGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTACGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCTGGTCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTAGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCTGGTCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGAGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGAATCTCATCCCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATCTCATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATTTCATCTCGATGGTACGTACACTCGATCGAGGGCTTTGAAGGACCCAACCTCTGCAAGGGTCAGTATACAAATATGTCTTTCACAAACGAGTGTATCATTAAGTTTCTAGCCAATCAAGCTATAATAAGAGCACATACTAAAAGAAAGTACTAGCTCAAGAATATTATTCTAGACATAAAAACAGAGTCAAGTAGCTTATGAGCAAAAATGTTAAACCTTTGGAGATGCGATAACATAAATACCTGGATCAAGTTCTTTATGGAACTGAGTATGGTTTTTATGACCACAAAGTGATGAGGCCAACTTTGACTGTTTTATTTAATTAGGGAAGCATATTCCCTGTGCAGCCCCCTACTCAAGCAAGGTTTTTCTCGAAGTAAAAGTTATGCTTGAGTAATCGATGTTGGCATACCTTAGCGTTTTCATGTCGCATAACTCTCCCTTATCGGCATTTGTGGGTGTCGACCTCCTATGGGTCTGTCTCAGCTCCTTGCATGTCGACTCTGTCATTGTCACCGAGACCTTCAACATCATCATTCTCGAGCGTTTGTCGACTCTGCTAAGGTCGTTCCATTAATCGAGTGCCTTGGAGAGTATAGGTTTTTTCACTCTTCCAGTGATATTTTGTTGACTCAGCTACTCAGGCTTTCAGGAGCTCCATTTTTCCTCCTCGTGAAATAACGTTAGTAGATAACATTATGTAGATATGAGGAAAAGACTAGTCATTGATAAAAATTATGAATAGTTTGCATTCAATAAATCAATTGATGCACATAAAGTAAAAAATGTATCAGAATCCGTAATTACGAATTGAGTAATAGACATATAGTAAATTAGGGTAGGTAGAGAACATACCCCAAAATGCTAAGCTTTATGAAATGGTAAAGGTCTTTGCTGGGCTAATATGGGCTATCTTCAGACCTCTTGAATTTCACACTCCATATTGTTGAACTCAGAATTAGAAATAAATAACAGACTTCATAATATTTGTAGTCAAACATTTATGAAGATGTCATAGAACAATTTTTGTTCAAGCAAACTTGATTTACAATAGTCTACTTTAATTTCAACTTTTGATTTATAATTTGCAATTTGATCCCTTTCGGTTTTACAGAAAGCTCATCCATTCTTTTACCTTCTGCTTGATGATTCCGTTCTCCAGAGGACTTGGAGCCAAATTAAAGTTCTGGAAACAGGCCCAATTCCAAAGATTTGAGTTGATATGCTGTTTTGGGCGGTTGGTAACCCTGCTCCAACTTATTTGGAGAGATGAACATATTTGATCAAATGTCTCATCACTCGCATTACAGGAACGTGGCATGGACTTCGATTCTTATTATAAAGAGCACTGGAAAATCAAAATATGCAGTCAAACAAAATTTTGTCAAATCCAACAAAGTGCAGAACAACCAAGTGCCAATTACTTGATGAATGATGATTCAATATCGCTTTACTAGCAACATTATACTTATCCCCAAATTGAAAATTTGGCGGAGATTTTCAGACTTCCACGTCAATTTTTGTGTCGTTTTCCTTGTGGGAGTGTGAGGGTTTGATTAATACAGAAAGCTGTATAGCGCAACTTACTTTTTTCACCTACGAAAGTTTGAAGATGACTTTTACAATTGAATGTTTAAGAACACAATTGTAGTACTAAGCACAAGCACATGGTGGTTTGTACAATTTACTCTAATCTTTGGATATAATTGTGAAATCCAGAGAGTGAACCTTTTTCATTTTAATTAAACCCAAACTTTCAAAGAATTCCATTAGAAGAAACCAATATAAACCAAATAATTCAATATTATCAATTGCGGTTACTTGGCATAAGCACGGGGTTTGATTTATTGTTTATTATTATCTTTTTCCTATTTTCCATGATGCATAGATTTGAAGTAGCAGTAAACTGTGAAGCAAACTTATCTAATCTCTTCAATTGAAGGACGAGTTGAATTAGGCAGTCTCCGATGACCAGAAGGCTGAGAGAGTCGTCGTCTTTTGGTGGATGGGCAAATCACTTTGACTCATTCGCCGTCGTCCATTCTCCGCCAACCACTTGAATCAAAAGCCAGCAGCAACGACCACTCATCGAAGTTTGAGCTCTGCAGGTTGATTTTGATAAATTTGTAGTCTTCCCCACAGACGGCGCCAACTGTTGATGCCAAAATTTGGCCAAGCGACTCACAAGCGACTCACCTGACCGTCACGTGACATCAATGGTAAATTTGTTGAAGGGGAAAGACGTGCCCTGCAAAACAAGAGAAAACTATGCACCGGTGTGGTGCTTGCCACACCGACTCCGATGCTTAAGTCAGTTCGGAGAAGCAAGTAAAATAAAAGTATAGAGGGAGAAAATAGATACCAAGTTGAGTCCCCCTACCTTGGGGTTAGGCTCTTCTATTTATAGTTGAAATTAGGGTTTTCCCTTCCTTTTAGGAGAGAGAATAGCCTTAGAGATTGATTCAGGCCTAATGGGCCTTCGTGAGCTTGTTTCTGCTCTGGGCTCTGGTCATTCGTAG

