Lag0015797 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0015797
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC110412945
Location	chr12: 24454357 .. 24454677 (-)
RNA-Seq Expression	Lag0015797
Synteny	Lag0015797

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACCAGTTATCAATGGCCGACCGAAAGGGGAGTGATTACAAAGAAGGCTAGATTATATGAATTGGATGAGTCAAGTTCATTGAAGGCACAGCTGGCATCTCTGACCAATGTGCTGGACAAGCTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCTTAGCTGAAGGTCATCCAAAGAAGGAAGGTCAAGACGTGGAAGAAGTCCAGTACTTAGGAAATAGACCATATGCTCAAGGAGTACCGAACTTCTACCACCCCAATCTGCGCAATCACGAGATCTTCTCATATTCAAATACGAAGAATGTTTTGTAG

mRNA sequence

ATGGCGGCAACCAGTTATCAATGGCCGACCGAAAGGGGAGTGATTACAAAGAAGGCTAGATTATATGAATTGGATGAGTCAAGTTCATTGAAGGCACAGCTGGCATCTCTGACCAATGTGCTGGACAAGCTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCTTAGCTGAAGGTCATCCAAAGAAGGAAGGTCAAGACGTGGAAGAAGTCCAGTACTTAGGAAATAGACCATATGCTCAAGGAGTACCGAACTTCTACCACCCCAATCTGCGCAATCACGAGATCTTCTCATATTCAAATACGAAGAATGTTTTGTAG

Coding sequence (CDS)

ATGGCGGCAACCAGTTATCAATGGCCGACCGAAAGGGGAGTGATTACAAAGAAGGCTAGATTATATGAATTGGATGAGTCAAGTTCATTGAAGGCACAGCTGGCATCTCTGACCAATGTGCTGGACAAGCTGACTTCATCTGAGGTGGTCAAGTCCATTTCCACCTTAGCTGAAGGTCATCCAAAGAAGGAAGGTCAAGACGTGGAAGAAGTCCAGTACTTAGGAAATAGACCATATGCTCAAGGAGTACCGAACTTCTACCACCCCAATCTGCGCAATCACGAGATCTTCTCATATTCAAATACGAAGAATGTTTTGTAG

Protein sequence

MAATSYQWPTERGVITKKARLYELDESSSLKAQLASLTNVLDKLTSSEVVKSISTLAEGHPKKEGQDVEEVQYLGNRPYAQGVPNFYHPNLRNHEIFSYSNTKNVL

Homology

[Close]

BLAST of Lag0015797 vs. NCBI nr
Match: XP_023929660.1 (uncharacterized protein LOC112040975 [Quercus suber])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 51/112 (45.54%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MAATSYQWPTERGVITKKARLYELDESSSLKAQLASLTNVLDKLTSSEVVKSISTLAEGH 60
           MA+  YQWPTER +  K A ++EL+  ++L AQ+ASL++ +  LT+  + +S+  +A   
Sbjct: 211 MASNKYQWPTERTMAKKVAGIHELESFAALAAQVASLSHQVSALTTQRIPQSVEYVAASS 270

Query: 61  ---PKKEGQDVEEVQYLGNRPY---AQGVPNFYHPNLRNHEIFSYSNTKNVL 107
              P  E    E VQY+ NR Y      +PN+YHP LRNHE FSY NTKNVL
Sbjct: 271 MTVPMNEASQ-EHVQYINNRNYNYHGNPMPNYYHPGLRNHENFSYGNTKNVL 321

[Close]

BLAST of Lag0015797 vs. NCBI nr
Match: XP_023881727.1 (uncharacterized protein LOC111994101 [Quercus suber])

HSP 1 Score: 90.9 bits (224), Expect = 7.2e-15
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MAATSYQWPTERGVITKKARLYELDESSSLKAQLASLTNVLDKLTSSEVVKSISTLAEGH 60
           MA+ +YQWPTER +  K A ++EL+  ++L AQ+ASL++ +  LT+  + +S   +A   
Sbjct: 180 MASNNYQWPTERTMAKKVAGIHELEPFAALSAQVASLSHQVSALTTQRIPQSAEFVAASS 239

