Lag0015813 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0015813
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionChromo domain-containing protein
Locationchr12: 25578289 .. 25580154 (+)
RNA-Seq ExpressionLag0015813
SyntenyLag0015813
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTGCTGGGGCTTCGAAAATCCTTACTTGGAGATGATACACTGGAGGTGCTCATTAGATGGGAAAATACCTTGAAGGATGATGCAACATGGGAGTCCGCTGCCGACATTAGTACACAATTCCCATCTTTTCACCTTGAGGACAAGGTGGCTTCTTGGGGGGGGGGGGCGGTATTGATAGACCCCGGATAACTAAGGTGTACGAGAGGAGGCGCGTGAAGAAGAAAGAAAAGAGAGAGAGTGGAGAATAGCAAGTTTGTTAGGAATGGGGGCCCACGTGTTATCTGTACGTTGGGTAGAGGAGTGTATAAGAGAATGTTTTGTGTGAGAGTAGGTATCTTTTTGGCTATTGTGAATTGTATTTCTCTGATTGAGAAACTAGGGAGAGAAGGGGAGCTCTCGAATCTTCCCCGGTTGATGTTGATAAATAAAATTGGTGGCTAAGGCCTATCAGTATAATATATCAAGTCATTTTCGACTGACCTTCATATAAATTAAAAATAGTAGCAAAGCTTTTGACTGTCTTAACTTTGTTGGTTCATCAAAGTGTCTAGTAAAATGGTTAGGCGTGTGGGAAGAAGTATGAGGGTTGGCACACTTTAATGTCTCTCTTTAGGCTCATGAGACAAAATGTTCGCATCATTGTCTAATATTTTTTTAATCAGCAGATGCTAGGGTTCATTATTGTAATTTGCTTTTTGTATGCCCACTTTTGGCTGGCTGCCTTTTCTCTGTGCAAGTTTTTTTCGGTACTCCAATTCATTTTAATGAAAGTTGAGACAAGTTACCTCTGTTCCGTTAATACATCGTGTTTTAATTTTTTTCTGATATATAAATGTGATTTAATGTTCATATCTTATTGAATAAAGCCCATACACTCACCATTTAATCCTCAAAAGTTGAAGGCCTTGGAGCACTTGAATTTAATCTTGATAAGGAAGATGTTTTTAGATGAGTTAAATAAATGTAAAATTTCCCGAAAAGGTTTTGACTTTTACATGGACCTCAATTGAAAATTATGTAGGTGGATTACTTGACAGAGTGGACAGCTACATTTTTTCGGGGGCACTGGCATATTCCTTCATCAAAACATTCATGCCACTTTATGGCGTTTGAGACAGTGATGATCCATGTAATTGGGAATCAGGAAAGTGCAACTCTCGAGGTTTTTCCCCGTTGTATGGGAAATAGAGAAGGAAAAACCAGTTTGCTCTCTAAGGCTGGAGAAGCATGAGCATCAGCTAATTTATCGTTGTTGACCCAAAAGAAGCGCTTCAGCTTACTTATTCCCAACCAGGTCTTCAAAAATTCCAAGTGAAAGTATCTGTTTACCAGGTAATTGTACATAGGAATATTAAATAAAACATGCAGCTTTTTTTATGGTACGCATTCATCTCTTCAAGATAGTTTCTGGTTTTCTTGGAGATCAAGGTTTGTTTTTCTTCTATCTAGTCCTGTTTGTGGCCATGTTGATGTTGGGAGATAGGGGTTTCATCTTGTAATGCTCCTTACATTTGCATTTACTGTCCGAGGCTTAGAGTTTGTTGCTCCTTCACTGCTACTAGGCGGAAGTGCTTCATGTTTTTTCATTTTCTCAGCCATCAGGATGACAGCTCTTGCATCTCTTGTGGGTGAGATAGTATGATTGGGGGGCTGTCTAATGAGAGGTGTCAAAGATTGAAGCTAAGAGAGGAATAAACCAATCTGTATAAGTTCTCGTATATCATACTTGCATTATTAGGGATGACAGTTCTTTCCACGTGGACAGGTCCATGCCAATCTGAGAAGCACGAACACTTTAGTTTAGCTAGCATGTCCGTGTCCGACACGTGTCGGACACTTGGACACTCCGACACTTGTTAG

mRNA sequence

ATGGGGCTGCTGGGGCTTCGAAAATCCTTACTTGGAGATGATACACTGGAGGTGCTCATTAGATGGGAAAATACCTTGAAGGATGATGCAACATGGGAGTCCGCTGCCGACATTAGTACACAATTCCCATCTTTTCACCTTGAGGACAAGGTGGCTTCTTGGGGGGGGGGGGCGGTGGATTACTTGACAGAGTGGACAGCTACATTTTTTCGGGGGCACTGGCATATTCCTTCATCAAAACATTCATGCCACTTTATGGCGTTTGAGACAGTGATGATCCATGTAATTGGGAATCAGGAAAGTGCAACTCTCGAGGGGTTTCATCTTGTAATGCTCCTTACATTTGCATTTACTGTCCGAGGCTTAGAGTTTGTTGCTCCTTCACTGCTACTAGGCGGAAGTGCTTCATGTTTTTTCATTTTCTCAGCCATCAGGATGACAGCTCTTGCATCTCTTGTGGGGATGACAGTTCTTTCCACGTGGACAGGTCCATGCCAATCTGAGAAGCACGAACACTTTAGTTTAGCTAGCATGTCCGTGTCCGACACGTGTCGGACACTTGGACACTCCGACACTTGTTAG