mRNA sequence

ATGATCGAGAATCTTAAAGAGAAGGAGCTAGAGGATGCTATCCTAATCATGTGGGAGATATGGAATCACAGAAATAATGTTTTACACAACGCAACGAGCCCAGACCAGAATCTCATCATCAGATCAGTGGACACAAAAATTTCGGAGGGGGTAGCTTACCTCAATTTCGTCTCTGCCATGGATCGCCTAAGATTGAAGACCCAGCTGAGTCAAGTCCCTCAGACTCATCTGCCTCCTGATTCATGGAGGCTCAACACTGACGCCTCCCGTAACAATCAAATTAGCGTTGGGGGAGTGGGATGGACCTGCCATGACTCCTCAGGTTCTTCCATCTGCGAGGGATTCACAAGAATCAAGGGCAAATGGCCTATCAAGATGTTGGAGATGAAAGCGATTCTCGAAGGTTTGCGTAGCTTACCAACCATTCGGGCTTCGTGCGCTAATCTAGAAATCCCGCCAATAGTGGTGTTGTCTGATGCCATTGGCGTCATCAATCCGCTGAACAAATCTGAAGCAGACTTATCGAAAATCTCATTTCTTGTCGTCGAGATTGATCGCCTGATAGTTGAGGTCGAGAGAATCTCTTTCGTTCATTGCCCGCGTTCGCTGAATGTGGAAGCTCATAATCTCGCGCGCCATGCTGCCTTCAGTCTTTTCGAGGGCTTTAGTTGTTTTTTGGATACTTCTTCCAATTCGGAAGAAGGGGAAAGACGTGCCCTGCAAAACAAGAGAAAACTATGCACCGGTGTGGTGCTTGCCACACCGACTCCGATGCTTAAGTCAGTTCGGAGAAGCAACTACATGAGTTCTCTTGAGTTCAAATATTCCAAGGCTAGCCTTAGATGCTTTATCATGAGGGTCTCCTTTTCATTTGGTTATGGTTGGCTTCAAACTTCTGATGATCAGCTTAAGCCCTTGGAGGGGTGCTTGCACTCAGTTGGGGACTTGGGGAGGTTGAGGGCATGTGTCAACCTCTCTTCAAGTGTCCATGTCCATTCTAGGGGTGCGTACACTCTTCTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCTTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGAAGTTCCCGGTCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGCGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGTCCTCTCTTCAAGCATCGTGGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGGGTGCGTACACTCTTCTAGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCTGGTCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGAATCTCATCCCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATCTCATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATTTCATCTCGATGCGTTTTCATGTCGCATAACTCTCCCTTATCGGCATTTGTGGGTGTCGACCTCCTATGGGTCTGTCTCAGCTCCTTGCATGTCGACTCTGTCATTGTCACCGAGACCTTCAACATCATCATTCTCGAGCGTTTGTCGACTCTGCTAAGAAAGCTCATCCATTCTTTTACCTTCTGCTTGATGATTCCGTTCTCCAGAGGACTTGGAGCCAAATTAAAGTTCTGGAAACAGGCCCAATTCCAAAGATTTGAGTTGATATGCTGTTTTGGGCGGTTGGGGAAAGACGTGCCCTGCAAAACAAGAGAAAACTATGCACCGGTGTGGTGCTTGCCACACCGACTCCGATGCTTAAGTCAGTTCGGAGAAGCAAGAGAGAGAATAGCCTTAGAGATTGATTCAGGCCTAATGGGCCTTCGTGAGCTTGTTTCTGCTCTGGGCTCTGGTCATTCGTAG