Query: 61  ---PKKEGQDVEEVQYLGNRPY---AQGVPNFYHPNLRNHEIFSYSNTKNVL 107
              P  E    E+VQY+ NR Y      +PN+YHP LRNHE FSY NTKNVL
Sbjct: 240 MTIPMNEASQ-EQVQYINNRNYNYRGNPMPNYYHPGLRNHENFSYGNTKNVL 290

[Close]

BLAST of Lag0015797 vs. NCBI nr
Match: XP_023903214.1 (uncharacterized protein LOC112015077 [Quercus suber])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MAATSYQWPTERGVITKKARLYELDESSSLKAQLASLTNVLDKLTSSEVVKSISTLAEGH 60
           MA+ +YQWPTER +  K A ++EL+  ++L AQ+ASL++ +  L++  + +S   +A   
Sbjct: 211 MASNNYQWPTERTMAKKVAGIHELEPFAALSAQVASLSHQVSALSTQRIPQSAEYVAASS 270

Query: 61  ---PKKEGQDVEEVQYLGNRPY---AQGVPNFYHPNLRNHEIFSYSNTKNVL 107
              P  E    E+VQY+ NR Y      +PN+YHP LRNHE FSY NTKNVL
Sbjct: 271 MTVPMNEASQ-EQVQYINNRNYNYRGNPMPNYYHPGLRNHENFSYGNTKNVL 321

[Close]

BLAST of Lag0015797 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MAATSYQWPTERGVITKKARLYELDESSSLKAQLASLTNVLDKLTSSEVVKSISTLAEGH 60
           MA+ +YQWPTER +  K A ++EL+  ++L AQ+ASL++ +  LT+  + +    +A   
Sbjct: 211 MASNNYQWPTERTMAKKVAGIHELEPFAALSAQVASLSHQVSALTTQRIPQGAEYVAASS 270

Query: 61  ---PKKEGQDVEEVQYLGNRPY---AQGVPNFYHPNLRNHEIFSYSNTKNVL 107
              P  E    E+VQY+ NR Y      +PN+YHP LRNHE FSY NTKNVL
Sbjct: 271 MTVPMNEASQ-EQVQYINNRNYNYRGNPMPNYYHPGLRNHENFSYGNTKNVL 321

[Close]

BLAST of Lag0015797 vs. NCBI nr
Match: XP_030969898.1 (uncharacterized protein LOC115990189 [Quercus lobata])

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-14
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MAATSYQWPTERGVITKKARLYELDESSSLKAQLASLTNVLDKLTSSEVVKSISTLAEGH 60
           MA+ +YQWPTER +  K A ++ELD  ++L  Q+ASL+  +  LT+  + +S   +A   
Sbjct: 158 MASNNYQWPTERTMDKKVAGIHELDPFAALSTQVASLSYQVSTLTTQRIPQSAEYVAASS 217

Query: 61  ---PKKEGQDVEEVQYLGNRPY---AQGVPNFYHPNLRNHEIFSYSNTKNVL 107
              P  E    E+VQY+ NR Y      +PN+YHP LRNHE FSY NTKNVL
Sbjct: 218 MTVPMNEASQ-EQVQYINNRNYNYRGNPMPNYYHPRLRNHENFSYGNTKNVL 268

The following BLAST results are available for this feature:

BLAST of Lag0015797 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023929660.1	5.5e-15	45.54	uncharacterized protein LOC112040975 [Quercus suber]	[more]
XP_023881727.1	7.2e-15	45.54	uncharacterized protein LOC111994101 [Quercus suber]	[more]
XP_023903214.1	2.1e-14	44.64	uncharacterized protein LOC112015077 [Quercus suber]	[more]
XP_023874613.1	2.1e-14	44.64	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_030969898.1	2.7e-14	45.54	uncharacterized protein LOC115990189 [Quercus lobata]	[more]

BLAST of Lag0015797 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0015797.1	Lag0015797.1	mRNA