Coding sequence (CDS)

ATGGGGCTGCTGGGGCTTCGAAAATCCTTACTTGGAGATGATACACTGGAGGTGCTCATTAGATGGGAAAATACCTTGAAGGATGATGCAACATGGGAGTCCGCTGCCGACATTAGTACACAATTCCCATCTTTTCACCTTGAGGACAAGGTGGCTTCTTGGGGGGGGGGGGCGGTGGATTACTTGACAGAGTGGACAGCTACATTTTTTCGGGGGCACTGGCATATTCCTTCATCAAAACATTCATGCCACTTTATGGCGTTTGAGACAGTGATGATCCATGTAATTGGGAATCAGGAAAGTGCAACTCTCGAGGGGTTTCATCTTGTAATGCTCCTTACATTTGCATTTACTGTCCGAGGCTTAGAGTTTGTTGCTCCTTCACTGCTACTAGGCGGAAGTGCTTCATGTTTTTTCATTTTCTCAGCCATCAGGATGACAGCTCTTGCATCTCTTGTGGGGATGACAGTTCTTTCCACGTGGACAGGTCCATGCCAATCTGAGAAGCACGAACACTTTAGTTTAGCTAGCATGTCCGTGTCCGACACGTGTCGGACACTTGGACACTCCGACACTTGTTAG

Protein sequence

MGLLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGGAVDYLTEWTATFFRGHWHIPSSKHSCHFMAFETVMIHVIGNQESATLEGFHLVMLLTFAFTVRGLEFVAPSLLLGGSASCFFIFSAIRMTALASLVGMTVLSTWTGPCQSEKHEHFSLASMSVSDTCRTLGHSDTC
Homology
[Close]
BLAST of Lag0015813 vs. NCBI nr
Match: EXC28036.1 (G patch domain-containing protein 1 [Morus notabilis])

HSP 1 Score: 68.6 bits (166), Expect = 6.9e-08
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 3   LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG 58
           L+G+R+ LLG    LEVLIRWEN  + +A+WES   ++ QFP FHLEDKV  WGGG
Sbjct: 113 LMGVRQRLLGGRMGLEVLIRWENLPEHEASWESYDVVNAQFPDFHLEDKVRFWGGG 168

[Close]
BLAST of Lag0015813 vs. NCBI nr
Match: KAA0039528.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-07
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 3   LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG 58
           +LG+RK+   +D LEVLIRW     + ATWE A  I  QFP FHL+DKV  WG G
Sbjct: 740 VLGVRKTREKEDNLEVLIRWSEGTPESATWEQATLIQEQFPEFHLKDKVTLWGVG 794

[Close]
BLAST of Lag0015813 vs. NCBI nr
Match: KAA0058453.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07291.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-07
Identity = 32/55 (58.18%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 3  LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG 58
          +LG RK+   DD LEVLIRW +   + ATWE A  I  QF  FHLEDKVA WG G
Sbjct: 8  VLGARKTGEKDDNLEVLIRWGDGTPESATWEQATLIQEQFSEFHLEDKVALWGRG 62

[Close]
BLAST of Lag0015813 vs. NCBI nr
Match: TYK29006.1 (ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 35/99 (35.35%), Postives = 51/99 (51.52%), Query Frame = 0 

Query: 3   LLGLRKSLLGDDTLEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGGAVDYL 62
           +LG+ K   G+D+LEVLIRW+    + ATWE A  +  QF  FHLEDK A WG       
Sbjct: 738 VLGVHKVGEGEDSLEVLIRWDGGTPEKATWERATLVQDQFLEFHLEDKAALWG------- 797

Query: 63  TEWTATFFRGHWH----IPSSKHSCHFMAFETVMIHVIG 98
               A+  R  W     + ++ H   F +   + +H++G
Sbjct: 798 ---VASVVRPIWKMLCILQTTLHHREFCSTVNLHLHLVG 826

[Close]
BLAST of Lag0015813 vs. NCBI nr
Match: AEV42261.1 (hypothetical protein [Beta vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 3    LLGLRKSLLGDDT-LEVLIRWENTLKDDATWESAADISTQFPSFHLEDKVASWGGG 58
            +LG+R + L      E+L++W +   D+ATWE+  DI  +FP+FHLEDKV +W GG
Sbjct: 1314 VLGIRPNPLNQAAPAEILVQWSDMSADEATWENVQDIHERFPTFHLEDKVLNWAGG 1369

The following BLAST results are available for this feature:
BLAST of Lag0015813 vs. NCBI nr
Match NameE-valueIdentityDescription
EXC28036.16.9e-0858.93G patch domain-containing protein 1 [Morus notabilis][more]
KAA0039528.17.7e-0754.55ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15281.1 ty3-gyp... [more]
KAA0058453.17.7e-0758.18Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07291.1 Retrotransp... [more]
TYK29006.11.1e-0535.35ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa][more]
AEV42261.11.9e-0546.43hypothetical protein [Beta vulgaris][more]
BLAST of Lag0015813 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0015813.1Lag0015813.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
biological_process GO:0006396 RNA processing
molecular_function GO:0003676 nucleic acid binding