Coding sequence (CDS)

ATGATCGAGAATCTTAAAGAGAAGGAGCTAGAGGATGCTATCCTAATCATGTGGGAGATATGGAATCACAGAAATAATGTTTTACACAACGCAACGAGCCCAGACCAGAATCTCATCATCAGATCAGTGGACACAAAAATTTCGGAGGGGGTAGCTTACCTCAATTTCGTCTCTGCCATGGATCGCCTAAGATTGAAGACCCAGCTGAGTCAAGTCCCTCAGACTCATCTGCCTCCTGATTCATGGAGGCTCAACACTGACGCCTCCCGTAACAATCAAATTAGCGTTGGGGGAGTGGGATGGACCTGCCATGACTCCTCAGGTTCTTCCATCTGCGAGGGATTCACAAGAATCAAGGGCAAATGGCCTATCAAGATGTTGGAGATGAAAGCGATTCTCGAAGGTTTGCGTAGCTTACCAACCATTCGGGCTTCGTGCGCTAATCTAGAAATCCCGCCAATAGTGGTGTTGTCTGATGCCATTGGCGTCATCAATCCGCTGAACAAATCTGAAGCAGACTTATCGAAAATCTCATTTCTTGTCGTCGAGATTGATCGCCTGATAGTTGAGGTCGAGAGAATCTCTTTCGTTCATTGCCCGCGTTCGCTGAATGTGGAAGCTCATAATCTCGCGCGCCATGCTGCCTTCAGTCTTTTCGAGGGCTTTAGTTGTTTTTTGGATACTTCTTCCAATTCGGAAGAAGGGGAAAGACGTGCCCTGCAAAACAAGAGAAAACTATGCACCGGTGTGGTGCTTGCCACACCGACTCCGATGCTTAAGTCAGTTCGGAGAAGCAACTACATGAGTTCTCTTGAGTTCAAATATTCCAAGGCTAGCCTTAGATGCTTTATCATGAGGGTCTCCTTTTCATTTGGTTATGGTTGGCTTCAAACTTCTGATGATCAGCTTAAGCCCTTGGAGGGGTGCTTGCACTCAGTTGGGGACTTGGGGAGGTTGAGGGCATGTGTCAACCTCTCTTCAAGTGTCCATGTCCATTCTAGGGGTGCGTACACTCTTCTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCTTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGAAGTTCCCGGTCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTCTTCTGCGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGTCCTCTCTTCAAGCATCGTGGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGGGTGCGTACACTCTTCTAGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCTGGTCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGAATCTCATCCCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATCTCATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATTTCATCTCGATGCGTTTTCATGTCGCATAACTCTCCCTTATCGGCATTTGTGGGTGTCGACCTCCTATGGGTCTGTCTCAGCTCCTTGCATGTCGACTCTGTCATTGTCACCGAGACCTTCAACATCATCATTCTCGAGCGTTTGTCGACTCTGCTAAGAAAGCTCATCCATTCTTTTACCTTCTGCTTGATGATTCCGTTCTCCAGAGGACTTGGAGCCAAATTAAAGTTCTGGAAACAGGCCCAATTCCAAAGATTTGAGTTGATATGCTGTTTTGGGCGGTTGGGGAAAGACGTGCCCTGCAAAACAAGAGAAAACTATGCACCGGTGTGGTGCTTGCCACACCGACTCCGATGCTTAAGTCAGTTCGGAGAAGCAAGAGAGAGAATAGCCTTAGAGATTGATTCAGGCCTAATGGGCCTTCGTGAGCTTGTTTCTGCTCTGGGCTCTGGTCATTCGTAG

Protein sequence

MIENLKEKELEDAILIMWEIWNHRNNVLHNATSPDQNLIIRSVDTKISEGVAYLNFVSAMDRLRLKTQLSQVPQTHLPPDSWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFTRIKGKWPIKMLEMKAILEGLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKSEADLSKISFLVVEIDRLIVEVERISFVHCPRSLNVEAHNLARHAAFSLFEGFSCFLDTSSNSEEGERRALQNKRKLCTGVVLATPTPMLKSVRRSNYMSSLEFKYSKASLRCFIMRVSFSFGYGWLQTSDDQLKPLEGCLHSVGDLGRLRACVNLSSSVHVHSRGAYTLLGKAWGGLGSSRASLQASWSSQGCVHSSGKSLGRPRKFPEVPGPLFKHRGHPRGAYTLLRKSLGRPRKFPVLSSSIVVIPRVRTLFWGKAWGGLGSSRASLQASWSSQGGAYTLLGKSLGRPRKFPGLSSSIVVIPGVRTLFWGKAWGGLGSSWSSLQASWSSQGGAYTLLGKSLESHPEGAYTQSRSWNLISRVRTLSRGLGISSRCVFMSHNSPLSAFVGVDLLWVCLSSLHVDSVIVTETFNIIILERLSTLLRKLIHSFTFCLMIPFSRGLGAKLKFWKQAQFQRFELICCFGRLGKDVPCKTRENYAPVWCLPHRLRCLSQFGEARERIALEIDSGLMGLRELVSALGSGHS

Homology

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BLAST of Lag0015862 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 6.1e-14
Identity = 61/215 (28.37%), Postives = 103/215 (47.91%), Query Frame = 0


Query: 1   MIENLKEKELEDAILIMWEIWNHRNNVLHNATSPDQNLIIRSVDTKISEGVAYLNFVSAM 60
           M++   +++L+  ++  W IWNHRN V+        + +I+ +   ++E         +M
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSM 60

Query: 61  DRLRLKTQLSQVPQTHLPPDSWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFTRIKG 120
               L  +L   P    P   W LN DAS ++    GG+GW      G  +  G   ++ 
Sbjct: 61  LHKTLNNKLKWEPP---PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEA 120

Query: 121 KWPIKMLEMKAILEGLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKSEADLSKISFL 180
              +K+LE  AILEGLR+L  +        + P+ + +D+  V + LN+   DL+K  ++
Sbjct: 121 CNNVKLLEASAILEGLRNLTNLGV------LRPLHIETDSAEVESLLNRKREDLTKTGWV 180

Query: 181 VVEIDRLIVEVERISFVHCPRSLNVEAHNLARHAA 216
           V EI  L    E ++F    R  N  AH+LA+ A+
Sbjct: 181 VEEILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Lag0015862 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-12
Identity = 63/217 (29.03%), Postives = 105/217 (48.39%), Query Frame = 0


Query: 7   EKELEDAILIMWEIWNHRNNVLHNATSPDQNLIIRSVDTKI---------SEGVAYLNFV 66
           E+E   +++I W+IW  RN  +     P+   I  ++D  I          +G +    +
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDL 65

Query: 67  SAMDRLRLKTQLSQVPQTHLPPDSWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFTR 126
             + R+   T     P T    +SW+LNT+A+     + GG+GW   D  G  I      
Sbjct: 66  HLIRRIEDNTGAQWKPPT---SNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRI 125

Query: 127 IKGKWPIKMLEMKAILEGLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKSEADLSKI 186
           I+ +  I  LE+ AI EGLR++   +  C      PI + SD++  I+ L++   D ++I
Sbjct: 126 IRAERNITYLEVMAICEGLRAIR--QEHCR-----PIHLESDSLEAIHLLHRQCQDQTEI 185

Query: 187 SFLVVEIDRLIVEVERISFVHCPRSLNVEAHNLARHA 215
            +L+ EI +++ ++E +S  H  R  N  AH LAR A
Sbjct: 186 IWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

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BLAST of Lag0015862 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 9.8e-12
Identity = 66/219 (30.14%), Postives = 109/219 (49.77%), Query Frame = 0


Query: 7   EKELEDAILIMWEIWNHRNNVL----HNATSPDQNLIIRSV------DTKISEGVAYLNF 66
           E+E   +++I W+IW  RN  +    H+ T   Q +I R +      DT + +G +    
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNL-KGKSANKD 65

Query: 67  VSAMDRLRLKTQLSQVPQTHLPPDSWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFT 126
           +  + R+   T     P T    +SW+LNTDA+     + GG+GW   D  G  I     
Sbjct: 66  LHLIRRIGDNTGARWKPPT---SNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCR 125

Query: 127 RIKGKWPIKMLEMKAILEGLRSLPTIRASCANLE-IPPIVVLSDAIGVINPLNKSEADLS 186
            I+ +  I  LE+ AI EGLR++          E   PI + SD++  I+ L++   D +
Sbjct: 126 IIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQT 185

Query: 187 KISFLVVEIDRLIVEVERISFVHCPRSLNVEAHNLARHA 215
           +I +L+ EI +++ +++ +S  H  R  N  AH+LAR A
Sbjct: 186 EIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lag0015862 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-10
Identity = 50/185 (27.03%), Postives = 88/185 (47.57%), Query Frame = 0


Query: 1   MIENLKEKELEDAILIMWEIWNHRNNVLHNATSPDQNLIIRSVDTKISEGVAYLNFVSA- 60
           ++  L ++E+  +++I W+IW  RN  +    + D+  + RS+   I+  +     +S  
Sbjct: 22  LVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGTCISQT 81

Query: 61  ---------MDRLRLKTQLSQVPQTHLPPDSWRLNTDASRNNQISVGGVGWTCHDSSGSS 120
                    + R R    +  V  +  P + W+LNTDAS + +  VGG+GW   D  G  
Sbjct: 82  RRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEI 141

Query: 121 ICEGFTRIKGKWPIKMLEMKAILEGLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKS 176
           +  G  +I+ K  I  LE+  I+ GL+ +     S       PI + SD++ VI  + K 
Sbjct: 142 VLAGNCKIREKKEINALELMTIIRGLQFINMQSRS-------PIYLESDSVEVIRLMKKE 199

[Close]

BLAST of Lag0015862 vs. NCBI nr
Match: XP_042962672.1 (uncharacterized protein LOC122296942 [Carya illinoinensis])

HSP 1 Score: 77.0 bits (188), Expect = 7.0e-10
Identity = 61/202 (30.20%), Postives = 98/202 (48.51%), Query Frame = 0


Query: 14   ILIMWEIWNHRNNVLHNATSPDQNLIIRSVDTKISEGVAYLNFVSAMDRLRLKTQLSQVP 73
            I I W +W  RN  ++   S   ++   SV+  +S    Y   V   D    K  +++V 
Sbjct: 1119 IAITWGLWYRRNKRIYEDISIHIHV---SVNNALSLQQEYAQ-VQLFDGSNQK--ITKVV 1178

Query: 74   QTHLPP-DSWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFTRIKGKWPIKMLEMKAI 133
            + H PP D  +LN D +   + SV G+G    D  G  I       K     + +E  A+
Sbjct: 1179 RWHPPPNDFLKLNIDGATFPEHSVAGIGVVLRDQYGEVIVACSKVEKEVSSAEFIEAVAL 1238

Query: 134  LEGLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKSEADLSKISFLVVEIDRLIVEVE 193
            L GL+        CA   +P I++ +D + ++N LN++   L+ I+F++ +I RL+V  +
Sbjct: 1239 LRGLQ-------LCAQWGVPKIMLETDCLVLVNALNENSVCLTDIAFILQDIRRLMVGFQ 1298

Query: 194  RISFVHCPRSLNVEAHNLARHA 215
             +  VH  R  N+ AH LARHA
Sbjct: 1299 EVQVVHVNRLGNLVAHRLARHA 1307

[Close]

BLAST of Lag0015862 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.0e-14
Identity = 61/215 (28.37%), Postives = 103/215 (47.91%), Query Frame = 0


Query: 1   MIENLKEKELEDAILIMWEIWNHRNNVLHNATSPDQNLIIRSVDTKISEGVAYLNFVSAM 60
           M++   +++L+  ++  W IWNHRN V+        + +I+ +   ++E         +M
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSM 60

Query: 61  DRLRLKTQLSQVPQTHLPPDSWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFTRIKG 120
               L  +L   P    P   W LN DAS ++    GG+GW      G  +  G   ++ 
Sbjct: 61  LHKTLNNKLKWEPP---PMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEA 120

Query: 121 KWPIKMLEMKAILEGLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKSEADLSKISFL 180
              +K+LE  AILEGLR+L  +        + P+ + +D+  V + LN+   DL+K  ++
Sbjct: 121 CNNVKLLEASAILEGLRNLTNLGV------LRPLHIETDSAEVESLLNRKREDLTKTGWV 180

Query: 181 VVEIDRLIVEVERISFVHCPRSLNVEAHNLARHAA 216
           V EI  L    E ++F    R  N  AH+LA+ A+
Sbjct: 181 VEEILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Lag0015862 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.6e-13
Identity = 63/217 (29.03%), Postives = 105/217 (48.39%), Query Frame = 0


Query: 7   EKELEDAILIMWEIWNHRNNVLHNATSPDQNLIIRSVDTKI---------SEGVAYLNFV 66
           E+E   +++I W+IW  RN  +     P+   I  ++D  I          +G +    +
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDL 65

Query: 67  SAMDRLRLKTQLSQVPQTHLPPDSWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFTR 126
             + R+   T     P T    +SW+LNT+A+     + GG+GW   D  G  I      
Sbjct: 66  HLIRRIEDNTGAQWKPPT---SNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRI 125

Query: 127 IKGKWPIKMLEMKAILEGLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKSEADLSKI 186
           I+ +  I  LE+ AI EGLR++   +  C      PI + SD++  I+ L++   D ++I
Sbjct: 126 IRAERNITYLEVMAICEGLRAIR--QEHCR-----PIHLESDSLEAIHLLHRQCQDQTEI 185

Query: 187 SFLVVEIDRLIVEVERISFVHCPRSLNVEAHNLARHA 215
            +L+ EI +++ ++E +S  H  R  N  AH LAR A
Sbjct: 186 IWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

[Close]

BLAST of Lag0015862 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-12
Identity = 66/219 (30.14%), Postives = 109/219 (49.77%), Query Frame = 0


Query: 7   EKELEDAILIMWEIWNHRNNVL----HNATSPDQNLIIRSV------DTKISEGVAYLNF 66
           E+E   +++I W+IW  RN  +    H+ T   Q +I R +      DT + +G +    
Sbjct: 6   EEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNL-KGKSANKD 65

Query: 67  VSAMDRLRLKTQLSQVPQTHLPPDSWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFT 126
           +  + R+   T     P T    +SW+LNTDA+     + GG+GW   D  G  I     
Sbjct: 66  LHLIRRIGDNTGARWKPPT---SNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCR 125

Query: 127 RIKGKWPIKMLEMKAILEGLRSLPTIRASCANLE-IPPIVVLSDAIGVINPLNKSEADLS 186
            I+ +  I  LE+ AI EGLR++          E   PI + SD++  I+ L++   D +
Sbjct: 126 IIRTERNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQT 185

Query: 187 KISFLVVEIDRLIVEVERISFVHCPRSLNVEAHNLARHA 215
           +I +L+ EI +++ +++ +S  H  R  N  AH+LAR A
Sbjct: 186 EIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lag0015862 vs. ExPASy TrEMBL
Match: A0A803PE40 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-10
Identity = 61/215 (28.37%), Postives = 95/215 (44.19%), Query Frame = 0


Query: 5    LKEKELEDAILIMWEIWNHRNNVLHNATSPDQNLIIRSVDTKISEGVAYLNFVSAMDRLR 64
            L ++ELE   +IMW IW  RN + H  +  D   +       +       N  +A+    
Sbjct: 920  LSQQELELVFVIMWVIWTDRNKINHGESRRDGMALANYATNYMENYHKANNRPTAVTEPV 979

Query: 65   LKTQLSQVPQTHL---PPDSW--RLNTDASRNNQISVGGVGWTCHDSSGSSICEGFTRIK 124
               Q+S +P   +   PPD +  +LN DA+ N    V GVG    +  G  +      ++
Sbjct: 980  TPAQISTLPTEGIPWKPPDMYGLKLNVDAAVNPTSKVLGVGAIVRNYKGEVMAAMSKLVQ 1039

Query: 125  GKWPIKMLEMKAILEGLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKSEADLSKISF 184
            G +    +E KA+   L  +       + L +   +V +DA+ V N LN    DLS  S 
Sbjct: 1040 GCFRSDEMEAKALFHALNWI-------SQLPLSVTLVETDALRVSNFLNHETWDLSCFSD 1099

Query: 185  LVVEIDRLIVEVERISFVHCPRSLNVEAHNLARHA 215
            ++ ++  L+    RI   H  RS N  AH LA+HA
Sbjct: 1100 IIFDVRCLLSSFSRIVISHVKRSANQAAHGLAKHA 1127

[Close]

BLAST of Lag0015862 vs. ExPASy TrEMBL
Match: A0A6J5UE59 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23353 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.6e-10
Identity = 57/201 (28.36%), Postives = 91/201 (45.27%), Query Frame = 0


Query: 17   MWEIWNHRNNVLHNATSPDQNLIIRSVDTKISEGVAYLNFVSAMDRLRLKTQLSQVPQTH 76
            +W IW  RN  + +    D   ++  +  ++SE     + +  +    L+   S  P + 
Sbjct: 1068 LWRIWKARNLAVFDGVQADPTEVVLLLLKQVSEFRTAKHDLQDLQPQPLQPASSPAPLSW 1127

Query: 77   LPPD--SWRLNTDASRNNQISVGGVGWTCHDSSGSSICEGFTRIKGKWPIKMLEMKAILE 136
              P     ++N DA+ + Q   GGVGW   DS G  +C G           M+E+ AI  
Sbjct: 1128 CKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAIRH 1187

Query: 137  GLRSLPTIRASCANLEIPPIVVLSDAIGVINPLNKSEADLSKISFLVVEIDRLIVEVERI 196
             L       + CAN  +  I+V SD+   I  LN      S +  +V +I +L+  + R+
Sbjct: 1188 AL-------SECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRV 1247

Query: 197  SFVHCPRSLNVEAHNLARHAA 216
            SFV  PRS N  AH++A  A+
Sbjct: 1248 SFVFAPRSCNQAAHSVAGFAS 1261

The following BLAST results are available for this feature:

BLAST of Lag0015862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	6.1e-14	28.37	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143535.1	2.0e-12	29.03	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	9.8e-12	30.14	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143317.1	3.2e-10	27.03	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
XP_042962672.1	7.0e-10	30.20	uncharacterized protein LOC122296942 [Carya illinoinensis]	[more]

BLAST of Lag0015862 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0015862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	3.0e-14	28.37	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	9.6e-13	29.03	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	4.8e-12	30.14	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A803PE40	3.4e-10	28.37	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6J5UE59	7.6e-10	28.36	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]

BLAST of Lag0015862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 82..217 e-value: 2.0E-12 score: 49.2
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 85..214 e-value: 5.6E-15 score: 55.2
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 78..217
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 78..217
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 84..212 e-value: 7.01422E-19 score: 80.8212
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 81..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015862.1	Lag0015862.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity